Experiment set19IT072 for Pseudomonas putida KT2440

Compare to:

Growth at pH7 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.0 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -6.0 -4.1 tryptophan synthase alpha chain compare
PP_5098 -5.8 -9.8 methionine biosynthesis protein MetW compare
PP_4679 -5.8 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -5.8 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_2371 -5.6 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1988 -5.5 -9.3 3-isopropylmalate dehydrogenase compare
PP_4678 -5.4 -15.9 Ketol-acid reductoisomerase compare
PP_5289 -5.3 -5.1 Acetylglutamate kinase compare
PP_0967 -5.3 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -5.1 -9.7 Dihydroxy-acid dehydratase compare
PP_5097 -5.0 -13.3 homoserine O-acetyltransferase compare
PP_2327 -5.0 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -4.9 -3.4 Nitrogen regulation protein NR(I) compare
PP_2001 -4.9 -8.8 O-succinylhomoserine sulfhydrylase compare
PP_0289 -4.9 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1025 -4.6 -13.7 2-isopropylmalate synthase compare
PP_1995 -4.6 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -4.5 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -4.4 -9.2 tryptophan synthase beta chain compare
PP_1421 -4.3 -7.6 putative Sensor histidine kinase TctE conserved
PP_1418 -4.3 -10.0 putative Tricarboxylate transport protein TctC conserved
PP_1079 -4.2 -5.7 Ornithine carbamoyltransferase compare
PP_4909 -4.2 -8.9 phosphoserine phosphatase compare
PP_1420 -4.2 -7.1 Transcriptional regulatory protein tctD conserved
PP_0965 -4.2 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -4.1 -8.7 Histidinol dehydrogenase compare
PP_1088 -4.1 -11.7 Argininosuccinate synthase compare
PP_3999 -3.8 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -3.8 -7.5 Argininosuccinate lyase compare
PP_4680 -3.8 -11.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.8 -13.0 Anthranilate synthase component 1 compare
PP_3511 -3.7 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_5014 -3.7 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_5155 -3.6 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0292 -3.5 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0422 -3.5 -3.9 Indole-3-glycerol phosphate synthase compare
PP_4902 -3.5 -4.0 Oligoribonuclease compare
PP_0420 -3.4 -7.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -3.3 -6.2 Anthranilate phosphoribosyltransferase compare
PP_1654 -3.2 -3.8 cysteine synthase B compare
PP_1898 -3.2 -3.8 MotA/TolQ/ExbB proton channel family protein compare
PP_5015 -3.2 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4804 -3.0 -4.9 RlpA-like lipoprotein compare
PP_2370 -2.9 -3.4 conserved protein of unknown function compare
PP_4785 -2.8 -5.6 conserved exported protein of unknown function compare
PP_4829 -2.8 -2.4 putative precorrin-3B synthase compare
PP_0164 -2.7 -5.9 conserved protein of unknown function compare
PP_4699 -2.7 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_1231 -2.6 -4.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -2.5 -1.5 pyrroline-5-carboxylate reductase compare
PP_4890 -2.5 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_4364 -2.4 -3.4 putative Anti-sigma F factor antagonist compare
PP_2168 -2.4 -6.4 Transaldolase compare
PP_2402 -2.3 -3.0 putative Sensor histidine kinase compare
PP_0959 -2.3 -2.5 phospholipid ABC transporter compare
PP_5090 -2.3 -2.1 putative cell division protein compare
PP_2088 -2.2 -3.1 RNA polymerase sigma factor SigX compare
PP_4126 -2.2 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_4828 -2.2 -1.7 Precorrin-8X methylmutase compare
PP_0406 -2.2 -3.4 Nucleotidyltransferase family protein compare
PP_4824 -2.2 -6.4 Sensor histidine kinase/response regulator compare
PP_2328 -2.1 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_1783 -2.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_0393 -2.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0291 -2.1 -2.9 conserved protein of unknown function compare
PP_4977 -2.1 -6.7 5,10-methylenetetrahydrofolate reductase compare
PP_4695 -2.1 -6.5 Sensory box histidine kinase compare
PP_5104 -2.0 -3.6 thiazole synthase compare
PP_1419 -2.0 -5.8 tricarboxylate-specific outer membrane porin conserved
PP_1986 -2.0 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_0787 -2.0 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3505 -2.0 -1.8 conserved protein of unknown function compare
PP_4964 -2.0 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_2137 -2.0 -2.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_2375 -2.0 -9.1 cobalamin-dependent methionine synthase compare
PP_1826 -2.0 -2.2 Hydrolase, isochorismatase family compare
PP_1198 -2.0 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4517 -1.9 -2.3 conserved protein of unknown function compare
PP_5303 -1.9 -2.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5216 -1.9 -1.3 exopolyphosphatase compare
PP_4129 -1.9 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5225 -1.9 -1.5 frataxin compare
PP_4994 -1.8 -4.0 conserved protein of unknown function compare
PP_5217 -1.8 -6.5 Polyphosphate kinase compare
PP_0356 -1.8 -4.1 malate synthase G compare
PP_3265 -1.8 -2.7 putative phosphohydrolase of unknown function compare
PP_5274 -1.8 -1.9 conserved protein of unknown function compare
PP_2378 -1.7 -2.2 Fe/S biogenesis protein NfuA compare
PP_1303 -1.7 -4.9 Sulfate adenylyltransferase subunit 2 compare
PP_2136 -1.7 -3.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5027 -1.7 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5093 -1.7 -1.3 twitching motility protein compare
PP_4693 -1.7 -4.0 RNA polymerase-binding transcription factor DksA compare
PP_0888 -1.6 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_4782 -1.6 -3.3 Phosphomethylpyrimidine kinase compare
PP_0001 -1.5 -0.9 probable chromosome-partitioning protein compare
PP_5203 -1.5 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_4131 -1.5 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_3880 -1.5 -1.6 conserved exported protein of unknown function compare
PP_4793 -1.5 -2.0 conserved protein of unknown function compare
PP_4124 -1.5 -4.3 NADH-quinone oxidoreductase subunit G compare
PP_1304 -1.5 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3662 -1.4 -4.9 conserved protein of unknown function compare
PP_1912 -1.4 -3.2 Phosphate acyltransferase compare
PP_1656 -1.4 -5.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_1001 -1.4 -2.4 arginine deiminase compare
PP_1111 -1.4 -4.3 putative Synthetase compare
PP_4581 -1.3 -2.4 putative amidotransferase compare
PP_1664 -1.3 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_3258 -1.3 -2.6 conserved protein of unknown function compare
PP_2510 -1.3 -1.7 conserved protein of unknown function compare
PP_0962 -1.3 -2.2 toluene-tolerance protein compare
PP_2718 -1.3 -1.4 arsenic resistance transcriptional regulator compare
PP_4480 -1.3 -4.9 arginine N-succinyltransferase, subunit alpha compare
PP_1110 -1.3 -1.8 serine acetyltransferase compare
PP_2145 -1.3 -2.6 beta-N-acetylglucosaminidase compare
PP_4099 -1.3 -12.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1673 -1.3 -3.4 cobyrinate a,c-diamide synthase compare
PP_5114 -1.3 -1.2 putative adenine methyltransferase compare
PP_2868 -1.2 -3.9 Transcriptional regulator, Cro/CI family compare
PP_0147 -1.2 -6.3 Citrate transporter conserved
PP_1416 -1.2 -3.9 putative Tricarboxylate transport protein TctA compare
PP_4556 -1.2 -2.0 conserved protein of unknown function compare
PP_1681 -1.2 -4.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4930 -1.2 -3.3 putative small multidrug resistance protein compare
PP_2337 -1.2 -1.5 aconitate isomerase compare
PP_1233 -1.2 -3.2 sulfurtransferase compare
PP_1903 -1.2 -3.2 putative phosphotyrosine-protein phosphatase compare
PP_1987 -1.2 -1.8 Methlytransferase, UbiE/COQ5 family compare
PP_1650 -1.2 -8.5 Sensor protein GacS compare
PP_3946 -1.1 -1.0 HTH-type transcriptional repressor NicR compare
PP_5639 -1.1 -4.5 conserved exported protein of unknown function compare
PP_0725 -1.1 -2.9 conserved hypothetical TPR repeat protein compare
PP_3590 -1.1 -3.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0610 -1.1 -2.8 conserved exported protein of unknown function compare
PP_1677 -1.1 -2.7 Adenosyl-cobyric acid synthase compare
PP_0368 -1.1 -5.2 putative Acyl-CoA dehydrogenase compare
PP_5008 -1.1 -1.1 Poly granule-associated protein compare
PP_1770 -1.1 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1655 -1.1 -1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1237 -1.1 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1353 -1.1 -1.3 conserved membrane protein of unknown function compare
PP_4895 -1.1 -1.9 tRNA dimethylallyltransferase compare
PP_0683 -1.1 -1.4 conserved protein of unknown function compare
PP_5000 -1.0 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_4273 -1.0 -1.0 Transcriptional regulator, MerR family compare
PP_2226 -1.0 -3.1 putative K(+)/H(+) antiporter subunit F compare
PP_4937 -1.0 -1.8 toluene tolerance protein compare
PP_5571 -1.0 -1.1 conserved protein of unknown function compare
PP_5310 -1.0 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_0961 -1.0 -2.9 toluene tolerance protein compare
PP_0547 -1.0 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3145 -1.0 -4.1 conserved protein of unknown function compare
PP_0846 -1.0 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_4593 -1.0 -1.3 conserved protein of unknown function compare
PP_1679 -1.0 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1054 -1.0 -0.9 Type II secretion pathway protein XcpZ compare
PP_0949 -1.0 -3.0 putative ATP-binding protein UPF0042 compare
PP_3824 -1.0 -1.3 conserved exported protein of unknown function compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_1348 -1.0 -4.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0138 -1.0 -4.3 conserved membrane protein of unknown function compare
PP_5230 -0.9 -1.4 Tyrosine recombinase XerC compare
PP_5100 -0.9 -2.1 dITP/XTP pyrophosphatase compare
PP_0150 -0.9 -1.6 conserved exported protein of unknown function compare
PP_4199 -0.9 -0.9 putative Lipoprotein compare
PP_2878 -0.9 -0.9 conserved protein of unknown function compare
PP_2163 -0.9 -3.0 VacJ lipoprotein compare
PP_4529 -0.9 -1.7 conserved protein of unknown function compare
PP_0566 -0.9 -0.9 translation-related factor compare
PP_4910 -0.9 -1.1 conserved protein of unknown function compare
PP_1426 -0.9 -5.0 L-aspartate oxidase compare
PP_4860 -0.9 -5.1 putative Mannose-6-phosphate isomerase compare
PP_1468 -0.9 -1.2 Tyrosine recombinase XerD compare
PP_3508 -0.9 -1.8 Protein CobW compare
PP_0937 -0.9 -2.4 endoribonuclease G (RNAse G) compare
PP_3064 -0.9 -1.8 Phage tail protein compare
PP_0362 -0.9 -5.5 Biotin synthase compare
PP_5628 -0.9 -2.1 conserved protein of unknown function compare
PP_1346 -0.9 -3.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1417 -0.9 -1.9 putative Tricarboxylate transport protein TctB compare
PP_4387 -0.9 -1.7 conserved exported protein of unknown function compare
PP_3603 -0.9 -3.3 Transcriptional regulator, GntR family compare
PP_1733 -0.9 -1.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1675 -0.9 -3.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4156 -0.9 -1.4 Transcriptional regulator, LysR family compare
PP_4826 -0.9 -2.7 Precorrin-3B C17-methyltransferase compare
PP_1109 -0.9 -5.3 Transcriptional regulator, GntR family compare
PP_2661 -0.9 -1.7 conserved protein of unknown function compare
PP_4827 -0.9 -3.9 Precorrin-2 C(20)-methyltransferase compare
PP_5227 -0.9 -3.3 diaminopimelate decarboxylase compare
PP_1734 -0.8 -1.9 Probable septum site-determining protein MinC compare
PP_2857 -0.8 -1.5 conserved exported protein of unknown function compare
PP_4546 -0.8 -1.8 ATP-dependent helicase HrpA compare
PP_3002 -0.8 -1.3 shikimate dehydrogenase-related enzyme compare
PP_5582 -0.8 -0.9 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms