Experiment set19IT073 for Pseudomonas putida KT2440

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Growth at pH8 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0787 -7.2 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1079 -7.0 -4.8 Ornithine carbamoyltransferase compare
PP_0292 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1985 -6.5 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.4 -7.6 3-isopropylmalate dehydrogenase compare
PP_0967 -6.1 -11.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1986 -5.9 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_2371 -5.8 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2370 -5.7 -4.0 conserved protein of unknown function compare
PP_0290 -5.4 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.4 -13.8 Ketol-acid reductoisomerase compare
PP_0083 -5.3 -6.3 tryptophan synthase beta chain compare
PP_1421 -5.2 -9.7 putative Sensor histidine kinase TctE conserved
PP_0291 -5.2 -5.5 conserved protein of unknown function compare
PP_0417 -5.0 -16.7 Anthranilate synthase component 1 compare
PP_0966 -4.9 -11.1 Histidinol dehydrogenase compare
PP_4680 -4.9 -13.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.8 -12.9 Argininosuccinate synthase compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_4679 -4.7 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -4.5 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0735 -4.4 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_2499 -4.3 -1.7 conserved protein of unknown function compare
PP_2168 -4.3 -8.7 Transaldolase compare
PP_5097 -4.3 -10.0 homoserine O-acetyltransferase compare
PP_5098 -4.3 -6.8 methionine biosynthesis protein MetW compare
PP_4909 -4.2 -8.0 phosphoserine phosphatase compare
PP_0959 -4.1 -3.2 phospholipid ABC transporter compare
PP_5008 -4.1 -1.7 Poly granule-associated protein compare
PP_2327 -4.0 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5185 -3.9 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2001 -3.9 -6.8 O-succinylhomoserine sulfhydrylase compare
PP_2328 -3.9 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_1654 -3.8 -3.7 cysteine synthase B compare
PP_0184 -3.8 -7.3 Argininosuccinate lyase compare
PP_3511 -3.8 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_1025 -3.7 -9.3 2-isopropylmalate synthase compare
PP_1231 -3.7 -4.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -3.7 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -3.7 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4782 -3.6 -4.2 Phosphomethylpyrimidine kinase compare
PP_5155 -3.6 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -3.5 -6.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0164 -3.5 -7.5 conserved protein of unknown function compare
PP_1733 -3.3 -4.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_2720 -3.3 -1.6 conserved protein of unknown function compare
PP_0422 -3.3 -4.8 Indole-3-glycerol phosphate synthase compare
PP_1418 -3.3 -6.2 putative Tricarboxylate transport protein TctC conserved
PP_1237 -3.3 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5303 -3.3 -3.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5014 -3.3 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4890 -3.2 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4994 -3.2 -4.0 conserved protein of unknown function compare
PP_5128 -3.1 -5.3 Dihydroxy-acid dehydratase compare
PP_0293 -3.1 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4874 -3.0 -1.7 50S ribosomal protein L9 compare
PP_2088 -3.0 -2.9 RNA polymerase sigma factor SigX compare
PP_1198 -3.0 -3.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2681 -2.9 -2.2 coenzyme PQQ synthesis protein D compare
PP_4902 -2.9 -3.4 Oligoribonuclease compare
PP_1420 -2.9 -4.7 Transcriptional regulatory protein tctD conserved
PP_5015 -2.9 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2402 -2.8 -3.1 putative Sensor histidine kinase compare
PP_2137 -2.8 -3.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_4196 -2.8 -2.7 conserved exported protein of unknown function compare
PP_4804 -2.8 -4.2 RlpA-like lipoprotein compare
PP_1410 -2.8 -1.1 conserved protein of unknown function compare
PP_0421 -2.7 -5.0 Anthranilate phosphoribosyltransferase compare
PP_4364 -2.6 -2.4 putative Anti-sigma F factor antagonist compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_0406 -2.4 -3.2 Nucleotidyltransferase family protein compare
PP_1528 -2.4 -1.3 conserved protein of unknown function compare
PP_3971 -2.4 -1.8 conserved protein of unknown function compare
PP_1678 -2.4 -2.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1898 -2.4 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_5289 -2.4 -2.5 Acetylglutamate kinase compare
PP_4785 -2.3 -4.8 conserved exported protein of unknown function compare
PP_3637 -2.2 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2976 -2.2 -1.6 putative transposase compare
PP_5537 -2.2 -2.4 conserved membrane protein of unknown function compare
PP_5217 -2.2 -6.2 Polyphosphate kinase compare
PP_4837 -2.2 -1.6 conserved protein of unknown function compare
PP_4247 -2.2 -1.7 Exonuclease compare
PP_4379 -2.2 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0420 -2.1 -4.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4917 -2.1 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3580 -2.1 -2.5 conserved protein of unknown function compare
PP_4895 -2.0 -1.4 tRNA dimethylallyltransferase compare
PP_0393 -2.0 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2378 -2.0 -2.5 Fe/S biogenesis protein NfuA compare
PP_1912 -2.0 -3.5 Phosphate acyltransferase compare
PP_4695 -1.9 -6.2 Sensory box histidine kinase compare
PP_4480 -1.9 -5.5 arginine N-succinyltransferase, subunit alpha compare
PP_4642 -1.9 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_1303 -1.9 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_4131 -1.9 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_3484 -1.9 -2.9 Response regulator receiver protein compare
PP_3508 -1.8 -2.2 Protein CobW compare
PP_3241 -1.8 -1.4 conserved exported protein of unknown function compare
PP_5201 -1.8 -2.3 conserved protein of unknown function, UPF0149 family compare
PP_1233 -1.7 -2.5 sulfurtransferase compare
PP_4227 -1.7 -1.3 conserved protein of unknown function compare
PP_4880 -1.7 -7.8 exoribonuclease R compare
PP_0368 -1.7 -5.3 putative Acyl-CoA dehydrogenase compare
PP_1215 -1.7 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1128 -1.7 -3.3 OmpA family protein compare
PP_3035 -1.7 -2.4 conserved protein of unknown function compare
PP_2322 -1.6 -2.8 Major outer membrane lipoprotein compare
PP_0848 -1.6 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0673 -1.6 -1.5 conserved protein of unknown function compare
PP_4045 -1.6 -2.8 conserved protein of unknown function compare
PP_3806 -1.6 -1.9 Hydrolase, isochorismatase family compare
PP_2087 -1.6 -1.8 CmpX protein compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4693 -1.6 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_4555 -1.5 -2.1 conserved protein of unknown function compare
PP_t12 -1.5 -1.0 tRNA-Thr compare
PP_0307 -1.5 -2.2 conserved exported protein of unknown function compare
PP_t29 -1.5 -1.6 tRNA-Ala compare
PP_2302 -1.5 -3.7 DNA-binding, ATP-dependent protease compare
PP_5114 -1.5 -1.4 putative adenine methyltransferase compare
PP_2568 -1.5 -1.2 Ring-cleaving dioxygenase compare
PP_0628 -1.5 -1.5 conserved protein of unknown function compare
PP_1637 -1.5 -3.0 Transcriptional regulator, LysR family compare
PP_5717 -1.5 -1.6 conserved protein of unknown function compare
PP_1862 -1.4 -2.1 conserved membrane protein of unknown function compare
PP_2032 -1.4 -3.8 putative ATPase compare
PP_4964 -1.4 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1770 -1.4 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4793 -1.4 -1.2 conserved protein of unknown function compare
PP_0356 -1.4 -3.1 malate synthase G compare
PP_5028 -1.4 -2.4 proline iminopeptidase compare
PP_0685 -1.4 -0.9 conserved protein of unknown function compare
PP_5546 -1.4 -1.9 conserved protein of unknown function compare
PP_4362 -1.4 -1.8 conserved protein of unknown function compare
PP_1096 -1.4 -1.0 putative electron transport complex protein compare
PP_1322 -1.3 -1.5 putative Lipoprotein compare
PP_5448 -1.3 -1.9 conserved protein of unknown function compare
PP_5714 -1.3 -2.7 conserved protein of unknown function compare
PP_4560 -1.3 -2.1 putative Ribonuclease BN compare
PP_0065 -1.3 -2.3 NAD-binding component of TrK potassium transporter compare
PP_4109 -1.3 -1.0 conserved protein of unknown function compare
PP_0839 -1.3 -2.1 tRNA Cm32/Um32 methyltransferase compare
PP_1503 -1.3 -1.2 conserved protein of unknown function compare
PP_5104 -1.3 -4.4 thiazole synthase compare
PP_1675 -1.3 -3.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4977 -1.3 -4.5 5,10-methylenetetrahydrofolate reductase compare
PP_1309 -1.3 -3.1 conserved exported protein of unknown function compare
PP_4121 -1.3 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1774 -1.3 -1.6 conserved exported protein of unknown function compare
PP_2416 -1.3 -1.7 putative Iron ABC transporter, ATP-binding protein compare
PP_4827 -1.3 -4.7 Precorrin-2 C(20)-methyltransferase compare
PP_0725 -1.2 -2.2 conserved hypothetical TPR repeat protein compare
PP_5017 -1.2 -0.9 Sec-independent protein translocase protein TatB compare
PP_4699 -1.2 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2107 -1.2 -1.6 conserved protein of unknown function compare
PP_3946 -1.2 -1.0 HTH-type transcriptional repressor NicR compare
PP_2794 -1.2 -1.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3662 -1.2 -2.7 conserved protein of unknown function compare
PP_2217 -1.2 -1.2 enoyl-CoA hydratase compare
PP_4609 -1.2 -1.7 conserved membrane protein of unknown function compare
PP_4099 -1.2 -10.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5582 -1.2 -1.0 conserved protein of unknown function compare
PP_1217 -1.2 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4613 -1.2 -4.6 outer membrane ferric citrate porin compare
PP_2307 -1.1 -1.1 conserved protein of unknown function compare
PP_5451 -1.1 -1.6 protein of unknown function compare
PP_0874 -1.1 -0.7 conserved protein of unknown function compare
PP_5639 -1.1 -4.5 conserved exported protein of unknown function compare
PP_4666 -1.1 -2.7 3-hydroxyisobutyrate dehydrogenase compare
PP_4546 -1.1 -2.5 ATP-dependent helicase HrpA compare
PP_5058 -1.1 -2.1 Carboxy-terminal-processing protease compare
PP_t49 -1.1 -3.4 tRNA-Met compare
PP_5095 -1.1 -0.9 pyrroline-5-carboxylate reductase compare
PP_5310 -1.1 -2.6 junction-specific ATP-dependent DNA helicase compare
PP_0048 -1.1 -0.9 conserved protein of unknown function compare
PP_1304 -1.1 -3.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4120 -1.1 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_0833 -1.1 -1.3 queuine tRNA-ribosyltransferase compare
PP_0801 -1.1 -0.9 conserved exported protein of unknown function compare
PP_2136 -1.1 -2.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0960 -1.1 -2.7 phospholipid ABC transporter binding protein compare
PP_0593 -1.1 -0.7 putative ribosome-binding factor compare
PP_4129 -1.1 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1026 -1.1 -2.0 Peptidase, M23/M37 family compare
PP_4502 -1.1 -3.1 putative enzyme compare
PP_5267 -1.1 -1.3 putative cytochrome c5 compare
PP_0855 -1.1 -1.7 conserved protein of unknown function compare
PP_1656 -1.1 -3.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_0668 -1.1 -1.9 putative Transmembrane sensor compare
PP_1650 -1.1 -8.5 Sensor protein GacS compare
PP_5035 -1.0 -2.1 Histidine utilization repressor compare
PP_4517 -1.0 -1.3 conserved protein of unknown function compare
PP_1489 -1.0 -2.2 CheW domain protein compare
PP_1824 -1.0 -1.0 Smr domain protein compare
PP_3837 -1.0 -2.3 inner membrane protein of unknown function compare
PP_2388 -1.0 -1.8 Transporter, LysE family compare
PP_4797 -1.0 -1.6 conserved protein of unknown function compare
PP_1676 -1.0 -2.8 subunit of adenosylcobinamide-phosphate synthase beta component compare


Specific Phenotypes

For 2 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms