Experiment set19IT084 for Pseudomonas putida KT2440

Compare to:

Growth at pH8 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -6.6 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_2371 -6.2 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1986 -6.1 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0422 -5.9 -7.0 Indole-3-glycerol phosphate synthase compare
PP_1988 -5.9 -10.5 3-isopropylmalate dehydrogenase compare
PP_0083 -5.8 -4.0 tryptophan synthase beta chain compare
PP_1568 -5.6 -1.8 conserved protein of unknown function compare
PP_1468 -5.5 -3.4 Tyrosine recombinase XerD compare
PP_4678 -5.3 -16.2 Ketol-acid reductoisomerase compare
PP_0967 -5.3 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -4.9 -8.2 tryptophan synthase alpha chain compare
PP_4696 -4.9 -3.4 Nitrogen regulation protein NR(I) compare
PP_0290 -4.9 -8.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1421 -4.9 -7.7 putative Sensor histidine kinase TctE conserved
PP_5098 -4.8 -8.2 methionine biosynthesis protein MetW compare
PP_4680 -4.7 -15.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5303 -4.7 -6.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1079 -4.6 -6.4 Ornithine carbamoyltransferase compare
PP_0289 -4.6 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -4.6 -6.0 Acetylglutamate kinase compare
PP_5097 -4.6 -12.1 homoserine O-acetyltransferase compare
PP_0184 -4.5 -8.2 Argininosuccinate lyase compare
PP_2001 -4.5 -8.8 O-succinylhomoserine sulfhydrylase compare
PP_2370 -4.3 -3.6 conserved protein of unknown function compare
PP_3511 -4.3 -6.4 Branched-chain-amino-acid aminotransferase compare
PP_1898 -4.2 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4909 -4.2 -8.4 phosphoserine phosphatase compare
PP_0292 -4.1 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2327 -4.1 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1420 -4.0 -5.9 Transcriptional regulatory protein tctD conserved
PP_0421 -4.0 -6.9 Anthranilate phosphoribosyltransferase compare
PP_3999 -3.9 -8.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1231 -3.8 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1088 -3.8 -10.6 Argininosuccinate synthase compare
PP_1025 -3.7 -9.9 2-isopropylmalate synthase compare
PP_0417 -3.7 -14.2 Anthranilate synthase component 1 compare
PP_0966 -3.6 -8.4 Histidinol dehydrogenase compare
PP_5128 -3.6 -6.7 Dihydroxy-acid dehydratase compare
PP_1912 -3.6 -6.1 Phosphate acyltransferase compare
PP_4679 -3.6 -5.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -3.6 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5701 -3.5 -2.1 conserved protein of unknown function compare
PP_4517 -3.3 -3.1 conserved protein of unknown function compare
PP_0959 -3.2 -3.3 phospholipid ABC transporter compare
PP_5014 -3.1 -3.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2402 -3.0 -3.5 putative Sensor histidine kinase compare
PP_1995 -3.0 -6.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4964 -2.8 -5.0 D-erythrose 4-phosphate dehydrogenase compare
PP_2328 -2.8 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_5185 -2.8 -4.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4890 -2.8 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4364 -2.7 -3.8 putative Anti-sigma F factor antagonist compare
PP_1418 -2.7 -6.5 putative Tricarboxylate transport protein TctC conserved
PP_5350 -2.7 -4.1 Transcriptional regulator, RpiR family compare
PP_4994 -2.7 -4.3 conserved protein of unknown function compare
PP_1654 -2.7 -3.8 cysteine synthase B compare
PP_0787 -2.6 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2336 -2.6 -4.5 aconitate hydratase 1 compare
PP_0914 -2.6 -7.3 GGDEF domain protein compare
PP_2168 -2.5 -7.0 Transaldolase compare
PP_5095 -2.5 -1.6 pyrroline-5-carboxylate reductase compare
PP_4785 -2.4 -4.5 conserved exported protein of unknown function compare
PP_4874 -2.4 -1.8 50S ribosomal protein L9 compare
PP_5155 -2.4 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1826 -2.3 -2.4 Hydrolase, isochorismatase family compare
PP_5217 -2.3 -8.6 Polyphosphate kinase compare
PP_4804 -2.2 -3.8 RlpA-like lipoprotein compare
PP_2088 -2.2 -2.2 RNA polymerase sigma factor SigX compare
PP_3484 -2.2 -3.5 Response regulator receiver protein compare
PP_0035 -2.2 -3.8 putative bactoprenol-linked glycose transferase compare
PP_1045 -2.1 -1.8 Type II secretion pathway protein XcpP compare
PP_4695 -2.1 -7.0 Sensory box histidine kinase compare
PP_1237 -2.1 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4700 -2.1 -2.4 pantothenate synthetase compare
PP_4782 -2.0 -3.5 Phosphomethylpyrimidine kinase compare
PP_4701 -2.0 -1.2 glucose-6-phosphate isomerase compare
PP_1733 -2.0 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4943 -1.9 -3.0 putative Glycosyl transferase compare
PP_0420 -1.9 -5.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0735 -1.8 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_0291 -1.8 -1.5 conserved protein of unknown function compare
PP_5327 -1.7 -2.9 putative phosphate ABC transporter, permease subunit compare
PP_1783 -1.7 -2.5 dTDP-glucose pyrophosphorylase compare
PP_2378 -1.7 -2.3 Fe/S biogenesis protein NfuA compare
PP_1215 -1.7 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_2253 -1.7 -3.0 Transcriptional regulator, GntR family compare
PP_1553 -1.7 -1.4 conserved protein of unknown function compare
PP_1303 -1.6 -3.6 Sulfate adenylyltransferase subunit 2 compare
PP_0022 -1.6 -1.2 hypothetical protein compare
PP_1128 -1.6 -3.0 OmpA family protein compare
PP_3506 -1.6 -2.8 Magnesium chelatase, subunit ChII compare
PP_1824 -1.6 -1.3 Smr domain protein compare
PP_4824 -1.5 -4.9 Sensor histidine kinase/response regulator compare
PP_2756 -1.5 -3.0 conserved protein of unknown function compare
PP_0393 -1.5 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5216 -1.5 -1.4 exopolyphosphatase compare
PP_1664 -1.5 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5203 -1.5 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_5015 -1.5 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4122 -1.5 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0547 -1.5 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1428 -1.5 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_1233 -1.4 -2.5 sulfurtransferase compare
PP_0630 -1.4 -1.1 DNA gyrase inhibitor YacG compare
PP_3102 -1.4 -2.3 conserved protein of unknown function compare
PP_0065 -1.4 -2.1 NAD-binding component of TrK potassium transporter compare
PP_4720 -1.4 -0.8 putative RNA binding protein compare
PP_3233 -1.4 -2.7 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_0368 -1.3 -7.0 putative Acyl-CoA dehydrogenase compare
PP_0356 -1.3 -4.1 malate synthase G compare
PP_4895 -1.3 -2.5 tRNA dimethylallyltransferase compare
PP_3508 -1.3 -3.1 Protein CobW compare
PP_2375 -1.3 -6.2 cobalamin-dependent methionine synthase compare
PP_2530 -1.2 -1.8 conserved protein of unknown function compare
PP_4977 -1.2 -4.7 5,10-methylenetetrahydrofolate reductase compare
PP_t49 -1.2 -4.1 tRNA-Met compare
PP_4505 -1.2 -3.1 Sensor histidine kinase compare
PP_5644 -1.2 -1.9 conserved membrane protein of unknown function compare
PP_5008 -1.2 -1.4 Poly granule-associated protein compare
PP_0833 -1.2 -1.5 queuine tRNA-ribosyltransferase compare
PP_1124 -1.2 -2.4 conserved membrane protein of unknown function compare
PP_4058 -1.2 -5.0 1,4-alpha-glucan branching enzyme compare
PP_4262 -1.2 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5310 -1.2 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_5104 -1.2 -4.5 thiazole synthase compare
PP_2302 -1.2 -3.1 DNA-binding, ATP-dependent protease compare
PP_5058 -1.2 -2.8 Carboxy-terminal-processing protease compare
PP_1164 -1.2 -1.9 Transcriptional regulator, LysR family compare
PP_1734 -1.2 -2.7 Probable septum site-determining protein MinC compare
PP_3365 -1.2 -1.1 Acetolactate synthase compare
PP_4126 -1.2 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_1677 -1.2 -2.1 Adenosyl-cobyric acid synthase compare
PP_4480 -1.2 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_0377 -1.1 -1.8 coenzyme PQQ synthesis protein D compare
PP_2137 -1.1 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_2136 -1.1 -2.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5491 -1.1 -2.0 conserved protein of unknown function with SEC-C motif domain compare
PP_1208 -1.1 -1.3 conserved protein of unknown function, SlyX family compare
PP_3590 -1.1 -3.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2878 -1.1 -1.8 conserved protein of unknown function compare
PP_3693 -1.1 -3.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1322 -1.1 -1.5 putative Lipoprotein compare
PP_5609 -1.1 -1.1 conserved protein of unknown function compare
PP_3524 -1.1 -2.9 conserved protein of unknown function compare
PP_3241 -1.1 -1.2 conserved exported protein of unknown function compare
PP_4726 -1.1 -1.5 Chaperone protein DnaJ compare
PP_1366 -1.1 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1655 -1.1 -2.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0627 -1.1 -2.0 conserved protein of unknown function compare
PP_4419 -1.0 -1.8 transposase compare
PP_t29 -1.0 -1.5 tRNA-Ala compare
PP_4693 -1.0 -2.7 RNA polymerase-binding transcription factor DksA compare
PP_4004 -1.0 -2.1 DNA translocase FtsK compare
PP_1021 -1.0 -2.9 DNA-binding transcriptional regulator compare
PP_2388 -1.0 -1.3 Transporter, LysE family compare
PP_2883 -1.0 -1.5 conserved protein of unknown function compare
PP_1005 -1.0 -2.3 Heme oxygenase compare
PP_5639 -1.0 -4.5 conserved exported protein of unknown function compare
PP_4124 -1.0 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_2345 -1.0 -2.7 conserved exported protein of unknown function compare
PP_3649 -1.0 -1.7 Transcriptional regulator, GntR family compare
PP_1304 -1.0 -4.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4099 -1.0 -9.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3766 -1.0 -1.5 Lactoylglutathione lyase compare
PP_3829 -1.0 -2.3 Molybdenum transport system permease protein ModB compare
PP_5471 -0.9 -1.1 putative response regulator receiver protein compare
PP_0002 -0.9 -3.5 probable chromosome partition protein compare
PP_5202 -0.9 -1.5 putative cell division protein compare
PP_5039 -0.9 -2.4 conserved protein of unknown function compare
PP_0439 -0.9 -1.9 conserved protein of unknown function compare
PP_0962 -0.9 -2.6 toluene-tolerance protein compare
PP_3105 -0.9 -0.9 conserved membrane protein of unknown function compare
PP_0138 -0.9 -4.9 conserved membrane protein of unknown function compare
PP_1656 -0.9 -3.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_2441 -0.9 -1.5 conserved protein of unknown function compare
PP_2520 -0.9 -2.3 conserved protein of unknown function compare
PP_2326 -0.9 -4.2 Universal stress protein compare
PP_5453 -0.9 -1.0 conserved protein of unknown function compare
PP_1637 -0.9 -2.2 Transcriptional regulator, LysR family compare
PP_2280 -0.9 -2.0 conserved protein of unknown function compare
PP_1430 -0.9 -4.9 putative periplasmic serine endoprotease DegP-like compare
PP_3051 -0.9 -3.1 Pyocin R2_PP, tail spike protein compare
PP_0276 -0.9 -0.8 Transcriptional regulator, Cro/CI family compare
PP_4130 -0.9 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0484 -0.9 -3.3 transporter of an unknown substrate compare
PP_5073 -0.9 -1.4 conserved exported protein of unknown function compare
PP_3643 -0.9 -2.9 putative Oxidoreductase compare
PP_0147 -0.9 -4.9 Citrate transporter conserved
PP_4365 -0.9 -2.7 Flagellar protein FliJ compare
PP_1326 -0.9 -1.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4481 -0.9 -3.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1702 -0.9 -2.2 Recombination-associated protein RdgC compare
PP_0948 -0.9 -1.1 Phosphocarrier protein HPr compare
PP_2929 -0.9 -3.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0195 -0.9 -1.7 conserved protein of unknown function compare
PP_4699 -0.9 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5227 -0.9 -3.2 diaminopimelate decarboxylase compare
PP_3294 -0.9 -3.1 Universal stress protein family compare
PP_5156 -0.9 -2.7 conserved exported protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms