Experiment set19IT086 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0967 -7.3 -5.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0673 -7.3 -3.1 conserved protein of unknown function compare
PP_0677 -7.1 -3.5 putative Lipoprotein compare
PP_0291 -6.6 -4.5 conserved protein of unknown function compare
PP_2718 -6.6 -2.8 arsenic resistance transcriptional regulator compare
PP_0293 -6.4 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.9 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_3511 -5.9 -9.4 Branched-chain-amino-acid aminotransferase compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_2370 -5.7 -3.4 conserved protein of unknown function compare
PP_1826 -5.7 -3.1 Hydrolase, isochorismatase family compare
PP_0083 -5.7 -3.9 tryptophan synthase beta chain compare
PP_2720 -5.6 -1.4 conserved protein of unknown function compare
PP_0422 -5.3 -5.6 Indole-3-glycerol phosphate synthase compare
PP_1268 -5.2 -3.1 putative HtrA suppressor protein sohA compare
PP_2088 -5.2 -3.1 RNA polymerase sigma factor SigX compare
PP_0292 -5.1 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5289 -5.1 -4.9 Acetylglutamate kinase compare
PP_0289 -5.0 -9.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4679 -4.9 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -4.9 -11.1 homoserine O-acetyltransferase compare
PP_2371 -4.8 -8.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1988 -4.8 -7.4 3-isopropylmalate dehydrogenase compare
PP_0276 -4.8 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5128 -4.7 -7.9 Dihydroxy-acid dehydratase compare
PP_5610 -4.7 -1.6 protein of unknown function compare
PP_3999 -4.7 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4271 -4.6 -1.1 conserved protein of unknown function compare
PP_4696 -4.5 -4.4 Nitrogen regulation protein NR(I) compare
PP_5015 -4.5 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2001 -4.4 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_0184 -4.3 -7.9 Argininosuccinate lyase compare
PP_4678 -4.2 -9.8 Ketol-acid reductoisomerase compare
PP_1088 -4.1 -9.7 Argininosuccinate synthase compare
PP_0274 -4.1 -1.4 putative transcriptional regulator containing HTH domain compare
PP_2327 -4.1 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -4.0 -9.7 2-isopropylmalate synthase compare
PP_4804 -4.0 -2.8 RlpA-like lipoprotein compare
PP_3239 -4.0 -2.9 putative cointegrate resolution protein T Tn4652 compare
PP_2136 -4.0 -6.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0846 -4.0 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_1650 -3.9 -27.0 Sensor protein GacS compare
PP_4680 -3.9 -9.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -3.9 -6.7 Histidinol dehydrogenase compare
PP_5155 -3.9 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0417 -3.8 -11.2 Anthranilate synthase component 1 compare
PP_2145 -3.8 -2.6 beta-N-acetylglucosaminidase compare
PP_0965 -3.8 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4122 -3.8 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5393 -3.8 -1.3 putative metal-binding chaperone compare
PP_1995 -3.7 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1898 -3.7 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4890 -3.7 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4364 -3.6 -3.3 putative Anti-sigma F factor antagonist compare
PP_4099 -3.6 -29.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1418 -3.5 -6.3 putative Tricarboxylate transport protein TctC conserved
PP_1420 -3.5 -5.1 Transcriptional regulatory protein tctD conserved
PP_1421 -3.5 -5.4 putative Sensor histidine kinase TctE conserved
PP_1231 -3.5 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2137 -3.5 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_0801 -3.4 -1.2 conserved exported protein of unknown function compare
PP_3726 -3.4 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_5098 -3.3 -4.8 methionine biosynthesis protein MetW compare
PP_3580 -3.3 -2.6 conserved protein of unknown function compare
PP_5014 -3.3 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_1237 -3.2 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2168 -3.2 -6.8 Transaldolase compare
PP_1079 -3.2 -3.2 Ornithine carbamoyltransferase compare
PP_1097 -3.0 -1.0 Methionine--tRNA ligase compare
PP_4797 -3.0 -2.1 conserved protein of unknown function compare
PP_4296 -3.0 -1.7 conserved exported protein of unknown function compare
PP_4785 -2.9 -3.9 conserved exported protein of unknown function compare
PP_0787 -2.9 -2.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5571 -2.9 -1.4 conserved protein of unknown function compare
PP_5185 -2.9 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1528 -2.8 -1.6 conserved protein of unknown function compare
PP_3105 -2.7 -1.6 conserved membrane protein of unknown function compare
PP_0421 -2.7 -5.0 Anthranilate phosphoribosyltransferase compare
PP_3808 -2.6 -1.6 Antibiotic synthesis protein MbtH compare
PP_1664 -2.6 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_2668 -2.6 -1.5 ABC efflux transporter, ATP-binding protein compare
PP_4130 -2.6 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5505 -2.6 -2.0 conserved transmembrane protein of unknown function compare
PP_3892 -2.6 -1.2 conserved protein of unknown function compare
PP_4848 -2.5 -2.6 Curved DNA-binding protein compare
PP_1985 -2.5 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_0368 -2.5 -6.6 putative Acyl-CoA dehydrogenase compare
PP_0949 -2.4 -4.8 putative ATP-binding protein UPF0042 compare
PP_4994 -2.4 -2.2 conserved protein of unknown function compare
PP_5095 -2.4 -1.2 pyrroline-5-carboxylate reductase compare
PP_0937 -2.4 -3.4 endoribonuclease G (RNAse G) compare
PP_5317 -2.4 -3.3 Probable chorismate pyruvate-lyase compare
PP_4129 -2.3 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1702 -2.3 -3.3 Recombination-associated protein RdgC compare
PP_1476 -2.3 -4.6 conserved protein of unknown function compare
PP_5552 -2.2 -1.6 conserved protein of unknown function compare
PP_4964 -2.2 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0509 -2.2 -1.9 conserved protein of unknown function compare
PP_1198 -2.2 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1764 -2.2 -2.6 Phosphoglycolate phosphatase 2 compare
PP_4131 -2.2 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_4808 -2.1 -1.4 23S rRNA m3psi1915 methyltransferase compare
PP_1348 -2.1 -3.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4722 -2.1 -2.7 Transcription elongation factor GreA compare
PP_5104 -2.1 -3.3 thiazole synthase compare
PP_5217 -2.0 -5.8 Polyphosphate kinase compare
PP_5367 -2.0 -2.5 Transketolase domain protein compare
PP_5267 -2.0 -1.3 putative cytochrome c5 compare
PP_4909 -2.0 -4.0 phosphoserine phosphatase compare
PP_4902 -2.0 -2.1 Oligoribonuclease compare
PP_1548 -2.0 -2.4 conserved protein of unknown function compare
PP_4124 -2.0 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_1783 -2.0 -1.4 dTDP-glucose pyrophosphorylase compare
PP_2142 -2.0 -1.5 Cell division inhibitor SulA compare
PP_1261 -1.9 -2.6 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4782 -1.9 -2.1 Phosphomethylpyrimidine kinase compare
PP_4910 -1.9 -2.0 conserved protein of unknown function compare
PP_0420 -1.9 -4.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4531 -1.9 -1.8 conserved exported protein of unknown function compare
PP_4518 -1.9 -3.4 conserved protein of unknown function compare
PP_1656 -1.9 -7.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4824 -1.8 -4.5 Sensor histidine kinase/response regulator compare
PP_5227 -1.8 -4.6 diaminopimelate decarboxylase compare
PP_4582 -1.8 -3.2 conserved membrane protein of unknown function compare
PP_4695 -1.8 -5.6 Sensory box histidine kinase compare
PP_4480 -1.8 -4.0 arginine N-succinyltransferase, subunit alpha compare
PP_2214 -1.8 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3411 -1.8 -1.3 conserved protein of unknown function compare
PP_0959 -1.8 -1.7 phospholipid ABC transporter compare
PP_1912 -1.8 -2.9 Phosphate acyltransferase compare
PP_2203 -1.7 -1.4 conserved protein of unknown function compare
PP_2494 -1.7 -2.4 conserved protein of unknown function compare
PP_0048 -1.7 -1.0 conserved protein of unknown function compare
PP_5473 -1.7 -1.8 putative transcriptional regulator, LuxR family compare
PP_3000 -1.7 -1.8 MaoC domain protein compare
PP_1770 -1.7 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5329 -1.7 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_1833 -1.7 -2.3 conserved protein of unknown function compare
PP_5303 -1.6 -2.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4126 -1.6 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_2700 -1.6 -2.3 AhpC/TSA family protein compare
PP_1552 -1.6 -1.9 putative Phage replication protein compare
PP_1001 -1.6 -2.2 arginine deiminase compare
PP_1326 -1.6 -2.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1655 -1.6 -2.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1310 -1.6 -1.1 conserved hypothetical protein compare
PP_2882 -1.6 -2.0 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_2302 -1.5 -3.2 DNA-binding, ATP-dependent protease compare
PP_0536 -1.5 -1.4 conserved protein of unknown function compare
PP_3378 -1.5 -1.0 putative 2-ketogluconokinase compare
PP_2081 -1.5 -3.1 putative phosphoenolpyruvate synthase regulatory protein compare
PP_2307 -1.5 -1.6 conserved protein of unknown function compare
PP_0434 -1.5 -2.7 Anhydro-N-acetylmuramic acid kinase compare
PP_5114 -1.5 -1.0 putative adenine methyltransferase compare
PP_1291 -1.5 -4.0 PhoH family protein compare
PP_4830 -1.5 -2.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_3903 -1.5 -1.6 conserved protein of unknown function compare
PP_0377 -1.5 -1.0 coenzyme PQQ synthesis protein D compare
PP_5321 -1.5 -3.3 two-component system sensory histidine kinase compare
PP_4159 -1.5 -2.2 Potassium-transporting ATPase C chain compare
PP_5648 -1.5 -1.6 conserved exported protein of unknown function compare
PP_4120 -1.5 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_0512 -1.5 -1.1 hypothetical protein compare
PP_5058 -1.5 -2.9 Carboxy-terminal-processing protease compare
PP_2032 -1.4 -2.8 putative ATPase compare
PP_0891 -1.4 -2.0 conserved exported protein of unknown function compare
PP_5027 -1.4 -1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2402 -1.4 -1.3 putative Sensor histidine kinase compare
PP_1493 -1.4 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0948 -1.4 -1.1 Phosphocarrier protein HPr compare
PP_2880 -1.4 -1.3 Transcriptional regulator, TetR family compare
PP_3204 -1.4 -0.9 conserved protein of unknown function compare
PP_5066 -1.4 -1.8 K(+)/H(+) antiporter NhaP2 compare
PP_2023 -1.4 -1.8 Glutathione S-transferase family protein compare
PP_0090 -1.4 -1.4 conserved exported protein of unknown function compare
PP_4699 -1.4 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3064 -1.4 -1.8 Phage tail protein compare
PP_1233 -1.4 -2.2 sulfurtransferase compare
PP_4892 -1.4 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1813 -1.4 -2.3 ComEA-related protein compare
PP_0209 -1.3 -1.9 ATP-binding taurine transporter subunit compare
PP_1062 -1.3 -1.6 MutT/nudix family protein compare
PP_5201 -1.3 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_1654 -1.3 -1.6 cysteine synthase B compare
PP_5313 -1.3 -1.2 DNA-binding protein HU-alpha compare
PP_5093 -1.3 -0.9 twitching motility protein compare
PP_5295 -1.3 -1.3 conserved protein of unknown function compare
PP_4937 -1.3 -1.3 toluene tolerance protein compare
PP_0290 -1.3 -1.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5035 -1.3 -2.0 Histidine utilization repressor compare
PP_4917 -1.3 -2.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4504 -1.3 -1.0 conserved exported protein of unknown function compare
PP_1190 -1.2 -1.4 conserved protein of unknown function compare
PP_2568 -1.2 -0.9 Ring-cleaving dioxygenase compare
PP_3926 -1.2 -0.7 short-chain dehydrogenase compare
PP_1004 -1.2 -1.3 conserved protein of unknown function compare
PP_t49 -1.2 -3.1 tRNA-Met compare
PP_2908 -1.2 -1.8 DNA-binding transcriptional repressor compare


Specific Phenotypes

For 3 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms