Experiment set19IT073 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine disodium salt; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22450 -3.6 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_22565 -3.0 -1.5 formyltetrahydrofolate deformylase compare
PS417_08125 -2.8 -0.9 prephenate dehydratase compare
PS417_14940 -2.7 -2.5 LysR family transcriptional regulator compare
PS417_27865 -2.7 -4.8 LysR family transcriptional regulator compare
PS417_04650 -2.7 -1.2 D-alanine--D-alanine ligase compare
PS417_09725 -2.6 -7.7 transporter compare
PS417_27800 -2.6 -3.0 exodeoxyribonuclease III compare
PS417_02415 -2.2 -4.3 phosphoserine phosphatase compare
PS417_23380 -2.2 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_15095 -2.1 -4.4 hypothetical protein compare
PS417_01605 -2.1 -1.5 phosphoglycerate mutase compare
PS417_23770 -2.1 -2.4 exodeoxyribonuclease V subunit alpha compare
PS417_08155 -2.0 -1.6 integration host factor subunit beta compare
PS417_27795 -1.9 -1.1 orotate phosphoribosyltransferase compare
PS417_06680 -1.9 -6.9 nuclease PIN compare
PS417_26900 -1.8 -1.5 L-cystine transporter tcyP compare
PS417_21630 -1.8 -1.9 magnesium transporter compare
PS417_01560 -1.7 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_05815 -1.7 -3.7 recombinase RecA compare
PS417_04595 -1.7 -2.7 cell division protein MraZ compare
PS417_23375 -1.6 -2.4 cytochrome C oxidase compare
PS417_06205 -1.6 -7.7 methionine aminopeptidase compare
PS417_27135 -1.6 -1.1 glutamine synthetase compare
PS417_23025 -1.5 -5.8 murein transglycosylase compare
PS417_01145 -1.5 -1.1 taurine transporter ATP-binding subunit compare
PS417_27870 -1.5 -2.3 ATP-dependent DNA helicase RecG compare
PS417_04305 -1.4 -1.6 aspartate ammonia-lyase compare
PS417_08540 -1.4 -2.6 RNA helicase compare
PS417_27040 -1.4 -2.6 3-phosphoglycerate dehydrogenase compare
PS417_23810 -1.3 -5.9 acetolactate synthase 3 catalytic subunit compare
PS417_24935 -1.3 -1.2 hypothetical protein compare
PS417_02975 -1.3 -4.2 3-dehydroquinate dehydratase compare
PS417_20025 -1.2 -2.0 alpha-ribazole phosphatase compare
PS417_00180 -1.2 -2.4 tryptophan synthase subunit alpha compare
PS417_15135 -1.2 -1.5 hypothetical protein compare
PS417_16825 -1.2 -1.7 membrane protein compare
PS417_26985 -1.2 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23385 -1.2 -5.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_02895 -1.1 -1.4 precorrin-6Y C5,15-methyltransferase compare
PS417_22375 -1.1 -0.8 cold-shock protein compare
PS417_03560 -1.1 -1.2 GTP-binding protein compare
PS417_28070 -1.1 -4.9 phosphate ABC transporter ATP-binding protein compare
PS417_12805 -1.1 -6.7 glycogen branching protein compare
PS417_28080 -1.1 -7.0 phosphate ABC transporter permease compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_19095 -1.1 -1.6 hypothetical protein compare
PS417_14985 -1.1 -1.8 Fe-S protein compare
PS417_08135 -1.1 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28020 -1.0 -2.8 chorismate--pyruvate lyase compare
PS417_09730 -1.0 -1.9 adenylylsulfate kinase compare
PS417_15325 -1.0 -1.1 type VI secretion protein compare
PS417_22445 -1.0 -2.5 ATP-dependent DNA helicase RuvB compare
PS417_02560 -1.0 -1.4 23S rRNA methyltransferase compare
PS417_23370 -1.0 -2.7 protoheme IX farnesyltransferase compare
PS417_20985 -1.0 -1.7 porin compare
PS417_11530 -1.0 -3.6 amidase compare
PS417_00705 -1.0 -1.4 MarR family transcriptional regulator compare
PS417_09235 -1.0 -1.0 molecular chaperone compare
PS417_04375 -1.0 -2.0 ABC transporter ATP-binding protein compare
PS417_12515 -1.0 -1.7 lactate dehydrogenase compare
PS417_06375 -1.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_07710 -1.0 -2.8 membrane protein compare
PS417_03455 -1.0 -1.5 type III secretion protein compare
PS417_00045 -0.9 -1.7 glycerol acyltransferase compare
PS417_19275 -0.9 -0.7 hypothetical protein compare
PS417_10985 -0.9 -0.9 NADH:flavin oxidoreductase compare
PS417_14590 -0.9 -1.5 LysR family transcriptional regulator compare
PS417_18070 -0.9 -1.0 general secretion pathway protein GspH compare
PS417_19605 -0.9 -1.2 hypothetical protein compare
PS417_04875 -0.9 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26660 -0.9 -3.1 protein PilI compare
PS417_01920 -0.9 -0.9 ATP-dependent protease subunit HslV compare
PS417_27195 -0.9 -1.2 N-acetylglutamate synthase compare
PS417_01855 -0.9 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_06600 -0.9 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01435 -0.9 -1.0 hypothetical protein compare
PS417_00405 -0.9 -3.8 DNA polymerase I compare
PS417_13895 -0.9 -2.9 chemotaxis protein CheB compare
PS417_01630 -0.9 -1.6 hypothetical protein compare
PS417_02555 -0.8 -5.2 exoribonuclease R compare
PS417_04365 -0.8 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09720 -0.8 -3.2 methyltransferase compare
PS417_01635 -0.8 -3.6 nitrogen regulation protein NR(I) compare
PS417_19065 -0.8 -0.8 monooxygenase compare
PS417_13010 -0.8 -1.4 alpha/beta hydrolase compare
PS417_28085 -0.8 -4.8 phosphate-binding protein compare
PS417_18310 -0.8 -1.1 hypothetical protein compare
PS417_24585 -0.8 -4.8 AMP nucleosidase compare
PS417_06200 -0.8 -3.8 protein-PII uridylyltransferase compare
PS417_15865 -0.8 -2.5 hypothetical protein compare
PS417_24745 -0.8 -2.1 gamma-glutamyl phosphate reductase compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_23015 -0.8 -1.8 NGG1p interacting factor 3 protein, NIF3 compare
PS417_07845 -0.8 -1.7 transcriptional regulator compare
PS417_16005 -0.8 -2.0 ATPase compare
PS417_23775 -0.8 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_13950 -0.8 -2.4 LuxR family transcriptional regulator compare
PS417_08740 -0.8 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_04390 -0.8 -2.2 toluene tolerance protein compare
PS417_26805 -0.8 -0.8 cell division protein FtsE compare
PS417_28075 -0.8 -2.9 phosphate ABC transporter permease compare
PS417_26400 -0.8 -2.4 metal-dependent hydrolase compare
PS417_04410 -0.8 -1.5 hypothetical protein compare
PS417_26815 -0.8 -1.7 peptidase M16 compare
PS417_22680 -0.8 -2.1 chemotaxis protein CheY compare
PS417_16160 -0.7 -1.8 ABC transporter substrate-binding protein compare
PS417_01580 -0.7 -1.0 imidazole glycerol phosphate synthase compare
PS417_24155 -0.7 -1.2 ATP-binding protein compare
PS417_11570 -0.7 -2.2 ABC transporter permease compare
PS417_14280 -0.7 -1.8 hypothetical protein compare
PS417_17125 -0.7 -2.1 transcriptional regulator compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_05120 -0.7 -1.6 RNA polymerase subunit sigma-24 compare
PS417_23805 -0.7 -2.1 acetolactate synthase 3 regulatory subunit compare
PS417_15090 -0.7 -0.7 hypothetical protein compare
PS417_13145 -0.7 -1.0 50S ribosomal protein L21 compare
PS417_21655 -0.7 -0.7 aspartate kinase compare
PS417_21210 -0.7 -1.2 amidotransferase compare
PS417_00550 -0.7 -0.7 hypothetical protein compare
PS417_23080 -0.7 -2.1 sugar ABC transporter ATPase compare
PS417_19600 -0.7 -0.5 exonuclease compare
PS417_10095 -0.7 -1.3 hypothetical protein compare
PS417_03155 -0.7 -1.5 transcriptional regulator compare
PS417_01915 -0.7 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23390 -0.7 -2.6 ubiquinol oxidase subunit II compare
PS417_20880 -0.7 -1.1 GntR family transcriptional regulator compare
PS417_18585 -0.7 -2.9 3-isopropylmalate dehydrogenase compare
PS417_15295 -0.7 -3.2 Fis family transcriptional regulator compare
PS417_09705 -0.7 -1.9 hypothetical protein compare
PS417_20125 -0.7 -2.6 phosphoribosylglycinamide formyltransferase compare
PS417_02360 -0.7 -2.0 nitrate reductase compare
PS417_12910 -0.7 -1.7 alanine racemase compare
PS417_05010 -0.7 -1.5 IclR family transcriptional regulator compare
PS417_07865 -0.7 -1.4 hypothetical protein compare
PS417_12795 -0.7 -3.4 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_19565 -0.6 -3.5 TetR family transcriptional regulator compare
PS417_09440 -0.6 -0.7 MerR family transcriptional regulator compare
PS417_22895 -0.6 -2.6 tyrosine recombinase XerD compare
PS417_23900 -0.6 -3.0 poly(A) polymerase compare
PS417_07640 -0.6 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_28225 -0.6 -0.9 hypothetical protein compare
PS417_00115 -0.6 -3.0 quinone oxidoreductase compare
PS417_09865 -0.6 -0.8 hypothetical protein compare
PS417_15805 -0.6 -1.1 transporter compare
PS417_25905 -0.6 -1.3 AsnC family transcriptional regulator compare
PS417_22025 -0.6 -2.2 LysR family transcriptional regulator compare
PS417_15030 -0.6 -0.8 short-chain dehydrogenase compare
PS417_15910 -0.6 -1.2 lysine transporter LysE compare
PS417_18260 -0.6 -2.2 TetR family transcriptional regulator compare
PS417_05100 -0.6 -1.3 RNA polymerase sigma factor compare
PS417_11925 -0.6 -0.9 hypothetical protein compare
PS417_26730 -0.6 -0.5 pyrroline-5-carboxylate reductase compare
PS417_16950 -0.6 -1.4 fimbrial protein compare
PS417_07985 -0.6 -1.0 AbrB family transcriptional regulator compare
PS417_26040 -0.6 -2.0 malate synthase compare
PS417_10040 -0.6 -0.7 MFS transporter compare
PS417_15105 -0.6 -2.3 membrane protein compare
PS417_00185 -0.6 -1.8 tryptophan synthase subunit beta compare
PS417_01950 -0.6 -1.9 malate dehydrogenase compare
PS417_17930 -0.6 -1.2 aldehyde dehydrogenase compare
PS417_15640 -0.6 -2.2 DNA methylase compare
PS417_19370 -0.6 -1.6 citrate transporter compare
PS417_09605 -0.6 -1.1 glycosyl transferase compare
PS417_01575 -0.6 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00900 -0.6 -1.1 4-aminobutyrate aminotransferase compare
PS417_13730 -0.6 -1.3 hypothetical protein compare
PS417_18025 -0.6 -2.1 cytochrome C compare
PS417_07420 -0.6 -1.3 restriction endonuclease compare
PS417_10870 -0.6 -1.5 GABA permease compare
PS417_27315 -0.6 -0.9 hypothetical protein compare
PS417_28285 -0.6 -1.5 hypothetical protein compare
PS417_04440 -0.6 -0.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_11075 -0.6 -1.6 hydroxypyruvate isomerase compare
PS417_15180 -0.6 -2.6 acyl dehydratase compare
PS417_04415 -0.6 -2.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26340 -0.6 -2.3 betaine-aldehyde dehydrogenase compare
PS417_04420 -0.6 -4.0 histidinol dehydrogenase compare
PS417_16490 -0.6 -0.9 cell division protein FtsK compare
PS417_09695 -0.6 -1.1 hydrolase compare
PS417_20915 -0.6 -1.8 hypothetical protein compare
PS417_15085 -0.6 -1.7 ATPase AAA compare
PS417_02005 -0.6 -3.7 glutamate synthase compare
PS417_14835 -0.6 -3.5 amidase compare
PS417_25705 -0.6 -1.5 lipoate--protein ligase compare
PS417_26890 -0.6 -2.9 dihydroxy-acid dehydratase compare
PS417_16000 -0.6 -1.2 chemotaxis protein CheY compare
PS417_27235 -0.5 -1.6 ribonucleotide reductase compare
PS417_24785 -0.5 -1.0 nucleoside-diphosphate sugar epimerase compare
PS417_09930 -0.5 -1.1 hypothetical protein compare
PS417_24580 -0.5 -1.4 pseudouridine synthase compare
PS417_18965 -0.5 -1.5 dienelactone hydrolase compare
PS417_18595 -0.5 -1.5 3-isopropylmalate dehydratase compare
PS417_26835 -0.5 -0.7 3-mercaptopyruvate sulfurtransferase compare
PS417_08130 -0.5 -0.9 aspartate aminotransferase compare
PS417_05900 -0.5 -0.8 TetR family transcriptional regulator compare
PS417_07870 -0.5 -0.7 hypothetical protein compare
PS417_26390 -0.5 -1.0 acyltransferase compare
PS417_12535 -0.5 -1.3 nitrilase compare
PS417_05865 -0.5 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments