Experiment set19IT080 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_1898 -6.7 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1079 -6.6 -4.6 Ornithine carbamoyltransferase compare
PP_4678 -6.4 -9.8 Ketol-acid reductoisomerase compare
PP_0289 -6.2 -4.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -6.2 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.1 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -6.1 -6.0 methionine biosynthesis protein MetW compare
PP_0787 -5.9 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0290 -5.6 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3241 -5.5 -1.6 conserved exported protein of unknown function compare
PP_0082 -5.5 -3.8 tryptophan synthase alpha chain compare
PP_0184 -5.4 -3.8 Argininosuccinate lyase compare
PP_5155 -5.4 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1988 -5.3 -9.6 3-isopropylmalate dehydrogenase compare
PP_0292 -5.3 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -5.2 -14.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1421 -5.0 -7.8 putative Sensor histidine kinase TctE conserved
PP_5097 -5.0 -13.7 homoserine O-acetyltransferase compare
PP_2088 -4.9 -3.3 RNA polymerase sigma factor SigX compare
PP_2001 -4.8 -9.5 O-succinylhomoserine sulfhydrylase compare
PP_0630 -4.7 -1.4 DNA gyrase inhibitor YacG compare
PP_0417 -4.7 -15.8 Anthranilate synthase component 1 compare
PP_4909 -4.6 -4.5 phosphoserine phosphatase compare
PP_0083 -4.6 -7.0 tryptophan synthase beta chain compare
PP_5054 -4.5 -3.1 glutaredoxin 3 compare
PP_5575 -4.5 -1.8 conserved protein of unknown function compare
PP_5014 -4.5 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_5075 -4.4 -10.0 glutamate synthase (NADPH) beta subunit compare
PP_2510 -4.4 -1.8 conserved protein of unknown function compare
PP_2370 -4.4 -4.1 conserved protein of unknown function compare
PP_4679 -4.4 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -4.4 -10.8 2-isopropylmalate synthase compare
PP_5128 -4.2 -7.4 Dihydroxy-acid dehydratase compare
PP_0965 -4.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -4.2 -4.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1995 -4.1 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5076 -4.1 -14.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_1088 -4.1 -11.1 Argininosuccinate synthase compare
PP_2168 -3.9 -7.5 Transaldolase compare
PP_2371 -3.9 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3511 -3.9 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_1677 -3.9 -5.8 Adenosyl-cobyric acid synthase compare
PP_3946 -3.9 -1.6 HTH-type transcriptional repressor NicR compare
PP_4902 -3.8 -2.6 Oligoribonuclease compare
PP_2402 -3.7 -2.6 putative Sensor histidine kinase compare
PP_4785 -3.7 -5.4 conserved exported protein of unknown function compare
PP_1912 -3.7 -6.0 Phosphate acyltransferase compare
PP_0846 -3.7 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_4890 -3.6 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_2306 -3.6 -1.9 conserved exported protein of unknown function compare
PP_5303 -3.6 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0422 -3.5 -3.8 Indole-3-glycerol phosphate synthase compare
PP_4696 -3.5 -6.2 Nitrogen regulation protein NR(I) compare
PP_1654 -3.4 -4.0 cysteine synthase B compare
PP_0966 -3.4 -5.9 Histidinol dehydrogenase compare
PP_1986 -3.4 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_5000 -3.4 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_1632 -3.4 -1.8 conserved protein of unknown function compare
PP_1214 -3.3 -3.0 putative transcriptional regulatory protein compare
PP_2328 -3.3 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_1420 -3.3 -5.3 Transcriptional regulatory protein tctD conserved
PP_4994 -3.3 -4.2 conserved protein of unknown function compare
PP_0421 -3.3 -6.0 Anthranilate phosphoribosyltransferase compare
PP_4593 -3.3 -1.8 conserved protein of unknown function compare
PP_0420 -3.3 -6.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4977 -3.2 -8.9 5,10-methylenetetrahydrofolate reductase compare
PP_4964 -3.1 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0406 -3.1 -3.9 Nucleotidyltransferase family protein compare
PP_3840 -3.0 -1.5 conserved protein of unknown function compare
PP_2720 -3.0 -1.5 conserved protein of unknown function compare
PP_t10 -2.9 -1.6 tRNA-Pro compare
PP_4136 -2.9 -1.2 Transcriptional regulator, LuxR family compare
PP_4793 -2.9 -1.7 conserved protein of unknown function compare
PP_0959 -2.9 -2.7 phospholipid ABC transporter compare
PP_5185 -2.9 -4.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4253 -2.9 -3.2 cytochrome c oxidase subunit, cbb3-type compare
PP_2375 -2.8 -8.3 cobalamin-dependent methionine synthase compare
PP_4695 -2.8 -8.5 Sensory box histidine kinase compare
PP_2327 -2.8 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3409 -2.8 -2.4 putative Cobalamin biosynthesis protein cobE compare
PP_3541 -2.7 -2.9 Transporter, MgtC family compare
PP_1055 -2.7 -1.5 Type II secretion pathway protein GspN compare
PP_0735 -2.6 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_2145 -2.6 -3.5 beta-N-acetylglucosaminidase compare
PP_3411 -2.6 -1.7 conserved protein of unknown function compare
PP_0855 -2.6 -1.7 conserved protein of unknown function compare
PP_0949 -2.6 -5.8 putative ATP-binding protein UPF0042 compare
PP_5628 -2.6 -2.3 conserved protein of unknown function compare
PP_1416 -2.5 -5.6 putative Tricarboxylate transport protein TctA compare
PP_1418 -2.5 -4.5 putative Tricarboxylate transport protein TctC conserved
PP_5289 -2.5 -2.9 Acetylglutamate kinase compare
PP_5015 -2.5 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2337 -2.4 -2.5 aconitate isomerase compare
PP_0025 -2.4 -1.2 hypothetical protein compare
PP_4826 -2.4 -4.6 Precorrin-3B C17-methyltransferase compare
PP_4824 -2.4 -6.7 Sensor histidine kinase/response regulator compare
PP_5338 -2.4 -3.6 aspartate ammonia-lyase compare
PP_1231 -2.4 -3.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1417 -2.4 -2.3 putative Tricarboxylate transport protein TctB compare
PP_4942 -2.3 -2.7 conserved protein of unknown function compare
PP_1764 -2.3 -2.8 Phosphoglycolate phosphatase 2 compare
PP_1826 -2.3 -1.8 Hydrolase, isochorismatase family compare
PP_4480 -2.3 -6.2 arginine N-succinyltransferase, subunit alpha compare
PP_1922 -2.2 -3.0 conserved protein of unknown function compare
PP_1111 -2.2 -5.4 putative Synthetase compare
PP_4700 -2.2 -1.5 pantothenate synthetase compare
PP_5095 -2.2 -1.2 pyrroline-5-carboxylate reductase compare
PP_0516 -2.1 -3.2 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_1987 -2.1 -1.4 Methlytransferase, UbiE/COQ5 family compare
PP_0022 -2.1 -1.0 hypothetical protein compare
PP_1304 -2.1 -4.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1110 -2.1 -1.9 serine acetyltransferase compare
PP_1419 -2.1 -3.1 tricarboxylate-specific outer membrane porin conserved
PP_4693 -2.1 -2.4 RNA polymerase-binding transcription factor DksA compare
PP_4830 -2.0 -3.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_4131 -2.0 -5.9 NADH-quinone oxidoreductase subunit N compare
PP_3899 -2.0 -1.6 conserved protein of unknown function, hicB family compare
PP_0258 -2.0 -2.8 regulator of murein cross-linking compare
PP_4214 -2.0 -3.4 pyoverdine biosynthesis related protein compare
PP_0356 -2.0 -3.8 malate synthase G compare
PP_1142 -2.0 -1.0 conserved protein of unknown function compare
PP_4124 -2.0 -4.3 NADH-quinone oxidoreductase subunit G compare
PP_2136 -1.9 -3.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1673 -1.9 -3.4 cobyrinate a,c-diamide synthase compare
PP_0484 -1.9 -4.0 transporter of an unknown substrate compare
PP_1346 -1.9 -2.3 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3508 -1.9 -3.0 Protein CobW compare
PP_0291 -1.9 -1.8 conserved protein of unknown function compare
PP_4099 -1.8 -16.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4943 -1.8 -1.7 putative Glycosyl transferase compare
PP_3662 -1.8 -5.0 conserved protein of unknown function compare
PP_1233 -1.8 -3.1 sulfurtransferase compare
PP_0673 -1.8 -1.9 conserved protein of unknown function compare
PP_2044 -1.8 -1.9 conserved inner membrane protein of unknown function compare
PP_4782 -1.8 -2.7 Phosphomethylpyrimidine kinase compare
PP_0147 -1.8 -5.3 Citrate transporter conserved
PP_4121 -1.8 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4296 -1.8 -1.3 conserved exported protein of unknown function compare
PP_2341 -1.8 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4482 -1.8 -2.5 Transcriptional regulator, AraC family compare
PP_4130 -1.8 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4098 -1.7 -2.0 UvrABC system protein C compare
PP_5449 -1.7 -2.6 conserved exported protein of unknown function compare
PP_0393 -1.7 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4555 -1.7 -2.2 conserved protein of unknown function compare
PP_1675 -1.7 -3.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1770 -1.7 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1293 -1.7 -1.6 molybdopterin synthase small subunit compare
PP_5310 -1.7 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_5217 -1.7 -4.9 Polyphosphate kinase compare
PP_5100 -1.7 -2.2 dITP/XTP pyrophosphatase compare
PP_4804 -1.7 -2.9 RlpA-like lipoprotein compare
PP_0152 -1.7 -0.9 conserved exported protein of unknown function compare
PP_3506 -1.7 -3.0 Magnesium chelatase, subunit ChII compare
PP_5359 -1.7 -1.4 CobW/P47K family protein compare
PP_1650 -1.6 -12.8 Sensor protein GacS compare
PP_4828 -1.6 -1.2 Precorrin-8X methylmutase compare
PP_4997 -1.6 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3810 -1.6 -1.3 conserved protein of unknown function compare
PP_0794 -1.6 -1.8 1-phosphofructokinase monomer compare
PP_2336 -1.6 -3.5 aconitate hydratase 1 compare
PP_0962 -1.6 -2.1 toluene-tolerance protein compare
PP_1109 -1.6 -6.3 Transcriptional regulator, GntR family compare
PP_0368 -1.6 -4.6 putative Acyl-CoA dehydrogenase compare
PP_1128 -1.6 -3.1 OmpA family protein compare
PP_2388 -1.6 -1.3 Transporter, LysE family compare
PP_5227 -1.6 -4.7 diaminopimelate decarboxylase compare
PP_1198 -1.6 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0905 -1.5 -1.2 conserved exported protein of unknown function compare
PP_1441 -1.5 -2.7 tRNA (cmo5U34)-methyltransferase compare
PP_4129 -1.5 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1303 -1.5 -2.6 Sulfate adenylyltransferase subunit 2 compare
PP_2031 -1.5 -2.0 conserved protein of unknown function compare
PP_3891 -1.5 -1.9 conserved protein of unknown function compare
PP_1269 -1.5 -0.9 Universal stress protein family compare
PP_0961 -1.5 -3.8 toluene tolerance protein compare
PP_1672 -1.5 -2.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4362 -1.5 -2.0 conserved protein of unknown function compare
PP_4961 -1.5 -1.2 putative Lipoprotein compare
PP_1041 -1.5 -1.7 twin arginine protein export complex subunit compare
PP_4738 -1.4 -2.8 conserved exported protein of unknown function compare
PP_2313 -1.4 -1.1 conserved membrane protein of unknown function compare
PP_0833 -1.4 -1.0 queuine tRNA-ribosyltransferase compare
PP_4126 -1.4 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4892 -1.4 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0345 -1.4 -1.9 putative Heptose kinase WapP compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3880 -1.4 -1.2 conserved exported protein of unknown function compare
PP_4701 -1.4 -0.8 glucose-6-phosphate isomerase compare
PP_1005 -1.4 -2.0 Heme oxygenase compare
PP_4261 -1.4 -2.8 cation-transporting P-type ATPase compare
PP_4870 -1.4 -2.1 Azurin compare
PP_5058 -1.4 -3.1 Carboxy-terminal-processing protease compare
PP_0725 -1.4 -2.5 conserved hypothetical TPR repeat protein compare
PP_1428 -1.4 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_2931 -1.3 -1.6 conserved protein of unknown function compare
PP_4814 -1.3 -1.2 ATP-dependent protease La domain protein compare
PP_1783 -1.3 -1.5 dTDP-glucose pyrophosphorylase compare
PP_2883 -1.3 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms