Experiment set19IT077 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source Trisodium citrate dihydrate

200 most detrimental genes:

  gene name fitness t score description  
PP_3726 +1.5 1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_2847 +1.4 3.0 Urease accessory protein UreJ compare
PP_1186 +1.3 2.5 two component system DNA-binding transcriptional dual regulator compare
PP_5328 +1.2 2.1 putative phosphate transport system permease protein compare
PP_5000 +1.2 1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4162 +1.2 3.6 conserved membrane protein of unknown function compare
PP_5216 +1.2 2.3 exopolyphosphatase compare
PP_5495 +1.1 2.7 protein of unknown function compare
PP_1410 +1.1 1.3 conserved protein of unknown function compare
PP_4247 +1.1 1.7 Exonuclease compare
PP_5654 +1.1 2.7 putative phosphotriesterase compare
PP_5604 +1.1 1.9 putative subtilisin-like serine protease compare
PP_1575 +1.1 1.9 conserved protein of unknown function compare
PP_2950 +1.1 2.2 conserved protein of unknown function compare
PP_1055 +1.0 2.0 Type II secretion pathway protein GspN compare
PP_1122 +1.0 1.7 OmpA family protein compare
PP_0984 +1.0 2.9 conserved membrane protein of unknown function compare
PP_0065 +1.0 2.5 NAD-binding component of TrK potassium transporter compare
PP_1020 +1.0 2.7 putative glucose-6-phosphate 1-epimerase compare
PP_3551 +1.0 2.1 DNA-binding response regulator, LuxR family compare
PP_4561 +1.0 1.3 stress response protein compare
PP_1215 +1.0 1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_3407 +1.0 3.2 conserved protein of unknown function compare
PP_5453 +0.9 2.4 conserved protein of unknown function compare
PP_4196 +0.9 2.7 conserved exported protein of unknown function compare
PP_0440 +0.9 2.0 Elongation factor Tu-A compare
PP_5489 +0.9 1.9 conserved protein of unknown function compare
PP_4045 +0.9 2.1 conserved protein of unknown function compare
PP_3580 +0.8 1.7 conserved protein of unknown function compare
PP_4944 +0.8 1.6 Carbamoyltransferase compare
PP_4808 +0.8 2.4 23S rRNA m3psi1915 methyltransferase compare
PP_t12 +0.8 1.1 tRNA-Thr compare
PP_2280 +0.8 1.3 conserved protein of unknown function compare
PP_5201 +0.8 2.2 conserved protein of unknown function, UPF0149 family compare
PP_5225 +0.8 1.3 frataxin compare
PP_1560 +0.8 2.8 conserved protein of unknown function compare
PP_5317 +0.8 1.4 Probable chorismate pyruvate-lyase compare
PP_0040 +0.8 1.9 hypothetical protein compare
PP_1778 +0.8 4.4 Lipopolysaccharide ABC export system, permease protein compare
PP_1731 +0.8 2.1 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_3541 +0.8 1.9 Transporter, MgtC family compare
PP_3916 +0.8 1.4 conserved protein of unknown function compare
PP_1864 +0.8 2.3 conserved protein of unknown function compare
PP_5337 +0.7 3.2 LysR family transcriptional regulator compare
PP_1325 +0.7 3.6 putative lipoprotein compare
PP_5706 +0.7 1.3 Sec translocation complex - SecG subunit compare
PP_3447 +0.7 0.9 conserved membrane protein of unknown function compare
PP_1779 +0.7 3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5520 +0.7 2.1 conserved protein of unknown function compare
PP_1844 +0.7 2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4207 +0.7 1.8 conserved protein of unknown function compare
PP_2622 +0.7 1.2 conserved protein of unknown function compare
PP_4073 +0.7 1.6 conserved exported protein of unknown function compare
PP_1214 +0.7 1.4 putative transcriptional regulatory protein compare
PP_2725 +0.7 1.5 Protease PfpI compare
PP_5084 +0.7 4.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2525 +0.7 2.2 conserved protein of unknown function compare
PP_4136 +0.7 0.6 Transcriptional regulator, LuxR family compare
PP_4342 +0.7 2.2 flagellar synthesis regulator, putative ATPase compare
PP_3735 +0.7 2.7 ABC transporter ATP-binding protein compare
PP_4946 +0.7 3.4 sodium/L-proline transporter compare
PP_t10 +0.7 1.3 tRNA-Pro compare
PP_2121 +0.7 1.0 putative Lipoprotein compare
PP_1623 +0.7 3.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1087 +0.7 3.4 Outer membrane protein, OmpA family compare
PP_1574 +0.7 2.7 conserved protein of unknown function compare
PP_1763 +0.7 1.3 putative oxidoreductase compare
PP_1319 +0.7 2.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3318 +0.7 1.3 conserved protein of unknown function compare
PP_5569 +0.7 1.9 protein of unknown function of phage origin compare
PP_0676 +0.6 2.2 putative Transcription elongation factor compare
PP_5240 +0.6 1.4 Response regulator compare
PP_3052 +0.6 0.9 conserved protein of unknown function compare
PP_3487 +0.6 2.2 conserved exported protein of unknown function compare
PP_3201 +0.6 1.8 BNR domain protein compare
PP_4545 +0.6 2.4 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_3906 +0.6 1.2 conserved protein of unknown function compare
PP_3876 +0.6 1.4 conserved protein of unknown function compare
PP_0683 +0.6 1.0 conserved protein of unknown function compare
PP_5140 +0.6 2.1 Transcriptional regulator, MerR family compare
PP_1569 +0.6 2.9 conserved protein of unknown function compare
PP_1022 +0.6 2.1 glucose 6-phosphate-1-dehydrogenase compare
PP_3367 +0.6 2.6 conserved protein of unknown function compare
PP_3866 +0.6 1.7 conserved protein of unknown function compare
PP_3941 +0.6 2.7 maleamate amidohydrolase compare
PP_3074 +0.6 2.6 D-beta-hydroxybutyrate permease compare
PP_4943 +0.6 0.8 putative Glycosyl transferase compare
PP_5572 +0.6 1.7 protein of unknown function compare
PP_2131 +0.6 2.8 DNA-binding ATPase involved in replication compare
PP_3989 +0.6 2.8 DNA-cytosine methyltransferase compare
PP_2459 +0.6 1.8 ribose pyranase compare
PP_1074 +0.6 1.2 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4997 +0.6 1.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5537 +0.6 2.0 conserved membrane protein of unknown function compare
PP_4482 +0.6 1.5 Transcriptional regulator, AraC family compare
PP_2907 +0.6 1.4 DNA-binding response regulator compare
PP_0313 +0.6 2.1 putative electron transfer flavoprotein beta subunit compare
PP_1349 +0.6 2.3 ATP:cob(I)alamin adenosyltransferase compare
PP_4223 +0.6 0.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0408 +0.6 3.0 conserved exported protein of unknown function compare
PP_1455 +0.6 1.2 conserved protein of unknown function compare
PP_5469 +0.6 2.5 putative SAM-dependent methyltransferase compare
PP_3926 +0.6 0.8 short-chain dehydrogenase compare
PP_1691 +0.6 1.1 conserved protein of unknown function compare
PP_1364 +0.6 3.2 conserved exported protein of unknown function compare
PP_1371 +0.6 2.5 Methyl-accepting chemotaxis protein PctA compare
PP_3314 +0.6 2.2 Heat shock protein, HSP20 family compare
PP_5248 +0.6 1.0 putative hydrolase compare
PP_1367 +0.6 2.0 formyltetrahydrofolate hydrolase compare
PP_3748 +0.6 2.0 conserved hypothetical protein compare
PP_4452 +0.6 1.7 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_t57 +0.6 2.5 tRNA-Arg compare
PP_2378 +0.6 1.3 Fe/S biogenesis protein NfuA compare
PP_3539 +0.6 1.5 putative Transcriptional regulator compare
PP_5143 +0.6 0.8 conserved membrane protein of unknown function compare
PP_5073 +0.6 1.0 conserved exported protein of unknown function compare
PP_2291 +0.6 1.2 conserved protein of unknown function compare
PP_0804 +0.6 3.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2784 +0.6 1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5487 +0.6 1.1 conserved protein of unknown function compare
PP_5687 +0.6 1.7 putative permease of the major facilitator superfamily compare
PP_3903 +0.6 0.8 conserved protein of unknown function compare
PP_3888 +0.6 1.1 conserved protein of unknown function compare
PP_3743 +0.5 1.5 conserved exported protein of unknown function compare
PP_3530 +0.5 1.9 putative S-ureidoglycine aminohydrolase compare
PP_1176 +0.5 1.2 conserved protein of unknown function compare
PP_5230 +0.5 1.1 Tyrosine recombinase XerC compare
PP_4449 +0.5 1.5 conserved protein of unknown function compare
PP_4151 +0.5 1.3 Excisionase domain protein compare
PP_0852 +0.5 2.5 Transcriptional regulator, Cro/CI family compare
PP_0874 +0.5 0.6 conserved protein of unknown function compare
PP_4843 +0.5 1.6 putative Urea ABC transporter, permease protein compare
PP_4904 +0.5 3.1 Flagellar motor rotation protein compare
PP_4681 +0.5 1.0 conserved protein of unknown function compare
PP_1999 +0.5 0.6 membrane protein required for colicin V production compare
PP_2581 +0.5 1.0 conserved protein of unknown function compare
PP_1041 +0.5 1.2 twin arginine protein export complex subunit compare
PP_4538 +0.5 2.3 FMN-dependent NADH-azoreductase 2 compare
PP_5021 +0.5 2.0 Methyl-accepting chemotaxis transducer compare
PP_3904 +0.5 1.8 conserved protein of unknown function compare
PP_4980 +0.5 1.6 ATP-dependent RNA helicase compare
PP_2053 +0.5 1.7 conserved protein of unknown function compare
PP_0236 +0.5 1.2 NAD(P)H-dependent FMN reductase subunit compare
PP_1208 +0.5 1.1 conserved protein of unknown function, SlyX family compare
PP_4847 +0.5 1.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_5745 +0.5 2.3 paraquat-inducible protein A compare
PP_2701 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_2071 +0.5 2.0 conserved protein of unknown function compare
PP_3505 +0.5 1.0 conserved protein of unknown function compare
PP_4743 +0.5 1.6 conserved protein of unknown function compare
PP_4837 +0.5 1.3 conserved protein of unknown function compare
PP_2046 +0.5 1.9 Transcriptional regulator, LysR family compare
PP_4254 +0.5 1.3 conserved protein of unknown function compare
PP_0116 +0.5 1.9 putative lipoprotein compare
PP_0355 +0.5 3.0 Response regulator compare
PP_4500 +0.5 1.4 TrpH family protein compare
PP_1201 +0.5 2.4 conserved exported protein of unknown function compare
PP_3900 +0.5 1.8 hypothetical protein compare
PP_3365 +0.5 0.7 Acetolactate synthase compare
PP_0022 +0.5 0.7 hypothetical protein compare
PP_0153 +0.5 1.1 hypothetical protein compare
PP_2794 +0.5 0.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0137 +0.5 2.8 glutamate/aspartate-proton DAACS transporter compare
PP_3747 +0.5 1.7 glycolate oxidase, iron-sulfur subunit compare
PP_1368 +0.5 2.2 putative membrane protein containing a glycosyltransferase domain compare
PP_3882 +0.5 1.5 putative Phage terminase, small subunit compare
PP_3305 +0.5 2.4 Membrane protein, TerC family compare
PP_2695 +0.5 1.3 Transcriptional regulator, LysR family compare
PP_1862 +0.5 1.6 conserved membrane protein of unknown function compare
PP_4941 +0.5 1.9 conserved exported protein of unknown function compare
PP_4627 +0.5 2.2 transcriptional regulator, LysR family compare
PP_3902 +0.5 1.6 conserved protein of unknown function compare
PP_4503 +0.5 1.0 DNA-binding response regulator compare
PP_2503 +0.5 1.7 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4240 +0.5 1.7 putative Microcin b17 processing protein mcbd compare
PP_5528 +0.5 0.9 conserved protein of unknown function compare
PP_3773 +0.5 0.7 conserved protein of unknown function compare
PP_0225 +0.5 1.5 sulfur compound ABC transporter - ATP-binding subunit compare
PP_2018 +0.5 1.6 adhesin-associated BNR repeat protein (from data) compare
PP_3417 +0.5 2.6 D-gluconate transporter compare
PP_2030 +0.5 1.9 conserved protein of unknown function compare
PP_4385 +0.5 1.7 flagellar basal-body rod protein FlgG compare
PP_3766 +0.5 1.3 Lactoylglutathione lyase compare
PP_5586 +0.5 1.3 exported protein of unknown function compare
PP_0195 +0.5 1.1 conserved protein of unknown function compare
PP_1051 +0.5 1.6 Type II secretion pathway protein XcpV compare
PP_0608 +0.5 1.4 putative type 4 fimbrial biogenesis protein compare
PP_3969 +0.5 1.7 Response regulator compare
PP_3094 +0.5 0.9 conserved exported protein of unknown function compare
PP_2816 +0.5 1.8 putative Transcriptional regulator NfxB compare
PP_4362 +0.5 1.0 conserved protein of unknown function compare
PP_1787 +0.5 1.5 conserved protein of unknown function compare
PP_5726 +0.5 2.2 conserved protein of unknown function compare
PP_5701 +0.5 0.7 conserved protein of unknown function compare
PP_1589 +0.5 2.6 uridylyltransferase compare
PP_5167 +0.5 1.0 conserved hypothetical protein compare
PP_0653 +0.5 0.7 conserved protein of unknown function compare
PP_4989 +0.5 1.5 Protein PilJ compare
PP_3851 +0.5 1.5 conserved protein of unknown function compare
PP_5670 +0.5 1.5 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms