Experiment set19IT079 for Pseudomonas simiae WCS417

Compare to:

Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -4.9 -4.5 LysR family transcriptional regulator compare
PS417_22565 -4.7 -1.6 formyltetrahydrofolate deformylase compare
PS417_18310 -4.7 -2.6 hypothetical protein compare
PS417_01605 -3.5 -2.3 phosphoglycerate mutase compare
PS417_21630 -3.3 -3.8 magnesium transporter compare
PS417_20985 -2.9 -2.8 porin compare
PS417_24370 -2.9 -1.4 (2Fe-2S)-binding protein compare
PS417_02560 -2.9 -2.9 23S rRNA methyltransferase compare
PS417_08135 -2.9 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08125 -2.7 -0.9 prephenate dehydratase compare
PS417_24585 -2.7 -8.7 AMP nucleosidase compare
PS417_04650 -2.6 -1.1 D-alanine--D-alanine ligase compare
PS417_06680 -2.6 -9.0 nuclease PIN compare
PS417_27300 -2.6 -1.3 cell division protein ZapA compare
PS417_07640 -2.4 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01580 -2.2 -2.2 imidazole glycerol phosphate synthase compare
PS417_04595 -2.2 -2.9 cell division protein MraZ compare
PS417_04380 -2.2 -1.6 ABC transporter permease compare
PS417_00180 -2.0 -2.2 tryptophan synthase subunit alpha compare
PS417_21430 -2.0 -2.4 3-oxoacyl-ACP synthase compare
PS417_27135 -2.0 -1.2 glutamine synthetase compare
PS417_02975 -1.9 -5.3 3-dehydroquinate dehydratase compare
PS417_03260 -1.9 -1.8 5S ribosomal RNA compare
PS417_27800 -1.9 -2.8 exodeoxyribonuclease III compare
PS417_15480 -1.9 -2.0 ABC transporter substrate-binding protein compare
PS417_00185 -1.8 -4.4 tryptophan synthase subunit beta compare
PS417_06540 -1.8 -1.9 membrane protein compare
PS417_24500 -1.8 -4.4 DEAD/DEAH box helicase compare
PS417_17795 -1.7 -1.8 ABC transporter permease compare
PS417_04585 -1.6 -2.0 hypothetical protein compare
PS417_01855 -1.6 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_06205 -1.6 -6.9 methionine aminopeptidase compare
PS417_08540 -1.5 -2.6 RNA helicase compare
PS417_23025 -1.5 -4.9 murein transglycosylase compare
PS417_26985 -1.5 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19955 -1.5 -2.3 hypothetical protein compare
PS417_15090 -1.5 -2.9 hypothetical protein compare
PS417_01715 -1.4 -1.6 hypothetical protein compare
PS417_02555 -1.4 -8.6 exoribonuclease R compare
PS417_03380 -1.4 -1.4 hypothetical protein compare
PS417_05100 -1.4 -2.0 RNA polymerase sigma factor compare
PS417_16005 -1.3 -3.5 ATPase compare
PS417_26730 -1.3 -0.8 pyrroline-5-carboxylate reductase compare
PS417_19350 -1.3 -3.5 GTP cyclohydrolase compare
PS417_15105 -1.3 -5.7 membrane protein compare
PS417_06245 -1.3 -1.7 zinc metallopeptidase RseP compare
PS417_17945 -1.3 -1.1 hypothetical protein compare
PS417_26805 -1.3 -1.1 cell division protein FtsE compare
PS417_15095 -1.3 -3.5 hypothetical protein compare
PS417_19425 -1.3 -1.1 allantoicase compare
PS417_27870 -1.3 -1.9 ATP-dependent DNA helicase RecG compare
PS417_01620 -1.2 -2.1 preprotein translocase subunit SecB compare
PS417_10675 -1.2 -1.1 TetR family transcriptional regulator compare
PS417_07710 -1.2 -4.3 membrane protein compare
PS417_01635 -1.2 -4.7 nitrogen regulation protein NR(I) compare
PS417_12855 -1.2 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15085 -1.2 -3.6 ATPase AAA compare
PS417_00535 -1.2 -1.7 Holliday junction resolvase compare
PS417_21480 -1.2 -1.2 23S rRNA pseudouridylate synthase compare
PS417_18105 -1.2 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_16490 -1.2 -1.5 cell division protein FtsK compare
PS417_12805 -1.2 -6.2 glycogen branching protein compare
PS417_04500 -1.2 -1.3 hypothetical protein compare
PS417_02415 -1.2 -2.8 phosphoserine phosphatase compare
PS417_08025 -1.1 -1.4 acetylornithine aminotransferase compare
PS417_06370 -1.1 -1.4 cold-shock protein compare
PS417_16510 -1.1 -3.7 Clp protease ClpX compare
PS417_23770 -1.1 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_04875 -1.1 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_27585 -1.1 -1.2 diaminopimelate epimerase compare
PS417_23545 -1.1 -1.2 gamma-glutamyl kinase compare
PS417_01145 -1.1 -0.9 taurine transporter ATP-binding subunit compare
PS417_05815 -1.1 -2.8 recombinase RecA compare
PS417_18235 -1.1 -2.4 nitrile hydratase compare
PS417_09420 -1.0 -1.1 LysR family transcriptional regulator compare
PS417_02800 -1.0 -1.8 acetyltransferase compare
PS417_16000 -1.0 -1.7 chemotaxis protein CheY compare
PS417_25815 -1.0 -2.5 magnesium transporter ApaG compare
PS417_16715 -1.0 -1.5 DoxX family protein compare
PS417_25840 -1.0 -6.4 SpoVR family protein compare
PS417_08365 -1.0 -1.0 hypothetical protein compare
PS417_27425 -1.0 -3.3 exopolyphosphatase compare
PS417_23810 -1.0 -5.8 acetolactate synthase 3 catalytic subunit compare
PS417_02000 -1.0 -5.2 glutamate synthase compare
PS417_13205 -1.0 -1.8 isochorismate-pyruvate lyase compare
PS417_09915 -1.0 -1.6 hypothetical protein compare
PS417_15110 -1.0 -2.8 protein BatD compare
PS417_23390 -1.0 -3.1 ubiquinol oxidase subunit II compare
PS417_02005 -0.9 -5.5 glutamate synthase compare
PS417_27315 -0.9 -1.1 hypothetical protein compare
PS417_24560 -0.9 -1.9 ferrous iron transporter compare
PS417_01915 -0.9 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_16720 -0.9 -1.1 membrane protein compare
PS417_01290 -0.9 -1.1 ADP-ribose diphosphatase compare
PS417_06455 -0.9 -2.1 Fe(II)-dependent oxygenase compare
PS417_28280 -0.9 -1.9 hypothetical protein compare
PS417_24745 -0.9 -1.8 gamma-glutamyl phosphate reductase compare
PS417_23805 -0.9 -2.7 acetolactate synthase 3 regulatory subunit compare
PS417_11125 -0.9 -2.2 hypothetical protein compare
PS417_13580 -0.9 -2.0 AraC family transcriptional regulator compare
PS417_08155 -0.9 -1.3 integration host factor subunit beta compare
PS417_11810 -0.9 -1.6 oxidoreductase compare
PS417_12795 -0.9 -5.0 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_06735 -0.9 -1.2 3-oxoadipate enol-lactonase compare
PS417_10870 -0.9 -1.7 GABA permease compare
PS417_23375 -0.9 -1.3 cytochrome C oxidase compare
PS417_24155 -0.9 -1.3 ATP-binding protein compare
PS417_06945 -0.9 -1.0 membrane protein compare
PS417_22060 -0.9 -0.9 hypothetical protein compare
PS417_02485 -0.9 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_20715 -0.8 -1.4 cytochrome Cbb3 compare
PS417_12355 -0.8 -1.9 magnesium chelatase compare
PS417_05025 -0.8 -1.1 maleylacetoacetate isomerase compare
PS417_03875 -0.8 -2.0 membrane protein compare
PS417_15225 -0.8 -2.7 alpha/beta hydrolase compare
PS417_06825 -0.8 -1.5 hypothetical protein compare
PS417_10185 -0.8 -1.6 hypothetical protein compare
PS417_00705 -0.8 -1.3 MarR family transcriptional regulator compare
PS417_27040 -0.8 -1.3 3-phosphoglycerate dehydrogenase compare
PS417_23915 -0.8 -2.0 pantoate--beta-alanine ligase compare
PS417_02070 -0.8 -0.7 membrane protein compare
PS417_07840 -0.8 -1.9 hypothetical protein compare
PS417_28510 -0.8 -3.4 chromosome partitioning protein compare
PS417_23250 -0.8 -2.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_25135 -0.8 -1.3 hypothetical protein compare
PS417_20115 -0.8 -1.2 hypothetical protein compare
PS417_25835 -0.8 -4.5 hypothetical protein compare
PS417_26260 -0.8 -0.8 hypothetical protein compare
PS417_23015 -0.8 -1.7 NGG1p interacting factor 3 protein, NIF3 compare
PS417_28315 -0.8 -1.4 zinc ABC transporter permease compare
PS417_24460 -0.8 -0.9 hypothetical protein compare
PS417_02160 -0.8 -1.0 hypothetical protein compare
PS417_15655 -0.8 -2.4 hypothetical protein compare
PS417_24535 -0.8 -1.6 membrane protein compare
PS417_06045 -0.8 -1.9 membrane protein compare
PS417_13950 -0.8 -2.3 LuxR family transcriptional regulator compare
PS417_17125 -0.8 -2.0 transcriptional regulator compare
PS417_18600 -0.8 -2.4 isopropylmalate isomerase compare
PS417_06635 -0.8 -1.1 ferredoxin compare
PS417_01565 -0.8 -3.8 imidazole glycerol phosphate synthase compare
PS417_11415 -0.8 -1.5 hypothetical protein compare
PS417_08685 -0.7 -0.8 flagellar hook-length control protein FliK compare
PS417_06030 -0.7 -1.7 hypothetical protein compare
PS417_10405 -0.7 -0.8 filamentous hemagglutinin compare
PS417_23900 -0.7 -3.9 poly(A) polymerase compare
PS417_19190 -0.7 -2.3 BolA family transcriptional regulator compare
PS417_15100 -0.7 -1.7 BatB protein compare
PS417_01560 -0.7 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_14935 -0.7 -1.8 transposase compare
PS417_24630 -0.7 -1.3 ATP-binding protein compare
PS417_26275 -0.7 -1.4 glycine/betaine ABC transporter substrate-binding protein compare
PS417_23450 -0.7 -2.4 membrane protein compare
PS417_18395 -0.7 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_21510 -0.7 -1.4 histidine kinase compare
PS417_10860 -0.7 -0.9 flagellar basal body rod protein FlgG compare
PS417_24525 -0.7 -1.8 nuclease compare
PS417_21855 -0.7 -1.6 hypothetical protein compare
PS417_18025 -0.7 -2.1 cytochrome C compare
PS417_23380 -0.7 -1.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_05865 -0.7 -1.4 hypothetical protein compare
PS417_15665 -0.7 -1.4 hypothetical protein compare
PS417_10005 -0.7 -2.8 Pyocin large subunit-like protein compare
PS417_26145 -0.7 -1.5 hypothetical protein compare
PS417_24765 -0.7 -2.1 membrane protein compare
PS417_01340 -0.7 -3.1 agmatine deiminase compare
PS417_07560 -0.7 -1.1 universal stress protein UspA compare
PS417_00380 -0.7 -2.6 zinc ABC transporter ATP-binding protein compare
PS417_22840 -0.7 -1.1 tRNA-Met compare
PS417_10520 -0.7 -1.8 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_01210 -0.6 -3.1 hypothetical protein compare
PS417_28070 -0.6 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_17930 -0.6 -1.3 aldehyde dehydrogenase compare
PS417_13835 -0.6 -3.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
PS417_15035 -0.6 -1.0 alkylhydroperoxidase compare
PS417_17925 -0.6 -1.4 acyl-CoA dehydrogenase compare
PS417_09545 -0.6 -0.8 aldehyde-activating protein compare
PS417_00085 -0.6 -0.9 16S rRNA methyltransferase compare
PS417_08410 -0.6 -1.6 hypothetical protein compare
PS417_27515 -0.6 -1.5 heme biosynthesis protein HemY compare
PS417_22780 -0.6 -1.1 XRE family transcriptional regulator compare
PS417_00405 -0.6 -3.3 DNA polymerase I compare
PS417_19605 -0.6 -0.7 hypothetical protein compare
PS417_07950 -0.6 -1.7 MFS transporter compare
PS417_27160 -0.6 -2.2 alkanesulfonate transporter permease subunit compare
PS417_25830 -0.6 -3.3 serine/threonine protein kinase compare
PS417_24705 -0.6 -1.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_15935 -0.6 -1.4 Rrf2 family transcriptional regulator compare
PS417_05105 -0.6 -1.5 membrane protein compare
PS417_03045 -0.6 -1.1 hypothetical protein compare
PS417_16195 -0.6 -0.7 AraC family transcriptional regulator compare
PS417_04015 -0.6 -2.3 choline ABC transporter permease compare
PS417_22165 -0.6 -2.9 LysR family transcriptional regulator compare
PS417_03685 -0.6 -1.5 FAD-dependent oxidoreductase compare
PS417_05825 -0.6 -1.9 cytochrome D ubiquinol oxidase subunit II compare
PS417_06200 -0.6 -2.7 protein-PII uridylyltransferase compare
PS417_23385 -0.6 -2.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_11090 -0.6 -1.5 LacI family transcriptional regulator compare
PS417_10340 -0.6 -1.7 alcohol dehydrogenase compare
PS417_08930 -0.6 -1.1 hypothetical protein compare
PS417_18740 -0.6 -2.3 acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments