Experiment set19IT072 for Pseudomonas putida KT2440

Compare to:

Growth at pH7 and carbon source Trisodium citrate dihydrate

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +1.6 8.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_1824 +1.3 1.9 Smr domain protein compare
PP_3730 +1.2 3.0 Transcriptional regulatory protein AruR compare
PP_4227 +1.2 2.0 conserved protein of unknown function compare
PP_1215 +1.1 1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_2847 +1.1 1.6 Urease accessory protein UreJ compare
PP_5338 +1.1 3.7 aspartate ammonia-lyase compare
PP_2318 +1.1 3.3 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_4354 +1.0 4.4 flagellar export apparatus subunit compare
PP_0905 +1.0 2.6 conserved exported protein of unknown function compare
PP_5569 +1.0 2.4 protein of unknown function of phage origin compare
PP_3460 +1.0 3.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1142 +1.0 1.3 conserved protein of unknown function compare
PP_0630 +1.0 1.4 DNA gyrase inhibitor YacG compare
PP_4874 +1.0 1.4 50S ribosomal protein L9 compare
PP_4337 +1.0 3.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1317 +0.9 3.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5689 +0.9 3.7 conserved protein of unknown function compare
PP_4814 +0.9 3.1 ATP-dependent protease La domain protein compare
PP_2107 +0.9 1.0 conserved protein of unknown function compare
PP_3551 +0.9 1.6 DNA-binding response regulator, LuxR family compare
PP_0804 +0.9 6.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_5674 +0.9 1.8 conserved protein of unknown function compare
PP_2046 +0.9 2.5 Transcriptional regulator, LysR family compare
PP_3098 +0.9 1.2 conserved protein of unknown function compare
PP_1176 +0.9 1.4 conserved protein of unknown function compare
PP_1428 +0.9 1.3 Sigma factor AlgU negative regulatory protein compare
PP_1362 +0.9 2.5 pyruvate kinase II compare
PP_5706 +0.8 2.1 Sec translocation complex - SecG subunit compare
PP_5328 +0.8 1.4 putative phosphate transport system permease protein compare
PP_2474 +0.8 1.5 Glutathione S-transferase family protein compare
PP_5748 +0.8 1.2 cytochrome c heme lyase subunit compare
PP_5140 +0.8 1.7 Transcriptional regulator, MerR family compare
PP_5654 +0.8 1.1 putative phosphotriesterase compare
PP_5051 +0.8 1.8 conserved protein of unknown function compare
PP_0948 +0.8 1.5 Phosphocarrier protein HPr compare
PP_5658 +0.8 1.6 protein of unknown function compare
PP_0574 +0.8 5.6 DNA-binding response regulator, LuxR family compare
PP_0153 +0.8 1.2 hypothetical protein compare
PP_2907 +0.8 1.5 DNA-binding response regulator compare
PP_3773 +0.8 1.9 conserved protein of unknown function compare
PP_1208 +0.8 1.4 conserved protein of unknown function, SlyX family compare
PP_4271 +0.8 1.0 conserved protein of unknown function compare
PP_0261 +0.8 2.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5486 +0.8 1.1 conserved protein of unknown function compare
PP_2675 +0.8 2.6 Cytochrome c-type protein compare
PP_0770 +0.8 2.8 PemI-like protein compare
PP_4159 +0.7 1.9 Potassium-transporting ATPase C chain compare
PP_4385 +0.7 3.1 flagellar basal-body rod protein FlgG compare
PP_1087 +0.7 3.5 Outer membrane protein, OmpA family compare
PP_4057 +0.7 2.4 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_1325 +0.7 4.0 putative lipoprotein compare
PP_1635 +0.7 2.6 DNA-binding response regulator compare
PP_0512 +0.7 1.0 hypothetical protein compare
PP_4355 +0.7 1.8 flagellar export apparatus subunit compare
PP_2653 +0.7 1.3 Transcriptional regulator, Cro/CI family compare
PP_4379 +0.7 1.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2899 +0.7 1.3 conserved exported protein of unknown function compare
PP_3245 +0.7 1.3 conserved protein of unknown function compare
PP_1864 +0.7 2.1 conserved protein of unknown function compare
PP_4102 +0.7 1.9 conserved protein of unknown function compare
PP_0191 +0.7 1.3 Transcriptional regulatory protein AlgQ compare
PP_5327 +0.7 2.4 putative phosphate ABC transporter, permease subunit compare
PP_4375 +0.7 3.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_3519 +0.7 0.9 putative Lipoprotein compare
PP_2442 +0.7 1.2 conserved protein of unknown function, DUF480 family compare
PP_2814 +0.7 2.6 conserved protein of unknown function compare
PP_5456 +0.7 1.0 conserved protein of unknown function compare
PP_5267 +0.7 1.5 putative cytochrome c5 compare
PP_1363 +0.7 3.1 conserved protein of unknown function compare
PP_0805 +0.7 4.3 Outer membrane efflux protein compare
PP_5359 +0.7 1.4 CobW/P47K family protein compare
PP_2403 +0.7 0.5 Chemotaxis protein CheY compare
PP_3874 +0.7 1.2 conserved protein of unknown function compare
PP_4353 +0.7 2.5 Flagellar biosynthetic protein fliR compare
PP_4386 +0.7 3.7 flagellar basal-body rod protein FlgF compare
PP_4706 +0.7 3.0 conserved protein of unknown function compare
PP_0957 +0.7 1.1 D-arabinose 5-phosphate isomerase compare
PP_2898 +0.7 1.8 conserved exported protein of unknown function compare
PP_1489 +0.6 1.7 CheW domain protein compare
PP_1269 +0.6 0.9 Universal stress protein family compare
PP_4905 +0.6 3.1 Flagellar motor rotation protein compare
PP_4383 +0.6 2.6 Flagellar P-ring protein compare
PP_2291 +0.6 2.0 conserved protein of unknown function compare
PP_4942 +0.6 1.1 conserved protein of unknown function compare
PP_1397 +0.6 3.1 conserved protein of unknown function compare
PP_1892 +0.6 2.1 conserved protein of unknown function compare
PP_1124 +0.6 1.8 conserved membrane protein of unknown function compare
PP_0806 +0.6 5.7 putative Surface adhesion protein compare
PP_1812 +0.6 1.4 conserved protein of unknown function compare
PP_0275 +0.6 2.3 conserved protein of unknown function compare
PP_4663 +0.6 2.7 conserved transmembrane protein of unknown function compare
PP_1556 +0.6 1.6 conserved protein of unknown function compare
PP_5073 +0.6 1.3 conserved exported protein of unknown function compare
PP_4172 +0.6 2.3 conserved exported protein of unknown function compare
PP_5167 +0.6 1.9 conserved hypothetical protein compare
PP_2724 +0.6 2.5 conserved protein of unknown function compare
PP_4358 +0.6 3.1 flagellar synthesis, switching and energizing component compare
PP_4361 +0.6 3.8 Flagellar hook-length control protein FliK compare
PP_4904 +0.6 3.8 Flagellar motor rotation protein compare
PP_4365 +0.6 2.6 Flagellar protein FliJ compare
PP_1633 +0.6 1.7 conserved exported protein of unknown function compare
PP_5170 +0.6 1.6 sulfate ABC transporter, inner membrane subunit CysT compare
PP_3749 +0.6 2.3 conserved protein of unknown function compare
PP_3018 +0.6 3.2 conserved protein of unknown function compare
PP_4381 +0.6 4.4 Flagellar hook-associated protein FlgK compare
PP_4373 +0.6 4.5 Transcriptional regulator FleQ compare
PP_4616 +0.6 2.7 conserved protein of unknown function compare
PP_5625 +0.6 1.9 conserved protein of unknown function compare
PP_4008 +0.6 2.2 ATP-dependent serine protease compare
PP_4597 +0.6 2.0 Cyclic pyranopterin monophosphate synthase compare
PP_4344 +0.6 4.1 flagellar export pore protein compare
PP_3201 +0.6 1.3 BNR domain protein compare
PP_1683 +0.6 1.1 Transcriptional regulator, MarR family compare
PP_1548 +0.6 1.1 conserved protein of unknown function compare
PP_0025 +0.6 0.9 hypothetical protein compare
PP_1190 +0.6 2.0 conserved protein of unknown function compare
PP_4390 +0.6 2.9 flagellar basal-body rod protein FlgC compare
PP_4352 +0.6 4.0 flagellin export apparatus, substrate specificity protein compare
PP_1364 +0.6 3.0 conserved exported protein of unknown function compare
PP_3198 +0.6 1.2 Ferredoxin, 2Fe-2S compare
PP_3305 +0.6 2.4 Membrane protein, TerC family compare
PP_4561 +0.6 0.7 stress response protein compare
PP_5709 +0.6 3.0 protein of unknown function compare
PP_5248 +0.6 1.1 putative hydrolase compare
PP_4367 +0.6 2.6 Flagellar assembly protein FliH compare
PP_1876 +0.6 1.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_2737 +0.6 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1062 +0.6 1.3 MutT/nudix family protein compare
PP_4136 +0.6 0.5 Transcriptional regulator, LuxR family compare
PP_5143 +0.6 1.2 conserved membrane protein of unknown function compare
PP_1322 +0.6 0.7 putative Lipoprotein compare
PP_1038 +0.6 1.1 conserved protein of unknown function compare
PP_2650 +0.6 1.4 putative 4-hydroxybutyrate dehydrogenase compare
PP_1113 +0.6 3.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2379 +0.6 2.3 putative cytochrome oxidase biogenesis protein compare
PP_3249 +0.6 2.6 putative oxidoreductase compare
PP_1861 +0.6 2.4 Transcriptional regulator, LysR family compare
PP_4690 +0.6 2.0 Rieske 2Fe-2S family protein compare
PP_4837 +0.6 1.5 conserved protein of unknown function compare
PP_2192 +0.6 1.9 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_0632 +0.6 1.9 leader peptidase/N-methyltransferase compare
PP_0355 +0.6 1.6 Response regulator compare
PP_5712 +0.6 1.8 conserved protein of unknown function compare
PP_1979 +0.6 1.0 putative Hydrolase compare
PP_2028 +0.5 1.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0627 +0.5 1.5 conserved protein of unknown function compare
PP_0152 +0.5 1.6 conserved exported protein of unknown function compare
PP_1970 +0.5 2.5 putative Lipoprotein compare
PP_3060 +0.5 1.7 putative tail sheath protein compare
PP_1609 +0.5 1.9 conserved protein of unknown function compare
PP_3532 +0.5 1.2 Transcriptional regulator, AsnC family compare
PP_1071 +0.5 2.5 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_2615 +0.5 1.3 hemolysin-coregulated protein compare
PP_5594 +0.5 1.1 conserved protein of unknown function compare
PP_4038 +0.5 2.4 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4378 +0.5 4.4 flagellin, filament structural protein compare
PP_3831 +0.5 2.8 conserved protein of unknown function compare
PP_0831 +0.5 2.8 hypothetical protein compare
PP_3256 +0.5 1.8 Glycosyl transferase, group 2 family protein compare
PP_0116 +0.5 2.2 putative lipoprotein compare
PP_3487 +0.5 1.1 conserved exported protein of unknown function compare
PP_5520 +0.5 1.8 conserved protein of unknown function compare
PP_5017 +0.5 0.7 Sec-independent protein translocase protein TatB compare
PP_3378 +0.5 1.3 putative 2-ketogluconokinase compare
PP_4368 +0.5 2.1 flagellar motor switch protein compare
PP_3866 +0.5 1.3 conserved protein of unknown function compare
PP_5669 +0.5 2.8 ABC transporter related compare
PP_4483 +0.5 1.9 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_3503 +0.5 2.7 Sigma-54 dependent transcriptional regulator compare
PP_1020 +0.5 1.3 putative glucose-6-phosphate 1-epimerase compare
PP_3825 +0.5 1.6 conserved protein of unknown function compare
PP_0919 +0.5 1.4 conserved protein of unknown function compare
PP_5377 +0.5 2.6 conserved hypothetical protein compare
PP_3587 +0.5 1.5 lipid hydroperoxide peroxidase compare
PP_2280 +0.5 0.8 conserved protein of unknown function compare
PP_2658 +0.5 1.8 phosphate ABC transporter compare
PP_2456 +0.5 1.3 D-ribose ABC transporter - permease subunit compare
PP_0587 +0.5 2.4 conserved exported protein of unknown function compare
PP_3814 +0.5 1.5 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_2802 +0.5 2.9 Amino acid permease family protein compare
PP_3808 +0.5 1.0 Antibiotic synthesis protein MbtH compare
PP_2562 +0.5 2.2 conserved protein of unknown function compare
PP_1274 +0.5 2.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2976 +0.5 0.8 putative transposase compare
PP_0241 +0.5 1.9 Transporter compare
PP_4388 +0.5 3.7 Flagellar hook protein FlgE compare
PP_2903 +0.5 1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2029 +0.5 1.5 von Willebrand factor type A domain protein compare
PP_5528 +0.5 0.5 conserved protein of unknown function compare
PP_0497 +0.5 1.7 Transcriptional regulator, Cro/CI family compare
PP_2031 +0.5 1.4 conserved protein of unknown function compare
PP_0921 +0.5 1.2 Transcriptional regulator, ArsR family compare
PP_4342 +0.5 1.4 flagellar synthesis regulator, putative ATPase compare
PP_5668 +0.5 2.8 conserved membrane protein of unknown function compare
PP_0313 +0.5 1.6 putative electron transfer flavoprotein beta subunit compare
PP_3037 +0.5 1.0 C4-type zinc finger protein, DksA/TraR family compare
PP_2399 +0.5 1.9 conserved protein of unknown function compare
PP_5253 +0.5 1.4 Arylesterase compare
PP_1439 +0.5 1.0 conserved exported protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms