Experiment set19IT079 for Pseudomonas putida KT2440

Compare to:

Growth at pH6 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_1988 -7.1 -4.9 3-isopropylmalate dehydrogenase compare
PP_4679 -6.8 -4.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -6.6 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -6.6 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_0290 -6.6 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -6.1 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0966 -5.9 -12.8 Histidinol dehydrogenase compare
PP_4890 -5.7 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -5.7 -4.0 Acetylglutamate kinase compare
PP_0420 -5.6 -11.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4680 -5.4 -15.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3903 -5.1 -2.5 conserved protein of unknown function compare
PP_1985 -5.1 -5.5 3-isopropylmalate dehydratase large subunit compare
PP_5075 -5.1 -12.9 glutamate synthase (NADPH) beta subunit compare
PP_4678 -5.0 -14.2 Ketol-acid reductoisomerase compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -5.0 -8.3 Argininosuccinate lyase compare
PP_5185 -4.9 -7.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4696 -4.8 -4.6 Nitrogen regulation protein NR(I) compare
PP_1995 -4.7 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -4.7 -4.5 Ornithine carbamoyltransferase compare
PP_0421 -4.5 -7.1 Anthranilate phosphoribosyltransferase compare
PP_1025 -4.5 -10.7 2-isopropylmalate synthase compare
PP_2327 -4.5 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -4.3 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1654 -4.3 -2.9 cysteine synthase B compare
PP_5097 -4.2 -9.7 homoserine O-acetyltransferase compare
PP_0082 -4.2 -6.5 tryptophan synthase alpha chain compare
PP_3946 -4.2 -1.5 HTH-type transcriptional repressor NicR compare
PP_1088 -4.2 -9.5 Argininosuccinate synthase compare
PP_0422 -4.1 -4.2 Indole-3-glycerol phosphate synthase compare
PP_4909 -4.1 -7.9 phosphoserine phosphatase compare
PP_1898 -4.0 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_2001 -4.0 -7.5 O-succinylhomoserine sulfhydrylase compare
PP_0289 -4.0 -6.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -4.0 -5.7 methionine biosynthesis protein MetW compare
PP_0967 -3.9 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2328 -3.9 -7.5 Phosphoadenosine phosphosulfate reductase compare
PP_0725 -3.8 -6.2 conserved hypothetical TPR repeat protein compare
PP_0417 -3.8 -11.6 Anthranilate synthase component 1 compare
PP_5701 -3.6 -2.0 conserved protein of unknown function compare
PP_0406 -3.5 -3.8 Nucleotidyltransferase family protein compare
PP_0083 -3.5 -5.9 tryptophan synthase beta chain compare
PP_4785 -3.5 -5.1 conserved exported protein of unknown function compare
PP_1994 -3.4 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_2371 -3.4 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_3532 -3.4 -2.1 Transcriptional regulator, AsnC family compare
PP_1237 -3.3 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3245 -3.3 -2.0 conserved protein of unknown function compare
PP_5076 -3.3 -11.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_4126 -3.3 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_5128 -3.3 -5.3 Dihydroxy-acid dehydratase compare
PP_4977 -3.3 -7.9 5,10-methylenetetrahydrofolate reductase compare
PP_0291 -3.2 -2.6 conserved protein of unknown function compare
PP_4964 -3.2 -4.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1231 -3.2 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4874 -3.2 -1.6 50S ribosomal protein L9 compare
PP_1421 -3.1 -5.3 putative Sensor histidine kinase TctE conserved
PP_1420 -3.1 -5.0 Transcriptional regulatory protein tctD conserved
PP_0965 -3.1 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4828 -3.0 -1.4 Precorrin-8X methylmutase compare
PP_1418 -2.9 -5.5 putative Tricarboxylate transport protein TctC conserved
PP_4994 -2.8 -3.7 conserved protein of unknown function compare
PP_3999 -2.7 -7.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2378 -2.7 -3.3 Fe/S biogenesis protein NfuA compare
PP_5644 -2.7 -1.9 conserved membrane protein of unknown function compare
PP_1110 -2.7 -2.6 serine acetyltransferase compare
PP_4700 -2.7 -1.8 pantothenate synthetase compare
PP_0292 -2.6 -1.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3034 -2.6 -2.7 putative Regulator protein compare
PP_1864 -2.5 -1.5 conserved protein of unknown function compare
PP_2168 -2.5 -5.8 Transaldolase compare
PP_0846 -2.5 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_5095 -2.5 -1.2 pyrroline-5-carboxylate reductase compare
PP_0434 -2.5 -3.3 Anhydro-N-acetylmuramic acid kinase compare
PP_2088 -2.5 -2.2 RNA polymerase sigma factor SigX compare
PP_2336 -2.4 -4.2 aconitate hydratase 1 compare
PP_4695 -2.4 -7.4 Sensory box histidine kinase compare
PP_0787 -2.2 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4824 -2.2 -6.4 Sensor histidine kinase/response regulator compare
PP_1020 -2.2 -1.3 putative glucose-6-phosphate 1-epimerase compare
PP_5202 -2.2 -1.9 putative cell division protein compare
PP_2145 -2.2 -3.3 beta-N-acetylglucosaminidase compare
PP_1410 -2.2 -0.9 conserved protein of unknown function compare
PP_5027 -2.1 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0241 -2.1 -1.3 Transporter compare
PP_4895 -2.1 -1.4 tRNA dimethylallyltransferase compare
PP_1304 -2.1 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1001 -2.1 -3.1 arginine deiminase compare
PP_4129 -2.1 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1419 -2.0 -5.3 tricarboxylate-specific outer membrane porin conserved
PP_4832 -2.0 -2.2 Precorrin-6x reductase compare
PP_5674 -2.0 -2.3 conserved protein of unknown function compare
PP_2302 -2.0 -3.6 DNA-binding, ATP-dependent protease compare
PP_4124 -2.0 -4.3 NADH-quinone oxidoreductase subunit G compare
PP_0959 -1.9 -1.6 phospholipid ABC transporter compare
PP_1672 -1.9 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5216 -1.9 -1.2 exopolyphosphatase compare
PP_5441 -1.9 -2.4 protein of unknown function compare
PP_5661 -1.9 -2.1 putative lipoprotein compare
PP_5303 -1.9 -3.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4556 -1.8 -1.7 conserved protein of unknown function compare
PP_3662 -1.8 -3.7 conserved protein of unknown function compare
PP_5227 -1.8 -6.3 diaminopimelate decarboxylase compare
PP_5232 -1.8 -1.3 conserved protein of unknown function compare
PP_4902 -1.8 -1.7 Oligoribonuclease compare
PP_1826 -1.8 -1.6 Hydrolase, isochorismatase family compare
PP_1111 -1.8 -4.2 putative Synthetase compare
PP_3487 -1.7 -1.4 conserved exported protein of unknown function compare
PP_0775 -1.7 -1.8 conserved protein of unknown function compare
PP_2087 -1.7 -1.9 CmpX protein compare
PP_3506 -1.7 -2.9 Magnesium chelatase, subunit ChII compare
PP_0719 -1.7 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2375 -1.7 -5.5 cobalamin-dependent methionine synthase compare
PP_4693 -1.7 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_4546 -1.7 -3.7 ATP-dependent helicase HrpA compare
PP_2137 -1.7 -3.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_4268 -1.7 -1.2 nucleoid-associated broad specificity regulator compare
PP_5048 -1.7 -3.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5350 -1.7 -2.5 Transcriptional regulator, RpiR family compare
PP_5054 -1.7 -1.3 glutaredoxin 3 compare
PP_4814 -1.7 -1.6 ATP-dependent protease La domain protein compare
PP_5528 -1.7 -1.5 conserved protein of unknown function compare
PP_1528 -1.7 -0.9 conserved protein of unknown function compare
PP_4880 -1.7 -7.1 exoribonuclease R compare
PP_4099 -1.7 -15.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4480 -1.6 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_4993 -1.6 -2.9 Glutathione synthetase compare
PP_0735 -1.6 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_3098 -1.6 -1.0 conserved protein of unknown function compare
PP_1198 -1.6 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1099 -1.6 -2.0 Cold shock protein CapB compare
PP_3314 -1.6 -2.1 Heat shock protein, HSP20 family compare
PP_1912 -1.6 -3.1 Phosphate acyltransferase compare
PP_3590 -1.6 -3.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3519 -1.6 -1.0 putative Lipoprotein compare
PP_2307 -1.5 -1.0 conserved protein of unknown function compare
PP_2136 -1.5 -2.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1233 -1.5 -2.6 sulfurtransferase compare
PP_2253 -1.5 -1.8 Transcriptional regulator, GntR family compare
PP_4156 -1.5 -1.2 Transcriptional regulator, LysR family compare
PP_3198 -1.5 -1.3 Ferredoxin, 2Fe-2S compare
PP_1571 -1.5 -2.8 conserved protein of unknown function compare
PP_5248 -1.5 -1.4 putative hydrolase compare
PP_1512 -1.5 -2.0 conserved protein of unknown function compare
PP_2152 -1.5 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_2847 -1.5 -1.1 Urease accessory protein UreJ compare
PP_1656 -1.5 -5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4109 -1.5 -1.5 conserved protein of unknown function compare
PP_1109 -1.5 -6.4 Transcriptional regulator, GntR family compare
PP_5367 -1.4 -2.2 Transketolase domain protein compare
PP_1702 -1.4 -2.4 Recombination-associated protein RdgC compare
PP_2793 -1.4 -2.1 Acyl-CoA dehydrogenase family protein compare
PP_4575 -1.4 -2.0 Urea amidolyase-related protein compare
PP_1344 -1.4 -0.8 conserved protein of unknown function compare
PP_1650 -1.4 -10.9 Sensor protein GacS compare
PP_0356 -1.4 -4.1 malate synthase G compare
PP_0841 -1.4 -2.3 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_5310 -1.4 -3.3 junction-specific ATP-dependent DNA helicase compare
PP_4254 -1.4 -1.0 conserved protein of unknown function compare
PP_5167 -1.4 -1.3 conserved hypothetical protein compare
PP_0960 -1.4 -2.1 phospholipid ABC transporter binding protein compare
PP_2900 -1.4 -1.8 conserved protein of unknown function compare
PP_2324 -1.4 -2.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1655 -1.4 -2.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1508 -1.3 -2.1 conserved protein of unknown function compare
PP_1664 -1.3 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_5483 -1.3 -1.5 conserved protein of unknown function compare
PP_1441 -1.3 -2.5 tRNA (cmo5U34)-methyltransferase compare
PP_0345 -1.3 -2.4 putative Heptose kinase WapP compare
PP_0048 -1.3 -1.0 conserved protein of unknown function compare
PP_5217 -1.3 -4.3 Polyphosphate kinase compare
PP_0147 -1.3 -5.0 Citrate transporter conserved
PP_5015 -1.3 -2.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5104 -1.3 -3.0 thiazole synthase compare
PP_0236 -1.3 -1.3 NAD(P)H-dependent FMN reductase subunit compare
PP_5571 -1.3 -1.1 conserved protein of unknown function compare
PP_2899 -1.3 -1.3 conserved exported protein of unknown function compare
PP_4131 -1.3 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_5724 -1.3 -2.8 conserved protein of unknown function compare
PP_4517 -1.2 -0.9 conserved protein of unknown function compare
PP_4917 -1.2 -1.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1733 -1.2 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_2044 -1.2 -0.9 conserved inner membrane protein of unknown function compare
PP_4861 -1.2 -4.3 conserved protein of unknown function compare
PP_3899 -1.2 -1.4 conserved protein of unknown function, hicB family compare
PP_1238 -1.2 -3.4 putative Lipoprotein compare
PP_3603 -1.2 -3.1 Transcriptional regulator, GntR family compare
PP_1783 -1.2 -1.7 dTDP-glucose pyrophosphorylase compare
PP_0855 -1.1 -1.7 conserved protein of unknown function compare
PP_1217 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4560 -1.1 -2.9 putative Ribonuclease BN compare
PP_4122 -1.1 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4204 -1.1 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3637 -1.1 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0122 -1.1 -1.1 conserved exported protein of unknown function compare
PP_3035 -1.1 -1.0 conserved protein of unknown function compare
PP_3770 -1.1 -1.9 conserved protein of unknown function compare
PP_4961 -1.1 -1.0 putative Lipoprotein compare


Specific Phenotypes

For 4 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms