Experiment set19IT077 for Pseudomonas putida KT2440
Growth at pH9 and carbon source Trisodium citrate dihydrate
Group: pHMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + Trisodium citrate dihydrate (10 mM) + Ammonium chloride (10 mM) + AMPSO (40 mM), pH=9
Culturing: Putida_ML5_PNNL, 96 deep-well microplate; 1 mL volume, Aerobic, at 30 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 5 genes in this experiment
For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440
For pH Trisodium citrate dihydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ectoine biosynthesis and regulation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycine, serine and threonine metabolism
- Methionine metabolism
- Lysine biosynthesis
- Lysine degradation
- Arginine and proline metabolism
- Aminophosphonate metabolism
- Nucleotide sugars metabolism
- Caprolactam degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| ectoine degradation | 4 | 3 | 1 |
| ectoine biosynthesis | 5 | 3 | 1 |
| norspermidine biosynthesis | 6 | 4 | 1 |
| rhizobactin 1021 biosynthesis | 7 | 1 | 1 |
| superpathway of polyamine biosynthesis III | 8 | 5 | 1 |
| pyoverdine I biosynthesis | 11 | 7 | 1 |
| baumannoferrin biosynthesis | 11 | 1 | 1 |