Experiment set19IT087 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0967 -6.7 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -6.6 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -6.2 -9.5 3-isopropylmalate dehydrogenase compare
PP_1986 -6.1 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_5015 -5.7 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1079 -5.5 -6.0 Ornithine carbamoyltransferase compare
PP_2371 -5.4 -7.4 Sulphite reductase hemoprotein, beta subunit compare
PP_1420 -5.4 -7.7 Transcriptional regulatory protein tctD conserved
PP_3511 -5.3 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_5289 -5.3 -5.1 Acetylglutamate kinase compare
PP_4679 -5.2 -7.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4254 -5.1 -1.8 conserved protein of unknown function compare
PP_0291 -5.1 -5.4 conserved protein of unknown function compare
PP_4678 -5.0 -13.7 Ketol-acid reductoisomerase compare
PP_5014 -5.0 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4994 -4.8 -5.3 conserved protein of unknown function compare
PP_0593 -4.7 -1.2 putative ribosome-binding factor compare
PP_0184 -4.7 -8.5 Argininosuccinate lyase compare
PP_0957 -4.7 -1.6 D-arabinose 5-phosphate isomerase compare
PP_0735 -4.6 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0083 -4.5 -7.1 tryptophan synthase beta chain compare
PP_3411 -4.5 -1.5 conserved protein of unknown function compare
PP_5185 -4.4 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -4.4 -8.5 Histidinol dehydrogenase compare
PP_5128 -4.4 -8.1 Dihydroxy-acid dehydratase compare
PP_3999 -4.3 -8.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -4.3 -6.6 Nitrogen regulation protein NR(I) compare
PP_4902 -4.3 -2.9 Oligoribonuclease compare
PP_1421 -4.2 -5.9 putative Sensor histidine kinase TctE conserved
PP_2402 -4.1 -2.7 putative Sensor histidine kinase compare
PP_5098 -4.1 -5.7 methionine biosynthesis protein MetW compare
PP_2327 -4.1 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -4.0 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4122 -4.0 -2.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5097 -4.0 -9.0 homoserine O-acetyltransferase compare
PP_2001 -3.9 -8.4 O-succinylhomoserine sulfhydrylase compare
PP_4680 -3.9 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -3.8 -8.4 2-isopropylmalate synthase compare
PP_1186 -3.7 -2.0 two component system DNA-binding transcriptional dual regulator compare
PP_2168 -3.6 -6.5 Transaldolase compare
PP_0417 -3.6 -11.4 Anthranilate synthase component 1 compare
PP_1650 -3.5 -23.3 Sensor protein GacS compare
PP_0122 -3.5 -2.6 conserved exported protein of unknown function compare
PP_4273 -3.5 -1.1 Transcriptional regulator, MerR family compare
PP_1985 -3.5 -3.0 3-isopropylmalate dehydratase large subunit compare
PP_1418 -3.5 -5.7 putative Tricarboxylate transport protein TctC conserved
PP_4099 -3.5 -28.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1994 -3.5 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_4890 -3.4 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4804 -3.4 -4.0 RlpA-like lipoprotein compare
PP_1995 -3.4 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -3.4 -3.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0406 -3.3 -3.6 Nucleotidyltransferase family protein compare
PP_0289 -3.2 -5.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4874 -3.1 -1.5 50S ribosomal protein L9 compare
PP_3508 -3.1 -2.5 Protein CobW compare
PP_4785 -3.0 -4.2 conserved exported protein of unknown function compare
PP_4364 -3.0 -3.1 putative Anti-sigma F factor antagonist compare
PP_4964 -2.9 -4.8 D-erythrose 4-phosphate dehydrogenase compare
PP_2370 -2.8 -2.6 conserved protein of unknown function compare
PP_0292 -2.8 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1679 -2.8 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0082 -2.8 -3.5 tryptophan synthase alpha chain compare
PP_4695 -2.6 -7.5 Sensory box histidine kinase compare
PP_1208 -2.6 -1.8 conserved protein of unknown function, SlyX family compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_5095 -2.5 -1.2 pyrroline-5-carboxylate reductase compare
PP_0566 -2.5 -1.2 translation-related factor compare
PP_2136 -2.5 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4262 -2.5 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2328 -2.4 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_2088 -2.3 -2.0 RNA polymerase sigma factor SigX compare
PP_0307 -2.3 -2.1 conserved exported protein of unknown function compare
PP_1088 -2.3 -5.9 Argininosuccinate synthase compare
PP_0422 -2.2 -2.3 Indole-3-glycerol phosphate synthase compare
PP_0241 -2.2 -2.1 Transporter compare
PP_4120 -2.2 -4.3 NADH-quinone oxidoreductase subunit B compare
PP_2499 -2.2 -1.2 conserved protein of unknown function compare
PP_4126 -2.2 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_5093 -2.2 -0.9 twitching motility protein compare
PP_1783 -2.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_4480 -2.1 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_5303 -2.1 -2.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5001 -2.0 -1.5 protease HslVU, ATPase component compare
PP_2145 -2.0 -1.9 beta-N-acetylglucosaminidase compare
PP_2784 -2.0 -3.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1655 -2.0 -3.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1898 -2.0 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_5155 -2.0 -2.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1654 -2.0 -2.5 cysteine synthase B compare
PP_5227 -1.9 -4.8 diaminopimelate decarboxylase compare
PP_0164 -1.9 -3.8 conserved protein of unknown function compare
PP_3365 -1.9 -1.1 Acetolactate synthase compare
PP_0421 -1.9 -3.8 Anthranilate phosphoribosyltransferase compare
PP_4124 -1.9 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_4196 -1.9 -1.6 conserved exported protein of unknown function compare
PP_5176 -1.9 -1.5 conserved protein of unknown function compare
PP_2475 -1.9 -3.4 Transcriptional regulator, TetR family compare
PP_1528 -1.8 -1.4 conserved protein of unknown function compare
PP_2403 -1.8 -1.3 Chemotaxis protein CheY compare
PP_4895 -1.8 -2.1 tRNA dimethylallyltransferase compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_5505 -1.8 -2.6 conserved transmembrane protein of unknown function compare
PP_5423 -1.8 -2.0 conserved membrane protein of unknown function compare
PP_4129 -1.8 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4828 -1.8 -1.2 Precorrin-8X methylmutase compare
PP_4793 -1.8 -1.7 conserved protein of unknown function compare
PP_5217 -1.7 -4.8 Polyphosphate kinase compare
PP_1702 -1.7 -2.9 Recombination-associated protein RdgC compare
PP_1553 -1.7 -1.4 conserved protein of unknown function compare
PP_4212 -1.7 -2.3 pyoverdine biosynthesis related protein compare
PP_1214 -1.7 -1.7 putative transcriptional regulatory protein compare
PP_0368 -1.7 -5.8 putative Acyl-CoA dehydrogenase compare
PP_4681 -1.7 -1.8 conserved protein of unknown function compare
PP_0290 -1.7 -2.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0789 -1.7 -2.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4133 -1.7 -1.9 Transcriptional regulator-related protein compare
PP_1774 -1.7 -2.2 conserved exported protein of unknown function compare
PP_1048 -1.6 -1.4 putative protein secretion protein for export compare
PP_1303 -1.6 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_t29 -1.6 -1.9 tRNA-Ala compare
PP_0547 -1.6 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4909 -1.6 -2.9 phosphoserine phosphatase compare
PP_4045 -1.6 -1.3 conserved protein of unknown function compare
PP_1729 -1.6 -1.6 conserved protein of unknown function compare
PP_4131 -1.6 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_1734 -1.6 -2.3 Probable septum site-determining protein MinC compare
PP_2720 -1.6 -1.1 conserved protein of unknown function compare
PP_1416 -1.6 -3.7 putative Tricarboxylate transport protein TctA compare
PP_1656 -1.6 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_5104 -1.6 -4.1 thiazole synthase compare
PP_3662 -1.5 -4.0 conserved protein of unknown function compare
PP_1833 -1.5 -2.0 conserved protein of unknown function compare
PP_2442 -1.5 -1.5 conserved protein of unknown function, DUF480 family compare
PP_2137 -1.5 -1.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_5320 -1.5 -3.4 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_0393 -1.5 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2433 -1.4 -2.0 conserved protein of unknown function compare
PP_4710 -1.4 -4.7 tRNA pseudouridine 55 synthase compare
PP_1001 -1.4 -1.8 arginine deiminase compare
PP_2903 -1.4 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2187 -1.4 -3.6 Universal stress protein family compare
PP_0949 -1.4 -2.5 putative ATP-binding protein UPF0042 compare
PP_5114 -1.4 -1.9 putative adenine methyltransferase compare
PP_0516 -1.4 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_0872 -1.4 -2.8 Peptide chain release factor 3 compare
PP_4693 -1.3 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_3792 -1.3 -2.2 conserved protein of unknown function compare
PP_1489 -1.3 -1.9 CheW domain protein compare
PP_3473 -1.3 -2.5 curli secretion and assembly outer membrane associated component compare
PP_1430 -1.3 -3.7 putative periplasmic serine endoprotease DegP-like compare
PP_4701 -1.3 -0.7 glucose-6-phosphate isomerase compare
PP_2525 -1.3 -1.4 conserved protein of unknown function compare
PP_0003 -1.3 -1.3 16S RNA methyltransferase compare
PP_2309 -1.3 -1.0 conserved protein of unknown function compare
PP_3539 -1.3 -1.6 putative Transcriptional regulator compare
PP_2171 -1.2 -1.7 Transporter, LysE family compare
PP_4875 -1.2 -1.9 conserved membrane protein of unknown function compare
PP_0194 -1.2 -2.3 Transcriptional regulatory protein AlgP compare
PP_2928 -1.2 -3.4 Saccharopine dehydrogenase compare
PP_2378 -1.2 -1.6 Fe/S biogenesis protein NfuA compare
PP_1224 -1.2 -2.7 periplasmic subunit of the TolQRA transport system compare
PP_4121 -1.2 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_t49 -1.2 -2.8 tRNA-Met compare
PP_2025 -1.2 -1.8 Exonuclease SbcD compare
PP_4787 -1.2 -1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2900 -1.2 -1.8 conserved protein of unknown function compare
PP_0420 -1.2 -3.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5313 -1.2 -1.3 DNA-binding protein HU-alpha compare
PP_2322 -1.2 -1.8 Major outer membrane lipoprotein compare
PP_3971 -1.2 -1.2 conserved protein of unknown function compare
PP_0254 -1.2 -1.6 conserved protein of unknown function compare
PP_1713 -1.2 -0.7 Transcriptional regulator PcaQ compare
PP_0607 -1.2 -0.7 putative Type IV pili biogenesis protein FimT compare
PP_1632 -1.1 -1.0 conserved protein of unknown function compare
PP_3477 -1.1 -3.0 Putative secretion type II protein related to protein G compare
PP_1609 -1.1 -0.9 conserved protein of unknown function compare
PP_4818 -1.1 -1.4 ribosomal protein L11 methyltransferase compare
PP_5727 -1.1 -2.7 protein of unknown function compare
PP_1176 -1.1 -1.2 conserved protein of unknown function compare
PP_1326 -1.1 -1.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3810 -1.1 -1.5 conserved protein of unknown function compare
PP_2653 -1.1 -1.4 Transcriptional regulator, Cro/CI family compare
PP_4993 -1.1 -1.7 Glutathione synthetase compare
PP_4782 -1.1 -1.6 Phosphomethylpyrimidine kinase compare
PP_2760 -1.1 -2.3 putative ribose transport permease protein compare
PP_4707 -1.1 -1.8 OsmY-related protein compare
PP_5706 -1.1 -1.6 Sec translocation complex - SecG subunit compare
PP_5145 -1.1 -6.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1319 -1.1 -2.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5704 -1.1 -1.2 conserved protein of unknown function compare
PP_0434 -1.1 -2.3 Anhydro-N-acetylmuramic acid kinase compare
PP_0572 -1.0 -4.3 peptidoglycan glycosyltransferase compare
PP_2880 -1.0 -1.5 Transcriptional regulator, TetR family compare
PP_5048 -1.0 -2.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1562 -1.0 -0.7 putative Phage terminase, small subunit compare
PP_5546 -1.0 -0.9 conserved protein of unknown function compare
PP_4738 -1.0 -1.5 conserved exported protein of unknown function compare
PP_2462 -1.0 -1.4 conserved protein of unknown function compare
PP_4824 -1.0 -2.6 Sensor histidine kinase/response regulator compare


Specific Phenotypes

For 3 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms