Experiment set19IT075 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21480 -4.0 -2.2 23S rRNA pseudouridylate synthase compare
PS417_04380 -3.8 -2.3 ABC transporter permease compare
PS417_18310 -3.7 -3.0 hypothetical protein compare
PS417_20985 -3.2 -3.1 porin compare
PS417_23025 -3.1 -8.3 murein transglycosylase compare
PS417_22565 -3.0 -1.5 formyltetrahydrofolate deformylase compare
PS417_27795 -2.7 -1.3 orotate phosphoribosyltransferase compare
PS417_27040 -2.6 -3.2 3-phosphoglycerate dehydrogenase compare
PS417_02415 -2.6 -3.7 phosphoserine phosphatase compare
PS417_23995 -2.5 -1.2 preprotein translocase subunit SecG compare
PS417_23810 -2.3 -9.7 acetolactate synthase 3 catalytic subunit compare
PS417_23770 -2.1 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.1 -1.5 ATP-binding protein compare
PS417_21430 -2.1 -2.7 3-oxoacyl-ACP synthase compare
PS417_26605 -2.1 -1.1 malonate decarboxylase subunit beta compare
PS417_04650 -2.0 -1.3 D-alanine--D-alanine ligase compare
PS417_27300 -2.0 -1.2 cell division protein ZapA compare
PS417_21630 -2.0 -2.5 magnesium transporter compare
PS417_27800 -1.9 -3.2 exodeoxyribonuclease III compare
PS417_23375 -1.9 -2.0 cytochrome C oxidase compare
PS417_00185 -1.7 -2.6 tryptophan synthase subunit beta compare
PS417_28070 -1.7 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_06680 -1.7 -4.8 nuclease PIN compare
PS417_03260 -1.7 -1.8 5S ribosomal RNA compare
PS417_01635 -1.6 -5.2 nitrogen regulation protein NR(I) compare
PS417_15105 -1.6 -6.5 membrane protein compare
PS417_04420 -1.6 -7.1 histidinol dehydrogenase compare
PS417_23800 -1.6 -7.9 ketol-acid reductoisomerase compare
PS417_18595 -1.6 -3.2 3-isopropylmalate dehydratase compare
PS417_00755 -1.6 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_02510 -1.6 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04595 -1.5 -2.6 cell division protein MraZ compare
PS417_22520 -1.5 -1.6 histidine kinase compare
PS417_04960 -1.5 -2.3 hypothetical protein compare
PS417_08135 -1.5 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21595 -1.5 -4.0 flagellar biosynthesis protein FlgN compare
PS417_23380 -1.5 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_26890 -1.5 -5.6 dihydroxy-acid dehydratase compare
PS417_15285 -1.5 -1.3 type VI secretion protein compare
PS417_19725 -1.5 -4.5 flagellar biosynthesis protein FlhB compare
PS417_24745 -1.5 -3.4 gamma-glutamyl phosphate reductase compare
PS417_01575 -1.4 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08155 -1.4 -1.8 integration host factor subunit beta compare
PS417_15875 -1.4 -2.3 LuxR family transcriptional regulator compare
PS417_01855 -1.4 -3.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_19765 -1.4 -6.2 flagellar hook-length control protein compare
PS417_09470 -1.4 -1.3 hypothetical protein compare
PS417_15095 -1.4 -2.4 hypothetical protein compare
PS417_08025 -1.3 -1.6 acetylornithine aminotransferase compare
PS417_17545 -1.3 -3.7 2-oxoisovalerate dehydrogenase compare
PS417_21565 -1.3 -4.7 flagellar basal body rod protein FlgC compare
PS417_06200 -1.3 -5.9 protein-PII uridylyltransferase compare
PS417_05815 -1.3 -3.4 recombinase RecA compare
PS417_21585 -1.3 -8.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_27195 -1.3 -1.1 N-acetylglutamate synthase compare
PS417_01640 -1.3 -4.3 histidine kinase compare
PS417_19850 -1.3 -5.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19860 -1.3 -8.3 flagellar hook protein FlgL compare
PS417_19695 -1.3 -6.2 flagellar biosynthesis sigma factor compare
PS417_19095 -1.2 -1.5 hypothetical protein compare
PS417_18560 -1.2 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_08540 -1.2 -2.4 RNA helicase compare
PS417_01565 -1.2 -4.0 imidazole glycerol phosphate synthase compare
PS417_12855 -1.2 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27135 -1.2 -0.9 glutamine synthetase compare
PS417_19880 -1.2 -7.2 flagellar basal body L-ring protein compare
PS417_15085 -1.2 -2.9 ATPase AAA compare
PS417_01580 -1.2 -1.5 imidazole glycerol phosphate synthase compare
PS417_04375 -1.2 -1.9 ABC transporter ATP-binding protein compare
PS417_04415 -1.2 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_03380 -1.2 -1.4 hypothetical protein compare
PS417_11945 -1.2 -1.1 hypothetical protein compare
PS417_19865 -1.2 -7.3 flagellar hook protein FlgK compare
PS417_24500 -1.2 -3.0 DEAD/DEAH box helicase compare
PS417_02555 -1.2 -7.6 exoribonuclease R compare
PS417_22445 -1.2 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_19795 -1.2 -8.7 flagellar assembly protein FliH compare
PS417_06635 -1.2 -1.5 ferredoxin compare
PS417_19825 -1.2 -8.4 ATPase AAA compare
PS417_02820 -1.1 -3.2 urea ABC transporter ATP-binding protein compare
PS417_15110 -1.1 -4.5 protein BatD compare
PS417_21070 -1.1 -1.5 aconitate hydratase compare
PS417_21555 -1.1 -5.5 flagellar hook protein FlgE compare
PS417_25725 -1.1 -6.4 anthranilate synthase component I compare
PS417_02800 -1.1 -1.9 acetyltransferase compare
PS417_22450 -1.1 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_06845 -1.1 -1.4 lipoprotein compare
PS417_18780 -1.1 -1.6 flavin reductase compare
PS417_05160 -1.1 -1.0 DNA polymerase III subunit chi compare
PS417_27870 -1.1 -2.3 ATP-dependent DNA helicase RecG compare
PS417_07640 -1.1 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_15935 -1.1 -1.9 Rrf2 family transcriptional regulator compare
PS417_02950 -1.1 -1.7 tRNA-dihydrouridine synthase B compare
PS417_00370 -1.1 -1.1 hypothetical protein compare
PS417_06540 -1.0 -1.3 membrane protein compare
PS417_18600 -1.0 -1.8 isopropylmalate isomerase compare
PS417_00065 -1.0 -1.5 3-methyladenine DNA glycosylase compare
PS417_19740 -1.0 -2.7 flagellar biosynthesis protein flip compare
PS417_16510 -1.0 -3.2 Clp protease ClpX compare
PS417_01560 -1.0 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_05635 -1.0 -5.8 membrane protein compare
PS417_01185 -1.0 -3.2 ribosomal protein S6 modification protein compare
PS417_19885 -1.0 -2.0 flagellar basal body rod protein FlgG compare
PS417_08125 -1.0 -0.5 prephenate dehydratase compare
PS417_06205 -1.0 -5.2 methionine aminopeptidase compare
PS417_28220 -1.0 -2.2 LysR family transcriptional regulator compare
PS417_16195 -1.0 -1.1 AraC family transcriptional regulator compare
PS417_25720 -1.0 -2.8 anthranilate synthase component II compare
PS417_21570 -1.0 -4.3 flagellar basal body rod protein FlgB compare
PS417_02005 -1.0 -5.1 glutamate synthase compare
PS417_28080 -1.0 -6.9 phosphate ABC transporter permease compare
PS417_19735 -1.0 -4.1 flagellar biosynthesis protein FliQ compare
PS417_28145 -1.0 -1.6 AraC family transcriptional regulator compare
PS417_02000 -1.0 -5.6 glutamate synthase compare
PS417_23805 -1.0 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_16715 -1.0 -1.1 DoxX family protein compare
PS417_01115 -1.0 -1.1 serine acetyltransferase compare
PS417_17550 -1.0 -2.0 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_19745 -1.0 -3.8 flagellar assembly protein FliO compare
PS417_18395 -1.0 -1.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_21355 -1.0 -2.3 hypothetical protein compare
PS417_11530 -1.0 -2.7 amidase compare
PS417_26770 -1.0 -1.3 tRNA (guanine-N7)-methyltransferase compare
PS417_13165 -1.0 -1.9 peroxidase compare
PS417_23370 -0.9 -3.3 protoheme IX farnesyltransferase compare
PS417_09010 -0.9 -1.6 phosphohistidine phosphatase compare
PS417_19730 -0.9 -2.0 flagellar biosynthesis protein FliR compare
PS417_17565 -0.9 -2.5 branched-chain amino acid aminotransferase compare
PS417_12805 -0.9 -5.1 glycogen branching protein compare
PS417_16555 -0.9 -1.4 cupin compare
PS417_18585 -0.9 -3.8 3-isopropylmalate dehydrogenase compare
PS417_11585 -0.9 -1.6 LuxR family transcriptional regulator compare
PS417_20610 -0.9 -1.3 hypothetical protein compare
PS417_15805 -0.9 -1.5 transporter compare
PS417_27865 -0.9 -1.8 LysR family transcriptional regulator compare
PS417_26695 -0.9 -1.1 uracil phosphoribosyltransferase compare
PS417_08250 -0.9 -1.6 competence protein ComEA compare
PS417_23545 -0.9 -1.5 gamma-glutamyl kinase compare
PS417_26365 -0.9 -1.2 EmrB/QacA subfamily drug resistance transporter compare
PS417_02225 -0.9 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_19565 -0.9 -2.5 TetR family transcriptional regulator compare
PS417_10985 -0.9 -0.9 NADH:flavin oxidoreductase compare
PS417_09210 -0.9 -1.3 TetR family transcriptional regulator compare
PS417_06245 -0.9 -0.8 zinc metallopeptidase RseP compare
PS417_19710 -0.9 -4.4 flagellar biosynthesis protein FlhA compare
PS417_14515 -0.8 -1.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_00825 -0.8 -2.4 recombinase RecF compare
PS417_21780 -0.8 -2.0 argininosuccinate lyase compare
PS417_23625 -0.8 -2.3 LysR family transcriptional regulator compare
PS417_26655 -0.8 -2.7 chemotaxis protein compare
PS417_07010 -0.8 -1.9 pseudouridine synthase compare
PS417_12005 -0.8 -2.3 hypothetical protein compare
PS417_19840 -0.8 -4.8 flagellar cap protein FliD compare
PS417_19785 -0.8 -3.1 flagellar biogenesis protein compare
PS417_05865 -0.8 -1.5 hypothetical protein compare
PS417_01510 -0.8 -1.8 hypothetical protein compare
PS417_20160 -0.8 -2.1 cysteine synthase compare
PS417_10145 -0.8 -0.9 hypothetical protein compare
PS417_10060 -0.8 -1.5 hypothetical protein compare
PS417_28085 -0.8 -5.2 phosphate-binding protein compare
PS417_28075 -0.8 -3.2 phosphate ABC transporter permease compare
PS417_25715 -0.8 -2.6 anthranilate phosphoribosyltransferase compare
PS417_21210 -0.8 -2.2 amidotransferase compare
PS417_16055 -0.8 -2.5 biopolymer transporter TolR compare
PS417_08380 -0.8 -2.8 ABC transporter ATP-binding protein compare
PS417_23385 -0.8 -3.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_00045 -0.8 -1.5 glycerol acyltransferase compare
PS417_14940 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_07940 -0.8 -2.2 hypothetical protein compare
PS417_02805 -0.8 -1.2 urease subunit gamma compare
PS417_16910 -0.8 -3.2 multidrug resistance protein B compare
PS417_22175 -0.8 -1.3 amino acid transporter LysE compare
PS417_18530 -0.8 -2.9 O-succinylhomoserine sulfhydrylase compare
PS417_28450 -0.8 -1.3 XRE family transcriptional regulator compare
PS417_07575 -0.8 -2.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_24560 -0.8 -1.6 ferrous iron transporter compare
PS417_12870 -0.8 -1.6 enoyl-CoA hydratase compare
PS417_26745 -0.8 -3.1 methionine biosynthesis protein MetW compare
PS417_25710 -0.8 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_27035 -0.8 -1.9 FAD-linked oxidase compare
PS417_18930 -0.8 -1.2 restriction endonuclease subunit S compare
PS417_26740 -0.7 -2.8 homoserine acetyltransferase compare
PS417_27425 -0.7 -3.4 exopolyphosphatase compare
PS417_20170 -0.7 -1.9 hypothetical protein compare
PS417_07845 -0.7 -1.8 transcriptional regulator compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_28185 -0.7 -2.3 homocysteine methyltransferase compare
PS417_25815 -0.7 -2.1 magnesium transporter ApaG compare
PS417_07795 -0.7 -1.6 hypothetical protein compare
PS417_05570 -0.7 -2.6 DeoR faimly transcriptional regulator compare
PS417_23110 -0.7 -3.4 2-isopropylmalate synthase compare
PS417_05595 -0.7 -4.2 ornithine carbamoyltransferase compare
PS417_19830 -0.7 -1.9 flagellar assembly protein FliT compare
PS417_07710 -0.7 -2.5 membrane protein compare
PS417_21575 -0.7 -2.9 chemotaxis protein compare
PS417_18885 -0.7 -1.0 GntR family transcriptional regulator compare
PS417_26550 -0.7 -1.8 ABC transporter compare
PS417_18435 -0.7 -1.9 hypothetical protein compare
PS417_02560 -0.7 -1.0 23S rRNA methyltransferase compare
PS417_19690 -0.7 -3.3 histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments