Experiment set19IT079 for Pseudomonas putida KT2440

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Growth at pH6 and carbon source Trisodium citrate dihydrate

200 most detrimental genes:

  gene name fitness t score description  
PP_3484 +1.9 8.0 Response regulator receiver protein compare
PP_2737 +1.8 2.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1824 +1.7 3.0 Smr domain protein compare
PP_5338 +1.7 4.5 aspartate ammonia-lyase compare
PP_2144 +1.6 3.4 Transcriptional regulator, TetR family compare
PP_1575 +1.6 3.8 conserved protein of unknown function compare
PP_4136 +1.5 0.8 Transcriptional regulator, LuxR family compare
PP_1186 +1.5 3.0 two component system DNA-binding transcriptional dual regulator compare
PP_1623 +1.4 6.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_5748 +1.4 1.3 cytochrome c heme lyase subunit compare
PP_1568 +1.3 1.9 conserved protein of unknown function compare
PP_1548 +1.2 1.8 conserved protein of unknown function compare
PP_3916 +1.2 1.7 conserved protein of unknown function compare
PP_0833 +1.2 2.0 queuine tRNA-ribosyltransferase compare
PP_3392 +1.1 1.8 conserved protein of unknown function compare
PP_5328 +1.1 1.3 putative phosphate transport system permease protein compare
PP_5329 +1.1 2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0905 +1.1 1.9 conserved exported protein of unknown function compare
PP_0685 +1.0 2.6 conserved protein of unknown function compare
PP_2765 +1.0 0.9 putative Sulfonate monooxygenase MsuD compare
PP_1164 +1.0 1.9 Transcriptional regulator, LysR family compare
PP_1556 +1.0 3.5 conserved protein of unknown function compare
PP_1362 +1.0 2.0 pyruvate kinase II compare
PP_2121 +1.0 2.1 putative Lipoprotein compare
PP_4941 +1.0 4.3 conserved exported protein of unknown function compare
PP_5583 +1.0 1.8 conserved protein of unknown function compare
PP_5051 +1.0 2.4 conserved protein of unknown function compare
PP_2306 +1.0 2.2 conserved exported protein of unknown function compare
PP_5456 +0.9 1.6 conserved protein of unknown function compare
PP_0512 +0.9 1.5 hypothetical protein compare
PP_2976 +0.9 1.3 putative transposase compare
PP_3312 +0.9 1.7 putative Heat shock protein compare
PP_3447 +0.9 1.0 conserved membrane protein of unknown function compare
PP_5423 +0.9 2.0 conserved membrane protein of unknown function compare
PP_4343 +0.9 2.6 Flagellar biosynthesis protein FlhF compare
PP_4697 +0.9 1.5 poly(A) polymerase compare
PP_3591 +0.9 2.5 Delta 1-piperideine-2-carboxylate reductase compare
PP_3481 +0.9 1.5 conserved exported protein of unknown function compare
PP_4953 +0.9 2.8 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_0804 +0.9 4.6 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3328 +0.9 2.0 putative Ring-cleaving dioxygenase compare
PP_0191 +0.9 2.8 Transcriptional regulatory protein AlgQ compare
PP_3551 +0.9 1.1 DNA-binding response regulator, LuxR family compare
PP_4386 +0.9 2.2 flagellar basal-body rod protein FlgF compare
PP_1269 +0.8 1.0 Universal stress protein family compare
PP_2309 +0.8 1.1 conserved protein of unknown function compare
PP_3359 +0.8 2.5 putative Hydroxycinnamic acid degradation regulator compare
PP_3647 +0.8 2.6 putative Oxidoreductase compare
PP_2345 +0.8 2.8 conserved exported protein of unknown function compare
PP_1906 +0.8 1.9 ribosomal large subunit pseudouridine synthase C compare
PP_2379 +0.8 2.8 putative cytochrome oxidase biogenesis protein compare
PP_3353 +0.8 2.4 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_2804 +0.8 3.0 Hydrolase, alpha/beta fold family compare
PP_0137 +0.8 3.7 glutamate/aspartate-proton DAACS transporter compare
PP_1862 +0.8 2.2 conserved membrane protein of unknown function compare
PP_2107 +0.8 1.0 conserved protein of unknown function compare
PP_2883 +0.8 0.9 conserved protein of unknown function compare
PP_0411 +0.8 2.8 Polyamine ABC transporter, ATP-binding protein compare
PP_5500 +0.8 2.2 protein of unknown function compare
PP_4057 +0.8 3.4 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_4559 +0.8 2.7 peptide deformylase compare
PP_4396 +0.8 2.3 conserved protein of unknown function compare
PP_1999 +0.8 1.0 membrane protein required for colicin V production compare
PP_2013 +0.8 2.4 conserved protein of unknown function compare
PP_2227 +0.8 2.6 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_2210 +0.8 2.2 LysR family transcriptional regulator compare
PP_5093 +0.8 1.2 twitching motility protein compare
PP_3315 +0.8 2.5 conserved membrane protein of unknown function compare
PP_4499 +0.8 1.7 putative maturation enzyme compare
PP_0643 +0.8 1.4 protein of unknown function compare
PP_4528 +0.8 0.9 conserved protein of unknown function compare
PP_4997 +0.7 1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0319 +0.7 1.3 conserved protein of unknown function compare
PP_0001 +0.7 1.2 probable chromosome-partitioning protein compare
PP_5107 +0.7 1.4 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_2668 +0.7 1.5 ABC efflux transporter, ATP-binding protein compare
PP_4367 +0.7 1.7 Flagellar assembly protein FliH compare
PP_5198 +0.7 1.8 conserved protein of unknown function compare
PP_0711 +0.7 0.9 putative hydrolase compare
PP_0805 +0.7 4.1 Outer membrane efflux protein compare
PP_4094 +0.7 0.8 conserved protein of unknown function compare
PP_4837 +0.7 1.4 conserved protein of unknown function compare
PP_0377 +0.7 1.4 coenzyme PQQ synthesis protein D compare
PP_0035 +0.7 2.2 putative bactoprenol-linked glycose transferase compare
PP_5168 +0.7 2.2 sulfate/thiosulfate import ATP-binding protein compare
PP_1513 +0.7 2.0 Ribosomal RNA small subunit methyltransferase J compare
PP_4391 +0.7 2.7 flagellar basal-body rod protein FlgB compare
PP_1038 +0.7 1.2 conserved protein of unknown function compare
PP_3989 +0.7 2.0 DNA-cytosine methyltransferase compare
PP_0921 +0.7 1.8 Transcriptional regulator, ArsR family compare
PP_5157 +0.7 2.8 conserved exported protein of unknown function compare
PP_3408 +0.7 1.0 cobalt transporter subunit A compare
PP_2026 +0.7 3.5 conserved protein of unknown function compare
PP_5274 +0.7 1.6 conserved protein of unknown function compare
PP_0141 +0.7 1.6 putative ABC transporter, ATP-binding protein compare
PP_4180 +0.7 1.6 conserved protein of unknown function compare
PP_0872 +0.7 2.4 Peptide chain release factor 3 compare
PP_3597 +0.7 1.9 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_5337 +0.7 1.8 LysR family transcriptional regulator compare
PP_4261 +0.7 1.9 cation-transporting P-type ATPase compare
PP_3201 +0.7 1.8 BNR domain protein compare
PP_2520 +0.7 2.2 conserved protein of unknown function compare
PP_1468 +0.7 1.4 Tyrosine recombinase XerD compare
PP_5241 +0.7 0.6 DNA-binding response regulator, LuxR family compare
PP_5253 +0.7 1.6 Arylesterase compare
PP_2456 +0.7 2.4 D-ribose ABC transporter - permease subunit compare
PP_4669 +0.7 2.3 OmpA family protein compare
PP_4341 +0.7 3.8 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5445 +0.7 1.1 conserved protein of unknown function compare
PP_0022 +0.7 0.8 hypothetical protein compare
PP_2972 +0.7 1.3 conserved protein of unknown function compare
PP_4855 +0.7 2.3 Osmotically-inducible lipoprotein OsmE compare
PP_5717 +0.7 1.0 conserved protein of unknown function compare
PP_3380 +0.7 1.0 2-ketogluconate utilization repressor compare
PP_2889 +0.7 2.4 putative Transmembrane regulator PrtR compare
PP_3404 +0.7 1.9 conserved protein of unknown function compare
PP_5709 +0.7 2.9 protein of unknown function compare
PP_5475 +0.7 0.8 conserved protein of unknown function compare
PP_0632 +0.7 2.4 leader peptidase/N-methyltransferase compare
PP_4406 +0.7 1.3 conserved protein of unknown function compare
PP_1907 +0.7 2.4 Hydrolase, haloacid dehalogenase-like family compare
PP_4470 +0.7 1.1 putative transcriptional regulator (Arc domain-containing) compare
PP_3866 +0.6 1.7 conserved protein of unknown function compare
PP_5597 +0.6 0.9 conserved protein of unknown function compare
PP_1930 +0.6 1.5 arsenic resistance transcriptional regulator compare
PP_1454 +0.6 1.9 conserved protein of unknown function compare
PP_1855 +0.6 2.6 conserved exported protein of unknown function compare
PP_5556 +0.6 1.3 putative bacteriophage lysis protein compare
PP_0574 +0.6 4.0 DNA-binding response regulator, LuxR family compare
PP_0633 +0.6 1.5 Type 4 fimbrial assembly protein PilC compare
PP_2062 +0.6 2.7 conserved protein of unknown function compare
PP_0806 +0.6 5.4 putative Surface adhesion protein compare
PP_3933 +0.6 2.6 conserved membrane protein of unknown function compare
PP_4726 +0.6 1.2 Chaperone protein DnaJ compare
PP_1503 +0.6 1.7 conserved protein of unknown function compare
PP_4223 +0.6 0.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5572 +0.6 1.2 protein of unknown function compare
PP_1478 +0.6 1.8 putative Xenobiotic reductase compare
PP_5480 +0.6 2.3 conserved exported protein of unknown function compare
PP_1066 +0.6 2.0 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_2439 +0.6 1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_5103 +0.6 2.0 tRNA (guanine-N(7)-)-methyltransferase compare
PP_4032 +0.6 2.4 putative Outer membrane lipoprotein Blc compare
PP_1368 +0.6 1.6 putative membrane protein containing a glycosyltransferase domain compare
PP_0916 +0.6 1.5 Amino acid transporter LysE compare
PP_4069 +0.6 2.5 conserved protein of unknown function compare
PP_5084 +0.6 3.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1206 +0.6 2.8 basic-amino-acid specific porin OprD compare
PP_5520 +0.6 1.6 conserved protein of unknown function compare
PP_5187 +0.6 1.6 putative thiamine triphosphatase compare
PP_4316 +0.6 1.9 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1271 +0.6 2.0 putative Multidrug efflux MFS transporter compare
PP_1087 +0.6 2.7 Outer membrane protein, OmpA family compare
PP_2903 +0.6 1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3199 +0.6 2.5 putative Monooxygenase compare
PP_2041 +0.6 1.9 Transcriptional regulator, LysR family compare
PP_2648 +0.6 1.6 Universal stress protein family compare
PP_2434 +0.6 2.5 conserved protein of unknown function compare
PP_0900 +0.6 1.1 PAP2 family protein compare
PP_5428 +0.6 1.1 conserved exported protein of unknown function compare
PP_0274 +0.6 0.9 putative transcriptional regulator containing HTH domain compare
PP_5331 +0.6 0.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4945 +0.6 2.0 23S rRNA m(6)A2030 methyltransferase compare
PP_0235 +0.6 1.1 Peroxidase compare
PP_5114 +0.6 0.9 putative adenine methyltransferase compare
PP_2438 +0.6 2.2 putative alcaline-induced transporter compare
PP_4985 +0.6 1.9 16S rRNA m3U1498 methyltransferase compare
PP_2459 +0.6 1.2 ribose pyranase compare
PP_0653 +0.6 0.8 conserved protein of unknown function compare
PP_4916 +0.6 1.9 putative esterase compare
PP_0946 +0.6 2.3 superoxide dismutase (Mn) compare
PP_1573 +0.6 2.2 putative Major tail protein compare
PP_2061 +0.6 1.7 conserved protein of unknown function compare
PP_3541 +0.6 1.0 Transporter, MgtC family compare
PP_4379 +0.6 1.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2330 +0.6 1.4 conserved protein of unknown function compare
PP_1456 +0.6 1.6 conserved membrane protein of unknown function compare
PP_2409 +0.6 1.0 cobalt-zinc-cadmium resistance protein compare
PP_2723 +0.6 1.7 Uncharacterized oxidoreductase YhdF compare
PP_2027 +0.6 2.5 conserved exported protein of unknown function compare
PP_1970 +0.6 2.3 putative Lipoprotein compare
PP_4943 +0.6 0.6 putative Glycosyl transferase compare
PP_1428 +0.6 0.5 Sigma factor AlgU negative regulatory protein compare
PP_5476 +0.6 1.5 conserved protein of unknown function compare
PP_2759 +0.6 1.4 ribose ABC transporter - ATP-binding subunit compare
PP_0425 +0.6 1.1 conserved protein of unknown function compare
PP_5175 +0.6 2.8 HlyD family secretion protein compare
PP_0117 +0.5 2.1 Zn(2+) ABC transporter - permease subunit compare
PP_0428 +0.5 2.1 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_2581 +0.5 0.8 conserved protein of unknown function compare
PP_5477 +0.5 1.4 conserved protein of unknown function compare
PP_5333 +0.5 2.3 conserved exported protein of unknown function compare
PP_3876 +0.5 1.0 conserved protein of unknown function compare
PP_0355 +0.5 1.5 Response regulator compare
PP_4488 +0.5 1.7 conserved exported protein of unknown function compare
PP_2738 +0.5 1.4 putative Transcriptional regulator compare
PP_5353 +0.5 1.7 conserved exported protein of unknown function compare
PP_5589 +0.5 1.3 protein of unknown function containing Rhs repeat-associated core domain compare
PP_2214 +0.5 1.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3928 +0.5 1.9 conserved exported protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms