Experiment set19IT077 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_23995 -4.3 -1.3 preprotein translocase subunit SecG compare
PS417_01560 -3.8 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_20855 -3.8 -1.6 hypothetical protein compare
PS417_01605 -3.6 -2.2 phosphoglycerate mutase compare
PS417_00180 -3.5 -3.1 tryptophan synthase subunit alpha compare
PS417_20985 -3.2 -3.1 porin compare
PS417_22565 -3.1 -1.3 formyltetrahydrofolate deformylase compare
PS417_27040 -3.0 -3.6 3-phosphoglycerate dehydrogenase compare
PS417_23545 -3.0 -3.0 gamma-glutamyl kinase compare
PS417_21480 -3.0 -2.2 23S rRNA pseudouridylate synthase compare
PS417_21630 -3.0 -3.5 magnesium transporter compare
PS417_23025 -3.0 -7.5 murein transglycosylase compare
PS417_08125 -2.9 -0.9 prephenate dehydratase compare
PS417_03260 -2.8 -1.6 5S ribosomal RNA compare
PS417_27795 -2.7 -1.2 orotate phosphoribosyltransferase compare
PS417_23810 -2.6 -11.8 acetolactate synthase 3 catalytic subunit compare
PS417_23770 -2.5 -2.4 exodeoxyribonuclease V subunit alpha compare
PS417_01855 -2.5 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_08155 -2.4 -1.9 integration host factor subunit beta compare
PS417_19835 -2.4 -2.3 flagellar biosynthesis protein FliS compare
PS417_01915 -2.4 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23950 -2.3 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_22450 -2.3 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_27800 -2.3 -3.5 exodeoxyribonuclease III compare
PS417_19790 -2.3 -4.0 ATP synthase compare
PS417_25710 -2.2 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_21595 -2.2 -6.5 flagellar biosynthesis protein FlgN compare
PS417_19785 -2.2 -5.8 flagellar biogenesis protein compare
PS417_09085 -2.1 -1.6 hypothetical protein compare
PS417_21575 -2.1 -6.6 chemotaxis protein compare
PS417_27135 -2.1 -1.1 glutamine synthetase compare
PS417_00345 -2.1 -2.5 copper-binding protein compare
PS417_04420 -2.1 -8.8 histidinol dehydrogenase compare
PS417_00065 -2.0 -1.8 3-methyladenine DNA glycosylase compare
PS417_19885 -2.0 -4.5 flagellar basal body rod protein FlgG compare
PS417_00185 -2.0 -3.8 tryptophan synthase subunit beta compare
PS417_23805 -2.0 -5.3 acetolactate synthase 3 regulatory subunit compare
PS417_19865 -1.9 -10.7 flagellar hook protein FlgK compare
PS417_18595 -1.9 -2.6 3-isopropylmalate dehydratase compare
PS417_19850 -1.9 -6.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_24745 -1.9 -3.7 gamma-glutamyl phosphate reductase compare
PS417_19840 -1.8 -8.8 flagellar cap protein FliD compare
PS417_01580 -1.8 -1.9 imidazole glycerol phosphate synthase compare
PS417_08135 -1.8 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19675 -1.8 -4.0 chemotaxis protein CheY compare
PS417_06680 -1.7 -7.0 nuclease PIN compare
PS417_08245 -1.7 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23375 -1.7 -1.8 cytochrome C oxidase compare
PS417_02415 -1.7 -2.9 phosphoserine phosphatase compare
PS417_19860 -1.7 -10.9 flagellar hook protein FlgL compare
PS417_19765 -1.7 -9.0 flagellar hook-length control protein compare
PS417_19795 -1.7 -9.8 flagellar assembly protein FliH compare
PS417_21585 -1.7 -7.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19735 -1.7 -3.8 flagellar biosynthesis protein FliQ compare
PS417_21555 -1.7 -9.6 flagellar hook protein FlgE compare
PS417_21565 -1.7 -4.9 flagellar basal body rod protein FlgC compare
PS417_21570 -1.6 -5.4 flagellar basal body rod protein FlgB compare
PS417_19725 -1.6 -6.1 flagellar biosynthesis protein FlhB compare
PS417_16510 -1.6 -3.3 Clp protease ClpX compare
PS417_19880 -1.6 -7.1 flagellar basal body L-ring protein compare
PS417_18585 -1.6 -5.7 3-isopropylmalate dehydrogenase compare
PS417_07640 -1.6 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18560 -1.6 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00045 -1.6 -2.2 glycerol acyltransferase compare
PS417_01575 -1.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_05635 -1.6 -5.1 membrane protein compare
PS417_01095 -1.6 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_06540 -1.6 -1.3 membrane protein compare
PS417_27865 -1.6 -2.2 LysR family transcriptional regulator compare
PS417_15285 -1.5 -1.2 type VI secretion protein compare
PS417_19690 -1.5 -6.0 histidine kinase compare
PS417_26730 -1.5 -0.8 pyrroline-5-carboxylate reductase compare
PS417_19740 -1.5 -8.7 flagellar biosynthesis protein flip compare
PS417_20610 -1.5 -1.5 hypothetical protein compare
PS417_19805 -1.5 -5.1 flagellar M-ring protein FliF compare
PS417_23380 -1.5 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_27300 -1.5 -0.9 cell division protein ZapA compare
PS417_01635 -1.5 -5.8 nitrogen regulation protein NR(I) compare
PS417_04650 -1.5 -0.6 D-alanine--D-alanine ligase compare
PS417_13800 -1.4 -3.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_15095 -1.4 -3.5 hypothetical protein compare
PS417_04595 -1.4 -2.3 cell division protein MraZ compare
PS417_14940 -1.4 -1.8 LysR family transcriptional regulator compare
PS417_19695 -1.4 -5.7 flagellar biosynthesis sigma factor compare
PS417_19710 -1.4 -8.7 flagellar biosynthesis protein FlhA compare
PS417_19825 -1.4 -8.8 ATPase AAA compare
PS417_04415 -1.4 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -1.4 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02000 -1.4 -7.0 glutamate synthase compare
PS417_18530 -1.4 -3.1 O-succinylhomoserine sulfhydrylase compare
PS417_22630 -1.4 -1.5 hypothetical protein compare
PS417_23800 -1.4 -5.9 ketol-acid reductoisomerase compare
PS417_18265 -1.4 -3.0 AsnC family transcriptional regulator compare
PS417_18370 -1.4 -2.2 hypothetical protein compare
PS417_14280 -1.4 -2.3 hypothetical protein compare
PS417_08540 -1.4 -2.3 RNA helicase compare
PS417_10015 -1.4 -1.1 hypothetical protein compare
PS417_02475 -1.3 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_10665 -1.3 -2.9 hypothetical protein compare
PS417_02555 -1.3 -8.1 exoribonuclease R compare
PS417_27245 -1.3 -3.9 aminotransferase DegT compare
PS417_10405 -1.3 -1.1 filamentous hemagglutinin compare
PS417_19755 -1.3 -2.1 flagellar motor switch protein FliM compare
PS417_16490 -1.3 -1.5 cell division protein FtsK compare
PS417_04375 -1.3 -2.1 ABC transporter ATP-binding protein compare
PS417_17565 -1.3 -1.9 branched-chain amino acid aminotransferase compare
PS417_21560 -1.3 -4.1 flagellar basal body rod modification protein FlgD compare
PS417_17440 -1.3 -2.1 beta-lactamase compare
PS417_14590 -1.3 -1.6 LysR family transcriptional regulator compare
PS417_05010 -1.3 -2.1 IclR family transcriptional regulator compare
PS417_22175 -1.3 -1.3 amino acid transporter LysE compare
PS417_23360 -1.3 -1.0 hypothetical protein compare
PS417_12110 -1.2 -1.7 ATP-binding protein compare
PS417_02560 -1.2 -1.6 23S rRNA methyltransferase compare
PS417_27835 -1.2 -4.9 endoribonuclease compare
PS417_02895 -1.2 -2.1 precorrin-6Y C5,15-methyltransferase compare
PS417_26990 -1.2 -0.9 RNA pyrophosphohydrolase compare
PS417_22060 -1.2 -1.2 hypothetical protein compare
PS417_19730 -1.2 -3.9 flagellar biosynthesis protein FliR compare
PS417_19870 -1.2 -2.2 flagellar rod assembly protein FlgJ compare
PS417_15105 -1.2 -4.0 membrane protein compare
PS417_25715 -1.2 -3.6 anthranilate phosphoribosyltransferase compare
PS417_00385 -1.2 -1.0 Fur family transcriptional regulator compare
PS417_19745 -1.1 -5.2 flagellar assembly protein FliO compare
PS417_06745 -1.1 -2.0 polysaccharide deacetylase compare
PS417_19705 -1.1 -1.7 flagellar biosynthesis regulator FlhF compare
PS417_11530 -1.1 -2.8 amidase compare
PS417_17545 -1.1 -1.9 2-oxoisovalerate dehydrogenase compare
PS417_18310 -1.1 -1.3 hypothetical protein compare
PS417_01640 -1.1 -3.3 histidine kinase compare
PS417_12855 -1.1 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19665 -1.1 -1.8 flagellar motor protein MotD compare
PS417_28220 -1.1 -2.1 LysR family transcriptional regulator compare
PS417_01570 -1.1 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02005 -1.1 -5.8 glutamate synthase compare
PS417_04385 -1.1 -2.0 organic solvent ABC transporter substrate-binding protein compare
PS417_27990 -1.1 -1.6 hypothetical protein compare
PS417_22210 -1.1 -1.5 AraC family transcriptional regulator compare
PS417_07620 -1.1 -1.8 beta-hexosaminidase compare
PS417_06205 -1.1 -4.3 methionine aminopeptidase compare
PS417_06375 -1.1 -0.6 deoxycytidine triphosphate deaminase compare
PS417_19955 -1.1 -1.7 hypothetical protein compare
PS417_15110 -1.1 -4.9 protein BatD compare
PS417_27425 -1.1 -4.6 exopolyphosphatase compare
PS417_28070 -1.1 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_01565 -1.1 -4.7 imidazole glycerol phosphate synthase compare
PS417_22445 -1.0 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_25720 -1.0 -3.2 anthranilate synthase component II compare
PS417_07710 -1.0 -3.4 membrane protein compare
PS417_21255 -1.0 -2.0 hypothetical protein compare
PS417_05815 -1.0 -3.3 recombinase RecA compare
PS417_07455 -1.0 -1.6 glutamine amidotransferase compare
PS417_12805 -1.0 -5.6 glycogen branching protein compare
PS417_10995 -1.0 -1.5 GntR family transcriptional regulator compare
PS417_19655 -1.0 -2.7 chemotaxis protein CheW compare
PS417_00845 -1.0 -1.2 transcriptional regulator compare
PS417_26740 -1.0 -4.9 homoserine acetyltransferase compare
PS417_23385 -1.0 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_20160 -1.0 -2.7 cysteine synthase compare
PS417_08025 -1.0 -1.5 acetylornithine aminotransferase compare
PS417_22350 -1.0 -1.9 Fis family transcriptional regulator compare
PS417_08580 -1.0 -3.2 histidine kinase compare
PS417_21125 -1.0 -3.1 phosphoadenosine phosphosulfate reductase compare
PS417_19415 -1.0 -1.8 allantoinase compare
PS417_00995 -1.0 -1.6 alpha/beta hydrolase compare
PS417_07615 -1.0 -3.1 TetR family transcriptional regulator compare
PS417_18495 -1.0 -1.3 hypothetical protein compare
PS417_07190 -1.0 -2.8 MFS transporter compare
PS417_16520 -1.0 -2.0 cold-shock protein compare
PS417_16855 -1.0 -1.7 cation:proton antiporter compare
PS417_03380 -1.0 -1.1 hypothetical protein compare
PS417_25725 -1.0 -6.0 anthranilate synthase component I compare
PS417_19650 -1.0 -1.7 chemotaxis protein CheW compare
PS417_05840 -1.0 -2.1 LuxR family transcriptional regulator compare
PS417_05365 -0.9 -0.9 FAD-binding protein compare
PS417_17550 -0.9 -2.6 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_13255 -0.9 -2.0 ABC transporter compare
PS417_04440 -0.9 -2.1 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_25765 -0.9 -1.5 transcriptional regulator compare
PS417_26890 -0.9 -3.1 dihydroxy-acid dehydratase compare
PS417_06040 -0.9 -1.9 hypothetical protein compare
PS417_19660 -0.9 -2.5 cobalamin biosynthesis protein CobQ compare
PS417_17560 -0.9 -2.2 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_18070 -0.9 -0.9 general secretion pathway protein GspH compare
PS417_03920 -0.9 -2.8 dephospho-CoA kinase compare
PS417_18540 -0.9 -2.4 colicin V production CvpA compare
PS417_18635 -0.9 -1.8 4-hydroxybenzoyl-CoA thioesterase compare
PS417_05025 -0.9 -1.3 maleylacetoacetate isomerase compare
PS417_27870 -0.9 -2.2 ATP-dependent DNA helicase RecG compare
PS417_24155 -0.9 -1.4 ATP-binding protein compare
PS417_18600 -0.9 -1.6 isopropylmalate isomerase compare
PS417_18235 -0.9 -1.5 nitrile hydratase compare
PS417_16465 -0.9 -4.1 sirohydrochlorin ferrochelatase compare
PS417_17095 -0.9 -2.7 spore coat protein compare
PS417_01620 -0.9 -1.3 preprotein translocase subunit SecB compare
PS417_02720 -0.9 -0.7 TetR family transcriptional regulator compare
PS417_28280 -0.9 -2.1 hypothetical protein compare
PS417_00510 -0.9 -0.7 membrane protein compare
PS417_27515 -0.9 -2.1 heme biosynthesis protein HemY compare
PS417_19425 -0.9 -0.7 allantoicase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments