Experiment set19IT081 for Pseudomonas simiae WCS417

Compare to:

Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -4.8 -1.6 formyltetrahydrofolate deformylase compare
PS417_27865 -4.2 -3.8 LysR family transcriptional regulator compare
PS417_24585 -3.5 -10.2 AMP nucleosidase compare
PS417_08155 -2.9 -2.1 integration host factor subunit beta compare
PS417_21630 -2.9 -3.9 magnesium transporter compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_00345 -2.7 -3.1 copper-binding protein compare
PS417_00385 -2.7 -1.6 Fur family transcriptional regulator compare
PS417_26985 -2.7 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26990 -2.7 -1.2 RNA pyrophosphohydrolase compare
PS417_23375 -2.5 -2.5 cytochrome C oxidase compare
PS417_23770 -2.4 -2.3 exodeoxyribonuclease V subunit alpha compare
PS417_01915 -2.3 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23025 -2.3 -6.6 murein transglycosylase compare
PS417_21430 -2.2 -2.7 3-oxoacyl-ACP synthase compare
PS417_18310 -2.0 -2.3 hypothetical protein compare
PS417_06680 -2.0 -6.5 nuclease PIN compare
PS417_03560 -2.0 -2.2 GTP-binding protein compare
PS417_15095 -1.9 -3.8 hypothetical protein compare
PS417_23775 -1.9 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_22450 -1.8 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_27800 -1.8 -2.9 exodeoxyribonuclease III compare
PS417_06205 -1.8 -7.1 methionine aminopeptidase compare
PS417_24935 -1.8 -1.5 hypothetical protein compare
PS417_02415 -1.7 -4.4 phosphoserine phosphatase compare
PS417_08245 -1.7 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01605 -1.7 -1.5 phosphoglycerate mutase compare
PS417_08540 -1.7 -2.8 RNA helicase compare
PS417_20855 -1.6 -1.5 hypothetical protein compare
PS417_08335 -1.6 -2.3 hypothetical protein compare
PS417_03455 -1.5 -1.6 type III secretion protein compare
PS417_06375 -1.5 -0.9 deoxycytidine triphosphate deaminase compare
PS417_00755 -1.5 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_23805 -1.5 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_28070 -1.5 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_13855 -1.5 -1.5 acetyl-CoA acetyltransferase compare
PS417_02975 -1.5 -4.1 3-dehydroquinate dehydratase compare
PS417_15105 -1.4 -4.7 membrane protein compare
PS417_24745 -1.4 -2.9 gamma-glutamyl phosphate reductase compare
PS417_26645 -1.4 -2.0 chemotaxis protein compare
PS417_20610 -1.4 -1.8 hypothetical protein compare
PS417_00185 -1.4 -3.5 tryptophan synthase subunit beta compare
PS417_19955 -1.4 -2.2 hypothetical protein compare
PS417_07640 -1.3 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_28145 -1.3 -2.1 AraC family transcriptional regulator compare
PS417_15770 -1.3 -1.5 pyridoxine 5'-phosphate oxidase compare
PS417_02555 -1.3 -7.5 exoribonuclease R compare
PS417_04595 -1.3 -2.3 cell division protein MraZ compare
PS417_02485 -1.3 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00180 -1.2 -1.6 tryptophan synthase subunit alpha compare
PS417_01855 -1.2 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -1.2 -6.8 acetolactate synthase 3 catalytic subunit compare
PS417_19275 -1.2 -1.6 hypothetical protein compare
PS417_08135 -1.2 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15875 -1.2 -2.3 LuxR family transcriptional regulator compare
PS417_11925 -1.2 -2.2 hypothetical protein compare
PS417_16195 -1.2 -1.2 AraC family transcriptional regulator compare
PS417_27425 -1.2 -4.5 exopolyphosphatase compare
PS417_16510 -1.2 -3.4 Clp protease ClpX compare
PS417_22375 -1.1 -0.8 cold-shock protein compare
PS417_23390 -1.1 -4.2 ubiquinol oxidase subunit II compare
PS417_14245 -1.1 -2.5 hypothetical protein compare
PS417_23160 -1.1 -1.9 50S rRNA methyltransferase compare
PS417_07565 -1.1 -1.6 hypothetical protein compare
PS417_27040 -1.1 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_19350 -1.1 -2.4 GTP cyclohydrolase compare
PS417_25840 -1.0 -6.8 SpoVR family protein compare
PS417_15100 -1.0 -1.5 BatB protein compare
PS417_00175 -1.0 -1.1 CigR compare
PS417_02000 -1.0 -5.5 glutamate synthase compare
PS417_25830 -1.0 -5.2 serine/threonine protein kinase compare
PS417_04775 -1.0 -2.6 short-chain dehydrogenase compare
PS417_12805 -1.0 -5.8 glycogen branching protein compare
PS417_00045 -1.0 -1.7 glycerol acyltransferase compare
PS417_15110 -1.0 -3.0 protein BatD compare
PS417_25835 -1.0 -5.0 hypothetical protein compare
PS417_04385 -0.9 -2.2 organic solvent ABC transporter substrate-binding protein compare
PS417_02005 -0.9 -4.7 glutamate synthase compare
PS417_01620 -0.9 -1.4 preprotein translocase subunit SecB compare
PS417_12845 -0.9 -2.9 NAD(P)H dehydrogenase compare
PS417_05815 -0.9 -2.9 recombinase RecA compare
PS417_11830 -0.9 -1.9 membrane protein compare
PS417_09245 -0.9 -0.9 recombinase RdgC compare
PS417_08685 -0.9 -1.5 flagellar hook-length control protein FliK compare
PS417_05025 -0.9 -1.3 maleylacetoacetate isomerase compare
PS417_12910 -0.9 -1.7 alanine racemase compare
PS417_16555 -0.9 -0.7 cupin compare
PS417_00375 -0.9 -1.5 membrane protein compare
PS417_12795 -0.9 -5.7 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_15510 -0.9 -1.8 hypothetical protein compare
PS417_27135 -0.9 -0.7 glutamine synthetase compare
PS417_00370 -0.9 -0.9 hypothetical protein compare
PS417_06675 -0.9 -1.7 ATP-dependent helicase compare
PS417_16055 -0.9 -2.0 biopolymer transporter TolR compare
PS417_04290 -0.8 -2.1 hypothetical protein compare
PS417_06245 -0.8 -1.1 zinc metallopeptidase RseP compare
PS417_12490 -0.8 -1.5 autotransporter adhesin compare
PS417_17705 -0.8 -1.2 LacI family transcriptional regulator compare
PS417_19285 -0.8 -1.1 ankyrin compare
PS417_18455 -0.8 -1.5 hypothetical protein compare
PS417_08220 -0.8 -0.7 epimerase compare
PS417_01635 -0.8 -3.0 nitrogen regulation protein NR(I) compare
PS417_15085 -0.8 -2.4 ATPase AAA compare
PS417_12870 -0.8 -1.1 enoyl-CoA hydratase compare
PS417_18595 -0.8 -3.0 3-isopropylmalate dehydratase compare
PS417_20985 -0.8 -1.2 porin compare
PS417_22445 -0.8 -1.4 ATP-dependent DNA helicase RuvB compare
PS417_26290 -0.8 -2.6 4-hydroxybenzoyl-CoA thioesterase compare
PS417_23545 -0.7 -1.7 gamma-glutamyl kinase compare
PS417_10220 -0.7 -1.6 hypothetical protein compare
PS417_16495 -0.7 -1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_18600 -0.7 -2.0 isopropylmalate isomerase compare
PS417_26755 -0.7 -0.7 nucleoside-triphosphate diphosphatase compare
PS417_06945 -0.7 -0.9 membrane protein compare
PS417_26770 -0.7 -1.2 tRNA (guanine-N7)-methyltransferase compare
PS417_22350 -0.7 -1.6 Fis family transcriptional regulator compare
PS417_03350 -0.7 -1.9 cytochrome C peroxidase compare
PS417_00405 -0.7 -3.4 DNA polymerase I compare
PS417_05820 -0.7 -1.3 recombinase RecX compare
PS417_26790 -0.7 -2.5 peptidoglycan transglycosylase compare
PS417_06685 -0.7 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_04410 -0.7 -1.5 hypothetical protein compare
PS417_06200 -0.7 -2.7 protein-PII uridylyltransferase compare
PS417_20915 -0.7 -2.1 hypothetical protein compare
PS417_27870 -0.7 -2.0 ATP-dependent DNA helicase RecG compare
PS417_07245 -0.7 -1.4 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_27795 -0.7 -0.6 orotate phosphoribosyltransferase compare
PS417_26365 -0.7 -1.8 EmrB/QacA subfamily drug resistance transporter compare
PS417_18585 -0.7 -3.2 3-isopropylmalate dehydrogenase compare
PS417_03260 -0.7 -0.6 5S ribosomal RNA compare
PS417_11825 -0.7 -1.6 transcriptional regulator compare
PS417_17780 -0.7 -0.9 Ais protein compare
PS417_17035 -0.7 -1.0 Cro/Cl family transcriptional regulator compare
PS417_18425 -0.7 -1.1 sporulation protein compare
PS417_01750 -0.7 -0.9 histidine ammonia-lyase compare
PS417_28080 -0.7 -5.1 phosphate ABC transporter permease compare
PS417_13165 -0.7 -1.2 peroxidase compare
PS417_16715 -0.7 -0.9 DoxX family protein compare
PS417_14590 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_19425 -0.7 -0.6 allantoicase compare
PS417_18010 -0.6 -2.1 acid phosphatase compare
PS417_24500 -0.6 -1.6 DEAD/DEAH box helicase compare
PS417_07815 -0.6 -1.1 hypothetical protein compare
PS417_21065 -0.6 -0.6 3-methylitaconate isomerase compare
PS417_13235 -0.6 -2.5 siderophore biosynthesis protein compare
PS417_23755 -0.6 -1.7 membrane protein compare
PS417_28320 -0.6 -2.2 metal ABC transporter substrate-binding protein compare
PS417_19195 -0.6 -2.0 hypothetical protein compare
PS417_04220 -0.6 -0.8 4-carboxymuconolactone decarboxylase compare
PS417_01960 -0.6 -1.7 pilus assembly protein compare
PS417_23900 -0.6 -3.2 poly(A) polymerase compare
PS417_02695 -0.6 -1.0 protein hupE compare
PS417_23385 -0.6 -2.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_01640 -0.6 -2.0 histidine kinase compare
PS417_28030 -0.6 -1.6 hypothetical protein compare
PS417_28510 -0.6 -2.6 chromosome partitioning protein compare
PS417_09235 -0.6 -0.7 molecular chaperone compare
PS417_16535 -0.6 -2.0 NUDIX hydrolase compare
PS417_28075 -0.6 -2.4 phosphate ABC transporter permease compare
PS417_01920 -0.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_12855 -0.6 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23380 -0.6 -1.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_11640 -0.6 -2.6 GntR family transcriptional regulator compare
PS417_23250 -0.6 -2.7 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_12930 -0.6 -1.7 LpxA family transferase compare
PS417_16520 -0.6 -1.3 cold-shock protein compare
PS417_01590 -0.6 -1.1 polysaccharide deacetylase compare
PS417_05710 -0.6 -1.7 hypothetical protein compare
PS417_16665 -0.6 -1.1 hypothetical protein compare
PS417_04390 -0.6 -2.6 toluene tolerance protein compare
PS417_27205 -0.6 -1.8 adenylate cyclase compare
PS417_22520 -0.6 -0.7 histidine kinase compare
PS417_17650 -0.6 -1.8 proteinase compare
PS417_11950 -0.6 -0.8 hypothetical protein compare
PS417_26225 -0.6 -1.4 electron transfer flavoprotein subunit beta compare
PS417_02155 -0.6 -1.8 chemotaxis protein compare
PS417_08465 -0.6 -2.2 elongation factor GreAB compare
PS417_13660 -0.6 -2.1 AsnC family transcriptional regulator compare
PS417_10910 -0.6 -1.8 FAD-dependent oxidoreductase compare
PS417_26145 -0.6 -1.3 hypothetical protein compare
PS417_23505 -0.6 -1.9 cell division protein DedD compare
PS417_17560 -0.6 -2.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_22025 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_07765 -0.6 -1.9 hypothetical protein compare
PS417_06045 -0.6 -0.8 membrane protein compare
PS417_24115 -0.6 -0.8 hypothetical protein compare
PS417_16005 -0.6 -1.6 ATPase compare
PS417_02225 -0.6 -1.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17125 -0.5 -1.9 transcriptional regulator compare
PS417_21475 -0.5 -1.4 HAD family hydrolase compare
PS417_28220 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_26010 -0.5 -2.2 amidophosphoribosyltransferase compare
PS417_03495 -0.5 -1.1 type III secretory protein EscS compare
PS417_05165 -0.5 -1.2 cytosol aminopeptidase compare
PS417_06075 -0.5 -1.0 hypothetical protein compare
PS417_12725 -0.5 -2.1 AraC family transcriptional regulator compare
PS417_02340 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_17930 -0.5 -1.0 aldehyde dehydrogenase compare
PS417_28110 -0.5 -2.4 transglycosylase compare
PS417_01510 -0.5 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments