Experiment set19IT077 for Pseudomonas putida KT2440

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Growth at pH9 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0967 -6.6 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.9 -11.1 3-isopropylmalate dehydrogenase compare
PP_0082 -5.9 -5.7 tryptophan synthase alpha chain compare
PP_5098 -5.8 -11.1 methionine biosynthesis protein MetW compare
PP_4364 -5.7 -5.0 putative Anti-sigma F factor antagonist compare
PP_1898 -5.6 -5.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1985 -5.5 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_0966 -5.4 -10.9 Histidinol dehydrogenase compare
PP_4696 -5.2 -3.6 Nitrogen regulation protein NR(I) compare
PP_5289 -5.0 -5.7 Acetylglutamate kinase compare
PP_0422 -5.0 -5.9 Indole-3-glycerol phosphate synthase compare
PP_0083 -4.9 -8.2 tryptophan synthase beta chain compare
PP_4678 -4.8 -13.3 Ketol-acid reductoisomerase compare
PP_5097 -4.7 -11.8 homoserine O-acetyltransferase compare
PP_5185 -4.7 -9.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -4.7 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -4.7 -11.2 2-isopropylmalate synthase compare
PP_0735 -4.7 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_2001 -4.7 -8.2 O-succinylhomoserine sulfhydrylase compare
PP_1650 -4.6 -24.8 Sensor protein GacS compare
PP_2327 -4.6 -8.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4099 -4.6 -36.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4680 -4.4 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1421 -4.4 -8.5 putative Sensor histidine kinase TctE conserved
PP_0421 -4.4 -7.1 Anthranilate phosphoribosyltransferase compare
PP_3511 -4.4 -7.7 Branched-chain-amino-acid aminotransferase compare
PP_1995 -4.3 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2137 -4.2 -3.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_3999 -4.2 -10.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1986 -4.2 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.1 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1420 -4.1 -9.1 Transcriptional regulatory protein tctD conserved
PP_4098 -4.0 -2.5 UvrABC system protein C compare
PP_0292 -4.0 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -3.9 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4804 -3.9 -3.8 RlpA-like lipoprotein compare
PP_5128 -3.9 -6.6 Dihydroxy-acid dehydratase compare
PP_0368 -3.9 -8.1 putative Acyl-CoA dehydrogenase compare
PP_2371 -3.8 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -3.8 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1418 -3.6 -7.0 putative Tricarboxylate transport protein TctC conserved
PP_0184 -3.6 -6.0 Argininosuccinate lyase compare
PP_4129 -3.6 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4994 -3.5 -5.0 conserved protein of unknown function compare
PP_0417 -3.5 -11.6 Anthranilate synthase component 1 compare
PP_1088 -3.5 -9.6 Argininosuccinate synthase compare
PP_1079 -3.5 -4.8 Ornithine carbamoyltransferase compare
PP_0965 -3.5 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1826 -3.5 -3.3 Hydrolase, isochorismatase family compare
PP_2136 -3.5 -6.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4126 -3.5 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_0787 -3.5 -2.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2168 -3.4 -7.8 Transaldolase compare
PP_5015 -3.4 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4874 -3.4 -1.9 50S ribosomal protein L9 compare
PP_1231 -3.3 -6.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4909 -3.2 -6.6 phosphoserine phosphatase compare
PP_2088 -3.2 -2.9 RNA polymerase sigma factor SigX compare
PP_4785 -3.2 -4.3 conserved exported protein of unknown function compare
PP_5054 -3.1 -2.4 glutaredoxin 3 compare
PP_5303 -3.1 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0291 -3.1 -3.1 conserved protein of unknown function compare
PP_4890 -3.0 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_1734 -2.9 -4.8 Probable septum site-determining protein MinC compare
PP_5114 -2.8 -2.2 putative adenine methyltransferase compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_5217 -2.8 -7.8 Polyphosphate kinase compare
PP_4964 -2.8 -4.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4555 -2.8 -2.4 conserved protein of unknown function compare
PP_5393 -2.7 -1.9 putative metal-binding chaperone compare
PP_5095 -2.7 -1.5 pyrroline-5-carboxylate reductase compare
PP_2370 -2.7 -2.8 conserved protein of unknown function compare
PP_1994 -2.7 -3.1 tRNA pseudouridine (38-40)synthase compare
PP_0164 -2.6 -5.5 conserved protein of unknown function compare
PP_1654 -2.6 -3.9 cysteine synthase B compare
PP_1733 -2.4 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_2328 -2.4 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_0290 -2.3 -4.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4695 -2.2 -7.8 Sensory box histidine kinase compare
PP_2499 -2.2 -2.1 conserved protein of unknown function compare
PP_4131 -2.2 -6.5 NADH-quinone oxidoreductase subunit N compare
PP_1656 -2.1 -8.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0025 -2.1 -1.5 hypothetical protein compare
PP_0293 -2.1 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4329 -2.1 -2.0 FlhB domain protein compare
PP_1439 -2.0 -1.4 conserved exported protein of unknown function compare
PP_5310 -2.0 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_0719 -2.0 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2107 -1.9 -1.9 conserved protein of unknown function compare
PP_0833 -1.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_1430 -1.9 -6.8 putative periplasmic serine endoprotease DegP-like compare
PP_1655 -1.9 -2.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4835 -1.9 -2.7 conserved exported protein of unknown function compare
PP_3662 -1.8 -5.1 conserved protein of unknown function compare
PP_0420 -1.8 -4.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2800 -1.8 -5.3 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_3971 -1.7 -1.6 conserved protein of unknown function compare
PP_2441 -1.7 -3.5 conserved protein of unknown function compare
PP_2341 -1.6 -1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2313 -1.6 -2.4 conserved membrane protein of unknown function compare
PP_0888 -1.6 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1233 -1.6 -2.7 sulfurtransferase compare
PP_4693 -1.6 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_1353 -1.5 -2.2 conserved membrane protein of unknown function compare
PP_4124 -1.5 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_0434 -1.5 -3.5 Anhydro-N-acetylmuramic acid kinase compare
PP_5104 -1.5 -3.8 thiazole synthase compare
PP_0855 -1.4 -2.2 conserved protein of unknown function compare
PP_4902 -1.4 -1.3 Oligoribonuclease compare
PP_4782 -1.4 -2.9 Phosphomethylpyrimidine kinase compare
PP_3105 -1.4 -2.5 conserved membrane protein of unknown function compare
PP_0401 -1.3 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4942 -1.3 -2.7 conserved protein of unknown function compare
PP_5610 -1.3 -1.3 protein of unknown function compare
PP_4792 -1.3 -1.6 conserved exported protein of unknown function compare
PP_0948 -1.3 -1.4 Phosphocarrier protein HPr compare
PP_1664 -1.3 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_1164 -1.3 -1.7 Transcriptional regulator, LysR family compare
PP_4699 -1.2 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1128 -1.2 -1.8 OmpA family protein compare
PP_3102 -1.2 -3.3 conserved protein of unknown function compare
PP_5652 -1.2 -2.2 conserved protein of unknown function, phage origin compare
PP_4891 -1.2 -2.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3637 -1.2 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0834 -1.2 -1.6 Sec translocation complex subunit YajC compare
PP_5639 -1.1 -4.2 conserved exported protein of unknown function compare
PP_1419 -1.1 -3.9 tricarboxylate-specific outer membrane porin conserved
PP_0789 -1.1 -2.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0832 -1.1 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2878 -1.1 -1.2 conserved protein of unknown function compare
PP_3810 -1.1 -2.0 conserved protein of unknown function compare
PP_1344 -1.1 -1.3 conserved protein of unknown function compare
PP_0957 -1.1 -1.0 D-arabinose 5-phosphate isomerase compare
PP_0393 -1.1 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0949 -1.1 -2.9 putative ATP-binding protein UPF0042 compare
PP_1224 -1.1 -3.2 periplasmic subunit of the TolQRA transport system compare
PP_1774 -1.1 -1.2 conserved exported protein of unknown function compare
PP_5145 -1.1 -7.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3341 -1.1 -2.6 nickel-responsive regulator compare
PP_5221 -1.1 -1.4 conserved protein of unknown function, UPF0178 family compare
PP_4253 -1.1 -1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_3117 -1.1 -2.7 putative protein involved in error-prone processing of DNA lesions compare
PP_0673 -1.1 -2.0 conserved protein of unknown function compare
PP_0339 -1.1 -0.7 Pyruvate dehydrogenase E1 component compare
PP_2203 -1.1 -1.6 conserved protein of unknown function compare
PP_5007 -1.1 -1.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4480 -1.1 -3.7 arginine N-succinyltransferase, subunit alpha compare
PP_4829 -1.1 -1.5 putative precorrin-3B synthase compare
PP_1493 -1.1 -1.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1417 -1.0 -2.2 putative Tricarboxylate transport protein TctB compare
PP_4340 -1.0 -2.4 response regulator for chemotactic signal transduction compare
PP_1348 -1.0 -2.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1829 -1.0 -1.6 Hydrolase, alpha/beta fold family compare
PP_5321 -1.0 -4.0 two-component system sensory histidine kinase compare
PP_t11 -1.0 -1.2 tRNA-Lys compare
PP_4724 -1.0 -0.7 Carbamoyl-phosphate synthase small chain compare
PP_5486 -1.0 -1.6 conserved protein of unknown function compare
PP_2044 -1.0 -1.4 conserved inner membrane protein of unknown function compare
PP_0900 -1.0 -1.8 PAP2 family protein compare
PP_5320 -1.0 -2.5 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_1416 -1.0 -4.0 putative Tricarboxylate transport protein TctA compare
PP_1048 -1.0 -1.2 putative protein secretion protein for export compare
PP_0138 -1.0 -4.6 conserved membrane protein of unknown function compare
PP_4706 -1.0 -2.0 conserved protein of unknown function compare
PP_0181 -0.9 -2.0 conserved protein of unknown function compare
PP_1045 -0.9 -1.5 Type II secretion pathway protein XcpP compare
PP_5644 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_0122 -0.9 -2.1 conserved exported protein of unknown function compare
PP_t29 -0.9 -0.7 tRNA-Ala compare
PP_0406 -0.9 -1.3 Nucleotidyltransferase family protein compare
PP_1309 -0.9 -4.3 conserved exported protein of unknown function compare
PP_5507 -0.9 -2.1 protein of unknown function compare
PP_3590 -0.9 -3.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4925 -0.9 -2.0 conserved protein of unknown function compare
PP_1764 -0.9 -1.4 Phosphoglycolate phosphatase 2 compare
PP_4263 -0.9 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4977 -0.9 -4.2 5,10-methylenetetrahydrofolate reductase compare
PP_3963 -0.9 -2.1 conserved protein of unknown function compare
PP_1268 -0.9 -1.0 putative HtrA suppressor protein sohA compare
PP_1142 -0.9 -0.8 conserved protein of unknown function compare
PP_5327 -0.9 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_4660 -0.9 -3.0 Transcriptional regulator, LysR family compare
PP_4798 -0.9 -3.3 putative Membrane-bound lytic murein transglycosylase compare
PP_4265 -0.9 -0.6 DNA-binding transcriptional dual regulator compare
PP_4406 -0.9 -2.1 conserved protein of unknown function compare
PP_4710 -0.9 -4.2 tRNA pseudouridine 55 synthase compare
PP_2309 -0.9 -1.0 conserved protein of unknown function compare
PP_5678 -0.9 -2.1 protein of unknown function compare
PP_3770 -0.9 -1.7 conserved protein of unknown function compare
PP_1198 -0.9 -1.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0035 -0.9 -1.6 putative bactoprenol-linked glycose transferase compare
PP_0003 -0.9 -1.5 16S RNA methyltransferase compare
PP_1689 -0.9 -4.7 putative Long-chain fatty acid transporter compare
PP_5574 -0.9 -2.4 conserved protein of unknown function compare
PP_1824 -0.9 -0.6 Smr domain protein compare
PP_1633 -0.9 -1.6 conserved exported protein of unknown function compare
PP_2187 -0.8 -2.7 Universal stress protein family compare
PP_2908 -0.8 -2.8 DNA-binding transcriptional repressor compare
PP_2231 -0.8 -1.6 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_t49 -0.8 -2.6 tRNA-Met compare


Specific Phenotypes

For 5 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms