Experiment set19IT087 for Pseudomonas putida KT2440

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Growth at pH9 and carbon source Trisodium citrate dihydrate

200 most detrimental genes:

  gene name fitness t score description  
PP_1778 +2.3 11.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1215 +2.2 2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1779 +2.2 10.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1325 +2.1 12.6 putative lipoprotein compare
PP_1269 +1.7 2.4 Universal stress protein family compare
PP_4642 +1.7 2.4 Cyclic diguanosine monophosphate-binding protein compare
PP_5000 +1.7 1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_5084 +1.6 9.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4136 +1.6 1.3 Transcriptional regulator, LuxR family compare
PP_4342 +1.5 3.3 flagellar synthesis regulator, putative ATPase compare
PP_1142 +1.4 1.7 conserved protein of unknown function compare
PP_0274 +1.3 1.9 putative transcriptional regulator containing HTH domain compare
PP_4989 +1.2 2.0 Protein PilJ compare
PP_0874 +1.2 1.5 conserved protein of unknown function compare
PP_5604 +1.2 1.5 putative subtilisin-like serine protease compare
PP_4720 +1.2 3.0 putative RNA binding protein compare
PP_5008 +1.2 0.9 Poly granule-associated protein compare
PP_5198 +1.1 2.2 conserved protein of unknown function compare
PP_3808 +1.1 1.7 Antibiotic synthesis protein MbtH compare
PP_5216 +1.0 1.7 exopolyphosphatase compare
PP_1004 +1.0 2.3 conserved protein of unknown function compare
PP_1513 +1.0 2.1 Ribosomal RNA small subunit methyltransferase J compare
PP_3392 +1.0 1.8 conserved protein of unknown function compare
PP_4482 +1.0 2.2 Transcriptional regulator, AraC family compare
PP_3110 +1.0 2.1 protein of unknown function compare
PP_0616 +1.0 2.6 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_5051 +1.0 1.8 conserved protein of unknown function compare
PP_4941 +1.0 3.4 conserved exported protein of unknown function compare
PP_3874 +1.0 1.6 conserved protein of unknown function compare
PP_1404 +1.0 1.8 conserved protein of unknown function compare
PP_5580 +1.0 1.7 protein of unknown function compare
PP_5324 +1.0 2.4 Response regulator compare
PP_5337 +1.0 3.3 LysR family transcriptional regulator compare
PP_3880 +1.0 1.5 conserved exported protein of unknown function compare
PP_3064 +1.0 1.5 Phage tail protein compare
PP_4910 +1.0 2.0 conserved protein of unknown function compare
PP_3766 +1.0 2.5 Lactoylglutathione lyase compare
PP_1556 +0.9 1.1 conserved protein of unknown function compare
PP_0240 +0.9 2.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2864 +0.9 2.6 conserved protein of unknown function compare
PP_1508 +0.9 2.8 conserved protein of unknown function compare
PP_5022 +0.9 1.7 Glutamine transport ATP-binding protein GlnQ compare
PP_0852 +0.9 3.0 Transcriptional regulator, Cro/CI family compare
PP_3043 +0.9 1.9 conserved protein of unknown function compare
PP_5648 +0.9 1.3 conserved exported protein of unknown function compare
PP_1428 +0.9 1.0 Sigma factor AlgU negative regulatory protein compare
PP_3447 +0.9 1.0 conserved membrane protein of unknown function compare
PP_2330 +0.9 2.0 conserved protein of unknown function compare
PP_4213 +0.9 1.9 putative dipeptidase compare
PP_0905 +0.9 1.4 conserved exported protein of unknown function compare
PP_4396 +0.9 1.8 conserved protein of unknown function compare
PP_4936 +0.9 3.4 O-antigen polymerase compare
PP_2718 +0.9 2.1 arsenic resistance transcriptional regulator compare
PP_1690 +0.8 2.2 conserved protein of unknown function compare
PP_5621 +0.8 1.3 protein of unknown function compare
PP_1512 +0.8 1.3 conserved protein of unknown function compare
PP_0319 +0.8 1.5 conserved protein of unknown function compare
PP_2675 +0.8 2.2 Cytochrome c-type protein compare
PP_5230 +0.8 1.9 Tyrosine recombinase XerC compare
PP_2676 +0.8 3.3 putative Periplasmic binding protein compare
PP_3757 +0.8 2.0 Chemotaxis protein CheY compare
PP_1872 +0.8 4.1 glutamate-pyruvate aminotransferase compare
PP_4073 +0.8 2.1 conserved exported protein of unknown function compare
PP_4271 +0.8 0.8 conserved protein of unknown function compare
PP_5191 +0.8 2.0 conserved exported protein of unknown function compare
PP_0513 +0.8 1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1812 +0.8 1.0 conserved protein of unknown function compare
PP_2668 +0.8 1.2 ABC efflux transporter, ATP-binding protein compare
PP_2650 +0.8 1.8 putative 4-hydroxybutyrate dehydrogenase compare
PP_0886 +0.8 1.3 conserved exported protein of unknown function compare
PP_4151 +0.8 2.1 Excisionase domain protein compare
PP_5667 +0.8 1.4 putative microcin B17-like-processing protein, McbC family compare
PP_3989 +0.8 2.1 DNA-cytosine methyltransferase compare
PP_5600 +0.8 1.1 conserved protein of unknown function compare
PP_5218 +0.7 1.6 DedA family protein compare
PP_4814 +0.7 2.3 ATP-dependent protease La domain protein compare
PP_3024 +0.7 1.9 conserved protein of unknown function compare
PP_5745 +0.7 2.7 paraquat-inducible protein A compare
PP_2765 +0.7 1.7 putative Sulfonate monooxygenase MsuD compare
PP_0007 +0.7 2.1 conserved hypothetical protein compare
PP_3531 +0.7 3.2 conserved exported protein of unknown function compare
PP_3040 +0.7 1.2 Pyocin R2_PP, holin compare
PP_4504 +0.7 0.8 conserved exported protein of unknown function compare
PP_0760 +0.7 1.4 conserved membrane protein of unknown function compare
PP_1328 +0.7 1.5 Protein MraZ compare
PP_3726 +0.7 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_5674 +0.7 1.2 conserved protein of unknown function compare
PP_5487 +0.7 1.8 conserved protein of unknown function compare
PP_3610 +0.7 1.9 conserved protein of unknown function compare
PP_1906 +0.7 1.3 ribosomal large subunit pseudouridine synthase C compare
PP_3614 +0.7 2.5 conserved membrane protein of unknown function compare
PP_4555 +0.7 0.9 conserved protein of unknown function compare
PP_2978 +0.7 1.9 conserved protein of unknown function compare
PP_5140 +0.7 1.6 Transcriptional regulator, MerR family compare
PP_3519 +0.7 0.8 putative Lipoprotein compare
PP_1623 +0.7 4.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_5541 +0.7 2.1 conserved protein of unknown function compare
PP_1573 +0.7 3.0 putative Major tail protein compare
PP_2503 +0.7 1.7 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0640 +0.7 1.4 conserved protein of unknown function compare
PP_2848 +0.7 1.8 urease accessory protein compare
PP_4847 +0.7 1.9 chaperone modulatory of CbpA co-chaperone protein compare
PP_2510 +0.7 1.2 conserved protein of unknown function compare
PP_3320 +0.7 1.5 conserved protein of unknown function compare
PP_2647 +0.7 3.7 Major facilitator family transporter compare
PP_5224 +0.7 1.1 conserved protein of unknown function compare
PP_0677 +0.7 1.3 putative Lipoprotein compare
PP_4069 +0.7 1.3 conserved protein of unknown function compare
PP_0891 +0.7 1.8 conserved exported protein of unknown function compare
PP_2411 +0.7 2.3 Major facilitator family transporter compare
PP_3398 +0.7 1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2138 +0.7 2.6 conserved protein of unknown function compare
PP_4835 +0.7 1.4 conserved exported protein of unknown function compare
PP_2856 +0.7 2.9 conserved exported protein of unknown function compare
PP_2217 +0.7 1.1 enoyl-CoA hydratase compare
PP_2572 +0.7 1.8 conserved protein of unknown function compare
PP_2655 +0.7 1.2 conserved protein of unknown function compare
PP_0882 +0.7 2.7 dipeptide ABC transporter - periplasmic binding protein compare
PP_0048 +0.7 0.8 conserved protein of unknown function compare
PP_3480 +0.7 1.1 conserved protein of unknown function compare
PP_3332 +0.7 2.2 putative cytochrome c-type protein compare
PP_3314 +0.7 1.7 Heat shock protein, HSP20 family compare
PP_4238 +0.7 1.2 conserved protein of unknown function compare
PP_3280 +0.7 1.9 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_1468 +0.7 0.8 Tyrosine recombinase XerD compare
PP_2947 +0.7 2.1 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1777 +0.7 4.3 phosphomannomutase compare
PP_4427 +0.7 2.1 Amino acid ABC transporter, permease protein compare
PP_2615 +0.7 0.7 hemolysin-coregulated protein compare
PP_0117 +0.7 2.5 Zn(2+) ABC transporter - permease subunit compare
PP_3052 +0.7 0.8 conserved protein of unknown function compare
PP_2074 +0.7 2.3 Transcriptional regulator, LysR family compare
PP_4844 +0.7 2.5 putative Urea ABC transporter, ATP-binding protein compare
PP_0432 +0.7 2.0 N-acetyl-gamma-glutamyl-phosphate reductase 1 compare
PP_4038 +0.7 2.1 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4760 +0.6 1.4 Alcohol dehydrogenase, zinc-containing compare
PP_1877 +0.6 2.7 free methionine-(R)-sulfoxide reductase compare
PP_2716 +0.6 0.9 arsenate reductase compare
PP_0063 +0.6 1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2749 +0.6 2.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1401 +0.6 2.7 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_2077 +0.6 1.7 diaminopimelate decarboxylase compare
PP_0401 +0.6 1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_3758 +0.6 2.4 Response regulator/sensor histidine kinase compare
PP_2003 +0.6 1.5 conserved protein of unknown function compare
PP_0585 +0.6 0.7 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2907 +0.6 1.0 DNA-binding response regulator compare
PP_5315 +0.6 2.1 Rubredoxin-1 compare
PP_5109 +0.6 2.6 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_2979 +0.6 2.2 conserved protein of unknown function compare
PP_1827 +0.6 2.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_2826 +0.6 1.0 Transcriptional regulator MexT compare
PP_1122 +0.6 0.8 OmpA family protein compare
PP_4102 +0.6 1.9 conserved protein of unknown function compare
PP_2028 +0.6 1.9 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4332 +0.6 1.3 Chemotaxis protein CheW compare
PP_4944 +0.6 1.5 Carbamoyltransferase compare
PP_5232 +0.6 1.3 conserved protein of unknown function compare
PP_4669 +0.6 1.1 OmpA family protein compare
PP_4004 +0.6 1.3 DNA translocase FtsK compare
PP_1706 +0.6 1.9 Nitrite reductase compare
PP_3738 +0.6 1.5 putative Transcriptional regulator VanR compare
PP_5486 +0.6 1.0 conserved protein of unknown function compare
PP_1415 +0.6 1.3 putative membrane associated enzyme subunit compare
PP_4887 +0.6 1.7 conserved protein of unknown function compare
PP_1267 +0.6 2.5 toxin endoribonuclease of toxin antitoxin system SohB(PrlF)-YhaV compare
PP_4207 +0.6 0.8 conserved protein of unknown function compare
PP_0999 +0.6 1.1 carbamate kinase compare
PP_3353 +0.6 1.7 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_1476 +0.6 2.0 conserved protein of unknown function compare
PP_3127 +0.6 2.2 putative Exopolysaccharide transport protein compare
PP_1646 +0.6 1.6 putative Thioredoxin compare
PP_4981 +0.6 0.8 polyisoprene-binding protein, acidic stress response factor compare
PP_1763 +0.6 1.2 putative oxidoreductase compare
PP_1349 +0.6 2.3 ATP:cob(I)alamin adenosyltransferase compare
PP_0137 +0.6 2.4 glutamate/aspartate-proton DAACS transporter compare
PP_5633 +0.6 1.6 conserved protein of unknown function compare
PP_0156 +0.6 1.6 pyridine nucleotide transhydrogenase subunit alpha compare
PP_4697 +0.6 0.8 poly(A) polymerase compare
PP_5472 +0.6 2.2 conserved exported protein of unknown function compare
PP_2210 +0.6 1.9 LysR family transcriptional regulator compare
PP_1558 +0.6 2.3 conserved protein of unknown function compare
PP_0960 +0.6 1.6 phospholipid ABC transporter binding protein compare
PP_0971 +0.6 1.9 conserved protein of unknown function compare
PP_4251 +0.6 1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_0407 +0.6 1.8 DnaJ-like protein DjlA compare
PP_3589 +0.6 1.7 serine:H+ symport permease, threonine-insensitive compare
PP_4253 +0.6 0.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0685 +0.6 0.7 conserved protein of unknown function compare
PP_4929 +0.6 2.0 Transcriptional regulator, LysR family compare
PP_0913 +0.6 1.8 conserved exported protein of unknown function compare
PP_3467 +0.6 1.8 Sigma-54 dependent transcriptional regulator compare
PP_1362 +0.6 0.9 pyruvate kinase II compare
PP_1242 +0.5 1.6 conserved protein of unknown function compare
PP_3926 +0.5 0.7 short-chain dehydrogenase compare
PP_4616 +0.5 1.2 conserved protein of unknown function compare
PP_3054 +0.5 1.2 Pyocin R2_PP, baseplate/tail fiber protein compare
PP_5267 +0.5 1.0 putative cytochrome c5 compare
PP_4811 +0.5 1.7 Gamma-glutamyl phosphate reductase compare
PP_0797 +0.5 1.5 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms