Experiment set19IT088 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.9 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_1231 -5.8 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0966 -5.7 -12.1 Histidinol dehydrogenase compare
PP_5289 -5.7 -3.9 Acetylglutamate kinase compare
PP_0967 -5.5 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -5.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1142 -4.8 -1.2 conserved protein of unknown function compare
PP_3245 -4.7 -1.7 conserved protein of unknown function compare
PP_5348 -4.6 -8.0 Transcriptional regulator, LysR family compare
PP_4961 -4.4 -1.6 putative Lipoprotein compare
PP_0083 -4.3 -7.5 tryptophan synthase beta chain compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_4678 -4.1 -10.2 Ketol-acid reductoisomerase compare
PP_3511 -4.1 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_5347 -4.0 -8.9 pyruvate carboxylase subunit A compare
PP_5203 -3.9 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_1995 -3.8 -6.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0965 -3.8 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -3.7 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -3.7 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4098 -3.7 -2.1 UvrABC system protein C compare
PP_4680 -3.6 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -3.4 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_3307 -3.3 -1.9 conserved protein of unknown function compare
PP_1994 -3.3 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_1237 -3.3 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1079 -3.2 -5.5 Ornithine carbamoyltransferase compare
PP_0250 -3.1 -2.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0082 -3.1 -4.4 tryptophan synthase alpha chain compare
PP_0365 -3.1 -6.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0289 -3.1 -4.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -3.0 -5.2 methionine biosynthesis protein MetW compare
PP_5346 -2.9 -5.6 pyruvate carboxylase subunit B compare
PP_4642 -2.9 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_0421 -2.9 -4.4 Anthranilate phosphoribosyltransferase compare
PP_1716 -2.8 -1.7 Transcriptional regulator, Cro/CI family compare
PP_5128 -2.8 -4.9 Dihydroxy-acid dehydratase compare
PP_1985 -2.7 -3.2 3-isopropylmalate dehydratase large subunit compare
PP_5014 -2.7 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1999 -2.7 -1.8 membrane protein required for colicin V production compare
PP_2328 -2.7 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.6 -2.3 conserved protein of unknown function compare
PP_0364 -2.6 -4.5 pimeloyl-[acp] methyl ester esterase compare
PP_3409 -2.5 -2.7 putative Cobalamin biosynthesis protein cobE compare
PP_1988 -2.5 -4.0 3-isopropylmalate dehydrogenase compare
PP_1088 -2.5 -6.5 Argininosuccinate synthase compare
PP_5217 -2.5 -6.5 Polyphosphate kinase compare
PP_2371 -2.5 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_1025 -2.5 -6.7 2-isopropylmalate synthase compare
PP_0417 -2.5 -9.2 Anthranilate synthase component 1 compare
PP_0787 -2.5 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5007 -2.5 -2.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5095 -2.4 -1.2 pyrroline-5-carboxylate reductase compare
PP_0290 -2.4 -3.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0362 -2.4 -5.9 Biotin synthase compare
PP_0957 -2.3 -1.7 D-arabinose 5-phosphate isomerase compare
PP_5028 -2.3 -4.5 proline iminopeptidase compare
PP_2378 -2.3 -3.0 Fe/S biogenesis protein NfuA compare
PP_4952 -2.3 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2668 -2.2 -2.3 ABC efflux transporter, ATP-binding protein compare
PP_4379 -2.2 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0291 -2.2 -2.2 conserved protein of unknown function compare
PP_4691 -2.2 -2.8 sugar fermentation stimulation protein A compare
PP_2001 -2.1 -4.8 O-succinylhomoserine sulfhydrylase compare
PP_1096 -2.1 -1.6 putative electron transport complex protein compare
PP_0246 -2.1 -2.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_1304 -2.1 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5097 -2.1 -5.7 homoserine O-acetyltransferase compare
PP_0001 -2.1 -1.4 probable chromosome-partitioning protein compare
PP_4696 -2.1 -3.4 Nitrogen regulation protein NR(I) compare
PP_3580 -2.0 -2.2 conserved protein of unknown function compare
PP_4909 -2.0 -4.0 phosphoserine phosphatase compare
PP_4679 -2.0 -2.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3417 -2.0 -3.7 D-gluconate transporter compare
PP_2414 -2.0 -1.7 conserved exported protein of unknown function compare
PP_0366 -2.0 -2.7 dethiobiotin synthetase compare
PP_1022 -1.9 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_2142 -1.9 -1.7 Cell division inhibitor SulA compare
PP_0422 -1.9 -2.3 Indole-3-glycerol phosphate synthase compare
PP_2168 -1.9 -4.8 Transaldolase compare
PP_4829 -1.9 -2.6 putative precorrin-3B synthase compare
PP_0607 -1.9 -1.0 putative Type IV pili biogenesis protein FimT compare
PP_4561 -1.9 -0.9 stress response protein compare
PP_1733 -1.8 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_4832 -1.8 -1.6 Precorrin-6x reductase compare
PP_2375 -1.8 -6.4 cobalamin-dependent methionine synthase compare
PP_0848 -1.8 -1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4848 -1.8 -1.8 Curved DNA-binding protein compare
PP_4214 -1.8 -2.0 pyoverdine biosynthesis related protein compare
PP_5303 -1.8 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -1.8 -3.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5216 -1.8 -1.2 exopolyphosphatase compare
PP_0022 -1.8 -1.0 hypothetical protein compare
PP_2611 -1.8 -2.2 membrane protein of unknown function compare
PP_4253 -1.7 -1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_1681 -1.7 -4.6 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1729 -1.7 -1.6 conserved protein of unknown function compare
PP_0184 -1.7 -3.6 Argininosuccinate lyase compare
PP_0846 -1.7 -0.7 DnaK-like molecular chaperone specific for IscU compare
PP_4073 -1.7 -1.3 conserved exported protein of unknown function compare
PP_0833 -1.6 -1.1 queuine tRNA-ribosyltransferase compare
PP_0719 -1.6 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4785 -1.6 -3.1 conserved exported protein of unknown function compare
PP_5256 -1.6 -2.4 Cyclic nucleotide-binding protein compare
PP_2145 -1.6 -2.5 beta-N-acetylglucosaminidase compare
PP_1677 -1.6 -2.3 Adenosyl-cobyric acid synthase compare
PP_1672 -1.6 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0048 -1.6 -1.1 conserved protein of unknown function compare
PP_4213 -1.6 -1.9 putative dipeptidase compare
PP_4546 -1.6 -3.3 ATP-dependent helicase HrpA compare
PP_5017 -1.6 -1.0 Sec-independent protein translocase protein TatB compare
PP_5582 -1.6 -1.1 conserved protein of unknown function compare
PP_2402 -1.5 -1.9 putative Sensor histidine kinase compare
PP_1673 -1.5 -2.3 cobyrinate a,c-diamide synthase compare
PP_0363 -1.5 -5.0 8-amino-7-oxononanoate synthase compare
PP_0616 -1.5 -1.3 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_0393 -1.5 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1734 -1.5 -2.5 Probable septum site-determining protein MinC compare
PP_1664 -1.5 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_4989 -1.5 -1.9 Protein PilJ compare
PP_1362 -1.5 -1.9 pyruvate kinase II compare
PP_5499 -1.5 -2.3 conserved protein of unknown function compare
PP_3508 -1.5 -2.0 Protein CobW compare
PP_0959 -1.5 -1.2 phospholipid ABC transporter compare
PP_1783 -1.4 -1.9 dTDP-glucose pyrophosphorylase compare
PP_4131 -1.4 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_1690 -1.4 -1.2 conserved protein of unknown function compare
PP_0003 -1.4 -1.7 16S RNA methyltransferase compare
PP_2616 -1.4 -1.9 conserved protein of unknown function compare
PP_5557 -1.4 -1.8 protein of unknown function compare
PP_1675 -1.4 -4.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5659 -1.4 -3.1 protein of unknown function compare
PP_1676 -1.4 -2.5 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5423 -1.4 -0.9 conserved membrane protein of unknown function compare
PP_2341 -1.4 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2307 -1.4 -0.9 conserved protein of unknown function compare
PP_2776 -1.4 -2.3 Homocysteine S-methyltransferase family protein compare
PP_4593 -1.4 -1.1 conserved protein of unknown function compare
PP_2226 -1.3 -2.5 putative K(+)/H(+) antiporter subunit F compare
PP_2373 -1.3 -1.8 conserved protein of unknown function compare
PP_1763 -1.3 -1.6 putative oxidoreductase compare
PP_4180 -1.3 -1.3 conserved protein of unknown function compare
PP_1387 -1.3 -2.2 Probable HTH-type transcriptional regulator TtgR compare
PP_4827 -1.3 -3.6 Precorrin-2 C(20)-methyltransferase compare
PP_2203 -1.3 -1.7 conserved protein of unknown function compare
PP_4824 -1.2 -3.4 Sensor histidine kinase/response regulator compare
PP_4480 -1.2 -3.3 arginine N-succinyltransferase, subunit alpha compare
PP_1656 -1.2 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1344 -1.2 -1.2 conserved protein of unknown function compare
PP_4787 -1.2 -1.7 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4977 -1.2 -3.7 5,10-methylenetetrahydrofolate reductase compare
PP_2750 -1.2 -1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3102 -1.2 -1.5 conserved protein of unknown function compare
PP_t13 -1.2 -1.9 tRNA-Lys compare
PP_0025 -1.2 -0.9 hypothetical protein compare
PP_3903 -1.2 -1.1 conserved protein of unknown function compare
PP_2070 -1.2 -1.1 Transcriptional regulator, AraC family compare
PP_5350 -1.2 -1.3 Transcriptional regulator, RpiR family compare
PP_5507 -1.2 -2.3 protein of unknown function compare
PP_5674 -1.2 -1.5 conserved protein of unknown function compare
PP_4984 -1.1 -3.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2882 -1.1 -2.8 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1568 -1.1 -1.0 conserved protein of unknown function compare
PP_0182 -1.1 -1.9 conserved protein of unknown function compare
PP_1824 -1.1 -0.9 Smr domain protein compare
PP_5015 -1.1 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5519 -1.1 -2.3 conserved protein of unknown function of phage origin compare
PP_4871 -1.1 -1.5 putative lysine decarboxylase family protein compare
PP_3799 -1.1 -1.7 conserved exported protein of unknown function compare
PP_4964 -1.1 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1987 -1.1 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_3158 -1.1 -1.7 conserved exported protein of unknown function compare
PP_4833 -1.1 -2.8 SURF1 domain protein compare
PP_0994 -1.1 -3.1 putative RNA polymerase sigma factor compare
PP_5686 -1.1 -1.6 protein of unknown function compare
PP_4018 -1.1 -1.6 Acetyltransferase, GNAT family compare
PP_0119 -1.1 -1.2 putative zinc uptake regulation protein ZUR compare
PP_0254 -1.1 -1.2 conserved protein of unknown function compare
PP_3094 -1.1 -1.4 conserved exported protein of unknown function compare
PP_4738 -1.1 -1.3 conserved exported protein of unknown function compare
PP_1536 -1.1 -1.4 conserved protein of unknown function compare
PP_0181 -1.1 -2.1 conserved protein of unknown function compare
PP_2388 -1.1 -1.1 Transporter, LysE family compare
PP_1764 -1.1 -1.3 Phosphoglycolate phosphatase 2 compare
PP_2658 -1.1 -2.2 phosphate ABC transporter compare
PP_4069 -1.0 -2.1 conserved protein of unknown function compare
PP_4897 -1.0 -1.4 N-acetylmuramoyl-L-alanine amidase compare
PP_1730 -1.0 -2.4 Probable M18 family aminopeptidase 2 compare
PP_1898 -1.0 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_3882 -1.0 -2.4 putative Phage terminase, small subunit compare
PP_2661 -1.0 -1.5 conserved protein of unknown function compare
PP_5619 -1.0 -2.9 protein of unknown function compare
PP_1303 -1.0 -2.4 Sulfate adenylyltransferase subunit 2 compare
PP_3866 -1.0 -1.5 conserved protein of unknown function compare
PP_3286 -1.0 -2.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4830 -1.0 -1.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_5201 -1.0 -1.1 conserved protein of unknown function, UPF0149 family compare
PP_2032 -1.0 -2.1 putative ATPase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms