Experiment set19IT078 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19745 -11.5 -4.8 flagellar assembly protein FliO compare
PS417_21570 -11.3 -4.9 flagellar basal body rod protein FlgB compare
PS417_19765 -10.1 -6.8 flagellar hook-length control protein compare
PS417_19740 -9.3 -5.7 flagellar biosynthesis protein flip compare
PS417_01575 -9.3 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19730 -9.3 -3.6 flagellar biosynthesis protein FliR compare
PS417_19880 -9.3 -6.4 flagellar basal body L-ring protein compare
PS417_21595 -9.1 -3.8 flagellar biosynthesis protein FlgN compare
PS417_19725 -8.8 -4.9 flagellar biosynthesis protein FlhB compare
PS417_19795 -8.7 -7.9 flagellar assembly protein FliH compare
PS417_18595 -8.4 -3.6 3-isopropylmalate dehydratase compare
PS417_18600 -8.2 -3.1 isopropylmalate isomerase compare
PS417_21575 -8.1 -5.1 chemotaxis protein compare
PS417_19710 -8.1 -15.6 flagellar biosynthesis protein FlhA compare
PS417_04415 -8.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27835 -8.0 -7.3 endoribonuclease compare
PS417_21565 -7.6 -4.9 flagellar basal body rod protein FlgC compare
PS417_28220 -7.4 -2.8 LysR family transcriptional regulator compare
PS417_17565 -7.4 -2.8 branched-chain amino acid aminotransferase compare
PS417_19755 -7.3 -1.6 flagellar motor switch protein FliM compare
PS417_19865 -7.2 -10.3 flagellar hook protein FlgK compare
PS417_19860 -7.2 -19.3 flagellar hook protein FlgL compare
PS417_19825 -7.1 -8.8 ATPase AAA compare
PS417_26740 -7.1 -6.5 homoserine acetyltransferase compare
PS417_19790 -7.0 -3.8 ATP synthase compare
PS417_19665 -7.0 -3.8 flagellar motor protein MotD compare
PS417_02510 -6.9 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19735 -6.9 -4.5 flagellar biosynthesis protein FliQ compare
PS417_19650 -6.9 -3.9 chemotaxis protein CheW compare
PS417_21585 -6.8 -8.0 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19705 -6.8 -2.9 flagellar biosynthesis regulator FlhF compare
PS417_19655 -6.7 -3.5 chemotaxis protein CheW compare
PS417_19785 -6.7 -3.8 flagellar biogenesis protein compare
PS417_19800 -6.6 -2.1 flagellar motor switch protein FliG compare
PS417_19695 -6.4 -5.9 flagellar biosynthesis sigma factor compare
PS417_18560 -6.3 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00185 -6.2 -3.6 tryptophan synthase subunit beta compare
PS417_19675 -6.2 -5.4 chemotaxis protein CheY compare
PS417_19840 -6.1 -10.3 flagellar cap protein FliD compare
PS417_25725 -6.1 -14.8 anthranilate synthase component I compare
PS417_19885 -6.1 -1.8 flagellar basal body rod protein FlgG compare
PS417_25720 -6.1 -6.4 anthranilate synthase component II compare
PS417_18585 -6.0 -5.4 3-isopropylmalate dehydrogenase compare
PS417_18530 -5.9 -5.9 O-succinylhomoserine sulfhydrylase compare
PS417_23800 -5.9 -10.8 ketol-acid reductoisomerase compare
PS417_23545 -5.8 -2.5 gamma-glutamyl kinase compare
PS417_08540 -5.7 -1.8 RNA helicase compare
PS417_05635 -5.6 -5.5 membrane protein compare
PS417_04420 -5.6 -9.5 histidinol dehydrogenase compare
PS417_21555 -5.6 -8.9 flagellar hook protein FlgE compare
PS417_19660 -5.5 -4.7 cobalamin biosynthesis protein CobQ compare
PS417_19805 -5.5 -3.4 flagellar M-ring protein FliF compare
PS417_01855 -5.5 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_21390 -5.4 -5.1 hypothetical protein compare
PS417_01635 -5.3 -5.3 nitrogen regulation protein NR(I) compare
PS417_22210 -5.3 -2.6 AraC family transcriptional regulator compare
PS417_01560 -5.2 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_27040 -5.2 -2.8 3-phosphoglycerate dehydrogenase compare
PS417_19850 -5.1 -7.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08245 -5.0 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_20635 -5.0 -1.1 ABC transporter ATP-binding protein compare
PS417_01850 -4.9 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22565 -4.8 -1.1 formyltetrahydrofolate deformylase compare
PS417_26745 -4.8 -5.0 methionine biosynthesis protein MetW compare
PS417_24745 -4.7 -2.2 gamma-glutamyl phosphate reductase compare
PS417_23810 -4.7 -8.4 acetolactate synthase 3 catalytic subunit compare
PS417_19835 -4.6 -1.4 flagellar biosynthesis protein FliS compare
PS417_05975 -4.6 -1.0 chemotaxis protein CheW compare
PS417_01640 -4.5 -5.6 histidine kinase compare
PS417_27135 -4.5 -1.0 glutamine synthetase compare
PS417_08220 -4.4 -1.0 epimerase compare
PS417_01955 -4.4 -9.4 peptidase compare
PS417_05595 -4.4 -8.7 ornithine carbamoyltransferase compare
PS417_27300 -4.4 -1.0 cell division protein ZapA compare
PS417_03165 -4.4 -3.2 hypothetical protein compare
PS417_20105 -4.3 -18.3 glycosyl transferase compare
PS417_27795 -4.3 -1.0 orotate phosphoribosyltransferase compare
PS417_02415 -4.3 -5.8 phosphoserine phosphatase compare
PS417_23950 -4.3 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_25710 -4.3 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_21125 -4.2 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_16490 -4.2 -1.3 cell division protein FtsK compare
PS417_23995 -4.2 -0.9 preprotein translocase subunit SecG compare
PS417_17560 -4.2 -3.4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_25715 -4.1 -4.4 anthranilate phosphoribosyltransferase compare
PS417_09085 -4.1 -1.3 hypothetical protein compare
PS417_01915 -4.0 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06200 -3.9 -5.7 protein-PII uridylyltransferase compare
PS417_01580 -3.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_18540 -3.7 -3.7 colicin V production CvpA compare
PS417_21070 -3.6 -2.9 aconitate hydratase compare
PS417_27195 -3.6 -1.1 N-acetylglutamate synthase compare
PS417_05365 -3.5 -2.1 FAD-binding protein compare
PS417_26890 -3.3 -5.0 dihydroxy-acid dehydratase compare
PS417_27870 -3.3 -3.9 ATP-dependent DNA helicase RecG compare
PS417_01565 -3.3 -1.7 imidazole glycerol phosphate synthase compare
PS417_19870 -3.3 -4.6 flagellar rod assembly protein FlgJ compare
PS417_17550 -3.2 -3.8 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_24710 -3.2 -5.7 lipoprotein compare
PS417_02210 -3.2 -3.9 diguanylate cyclase compare
PS417_12855 -3.2 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18690 -3.2 -3.9 aromatic amino acid aminotransferase compare
PS417_19620 -3.1 -2.2 hypothetical protein compare
PS417_17240 -3.1 -2.8 trigger factor compare
PS417_02485 -3.1 -4.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_26900 -3.1 -1.8 L-cystine transporter tcyP compare
PS417_21630 -3.0 -2.4 magnesium transporter compare
PS417_08580 -2.9 -6.1 histidine kinase compare
PS417_00180 -2.9 -2.2 tryptophan synthase subunit alpha compare
PS417_19830 -2.9 -1.9 flagellar assembly protein FliT compare
PS417_23805 -2.9 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_08090 -2.8 -0.8 3-oxoacyl-ACP reductase compare
PS417_20985 -2.8 -2.0 porin compare
PS417_15935 -2.8 -2.3 Rrf2 family transcriptional regulator compare
PS417_20650 -2.8 -8.4 hypothetical protein compare
PS417_06540 -2.8 -1.7 membrane protein compare
PS417_22520 -2.8 -1.6 histidine kinase compare
PS417_02225 -2.7 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08125 -2.7 -0.6 prephenate dehydratase compare
PS417_23770 -2.7 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_09725 -2.7 -6.8 transporter compare
PS417_02560 -2.7 -2.0 23S rRNA methyltransferase compare
PS417_04650 -2.7 -0.8 D-alanine--D-alanine ligase compare
PS417_19820 -2.6 -3.8 histidine kinase compare
PS417_26730 -2.6 -0.8 pyrroline-5-carboxylate reductase compare
PS417_20095 -2.6 -7.7 hypothetical protein compare
PS417_02950 -2.6 -2.8 tRNA-dihydrouridine synthase B compare
PS417_00705 -2.6 -1.5 MarR family transcriptional regulator compare
PS417_02280 -2.6 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_03100 -2.5 -1.1 pilus assembly protein compare
PS417_21065 -2.5 -1.8 3-methylitaconate isomerase compare
PS417_23025 -2.5 -6.4 murein transglycosylase compare
PS417_08190 -2.5 -9.9 membrane protein compare
PS417_02000 -2.5 -9.3 glutamate synthase compare
PS417_20090 -2.5 -6.5 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_19690 -2.5 -2.0 histidine kinase compare
PS417_12290 -2.5 -7.7 sulfite reductase compare
PS417_20610 -2.4 -1.5 hypothetical protein compare
PS417_02435 -2.4 -5.2 flagellar motor protein MotA compare
PS417_04380 -2.4 -1.1 ABC transporter permease compare
PS417_06680 -2.4 -7.8 nuclease PIN compare
PS417_18570 -2.4 -4.0 peptidoglycan-binding protein compare
PS417_17545 -2.3 -2.8 2-oxoisovalerate dehydrogenase compare
PS417_20160 -2.3 -2.2 cysteine synthase compare
PS417_22445 -2.3 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_27210 -2.3 -3.6 AsnC family transcriptional regulator compare
PS417_12355 -2.3 -1.8 magnesium chelatase compare
PS417_06375 -2.2 -0.7 deoxycytidine triphosphate deaminase compare
PS417_21430 -2.2 -1.8 3-oxoacyl-ACP synthase compare
PS417_00755 -2.2 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_23110 -2.2 -3.3 2-isopropylmalate synthase compare
PS417_27865 -2.2 -1.9 LysR family transcriptional regulator compare
PS417_14940 -2.2 -1.5 LysR family transcriptional regulator compare
PS417_14065 -2.1 -6.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_15770 -2.1 -1.2 pyridoxine 5'-phosphate oxidase compare
PS417_16465 -2.1 -5.7 sirohydrochlorin ferrochelatase compare
PS417_19645 -2.1 -2.5 chemotaxis protein compare
PS417_21480 -2.1 -1.3 23S rRNA pseudouridylate synthase compare
PS417_00175 -2.1 -1.0 CigR compare
PS417_16510 -2.0 -2.7 Clp protease ClpX compare
PS417_08230 -2.0 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26060 -2.0 -2.1 DNA polymerase III subunit epsilon compare
PS417_02005 -2.0 -8.1 glutamate synthase compare
PS417_23380 -1.9 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_08185 -1.9 -3.0 glycosyl transferase compare
PS417_18590 -1.9 -3.0 SAM-dependent methyltransferase compare
PS417_17160 -1.9 -2.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_22815 -1.9 -6.6 permease compare
PS417_00370 -1.9 -0.9 hypothetical protein compare
PS417_26510 -1.9 -5.2 5,10-methylenetetrahydrofolate reductase compare
PS417_02440 -1.8 -3.1 flagellar motor protein MotB compare
PS417_27010 -1.8 -6.0 threonine dehydratase compare
PS417_26995 -1.8 -4.8 phosphoserine phosphatase compare
PS417_09245 -1.8 -1.0 recombinase RdgC compare
PS417_11795 -1.7 -3.3 FAD-dependent oxidoreductase compare
PS417_05815 -1.7 -3.5 recombinase RecA compare
PS417_05165 -1.7 -2.2 cytosol aminopeptidase compare
PS417_12665 -1.7 -5.0 hypothetical protein compare
PS417_13835 -1.6 -5.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
PS417_22450 -1.6 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_11770 -1.6 -1.5 pyruvate dehydrogenase compare
PS417_25815 -1.6 -2.0 magnesium transporter ApaG compare
PS417_13840 -1.6 -2.8 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_04725 -1.6 -3.6 chemotaxis protein CheW compare
PS417_21560 -1.6 -1.4 flagellar basal body rod modification protein FlgD compare
PS417_00075 -1.6 -1.5 hypothetical protein compare
PS417_03830 -1.6 -6.3 protein disaggregation chaperone compare
PS417_06145 -1.6 -0.8 hypothetical protein compare
PS417_19630 -1.6 -2.0 LuxR family transcriptional regulator compare
PS417_27305 -1.5 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_07190 -1.5 -3.4 MFS transporter compare
PS417_18055 -1.5 -1.2 general secretion pathway protein GspK compare
PS417_08025 -1.5 -1.3 acetylornithine aminotransferase compare
PS417_27615 -1.5 -5.5 ammonia channel protein compare
PS417_23485 -1.5 -2.8 antibiotic biosynthesis monooxygenase compare
PS417_15820 -1.5 -1.1 universal stress protein UspA compare
PS417_01645 -1.5 -1.7 cupin compare
PS417_06895 -1.5 -1.7 DNA-binding protein compare
PS417_02745 -1.4 -1.5 FMN-dependent NADH-azoreductase compare
PS417_26235 -1.4 -4.5 (Fe-S)-binding protein compare


Specific Phenotypes

For 7 genes in this experiment