Experiment set19IT070 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19795 -11.0 -6.5 flagellar assembly protein FliH compare
PS417_19740 -10.4 -3.5 flagellar biosynthesis protein flip compare
PS417_19765 -10.0 -5.7 flagellar hook-length control protein compare
PS417_19695 -9.6 -6.0 flagellar biosynthesis sigma factor compare
PS417_21585 -9.3 -6.2 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_01575 -9.3 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_21565 -9.3 -3.8 flagellar basal body rod protein FlgC compare
PS417_19730 -9.2 -2.9 flagellar biosynthesis protein FliR compare
PS417_01635 -9.1 -3.9 nitrogen regulation protein NR(I) compare
PS417_05635 -9.0 -4.8 membrane protein compare
PS417_21595 -8.9 -3.2 flagellar biosynthesis protein FlgN compare
PS417_19725 -8.7 -4.1 flagellar biosynthesis protein FlhB compare
PS417_18595 -8.3 -3.0 3-isopropylmalate dehydratase compare
PS417_21570 -8.2 -4.3 flagellar basal body rod protein FlgB compare
PS417_21555 -8.2 -10.2 flagellar hook protein FlgE compare
PS417_18600 -8.1 -2.6 isopropylmalate isomerase compare
PS417_19785 -8.0 -2.8 flagellar biogenesis protein compare
PS417_26740 -8.0 -4.9 homoserine acetyltransferase compare
PS417_19870 -7.8 -3.1 flagellar rod assembly protein FlgJ compare
PS417_19860 -7.7 -11.9 flagellar hook protein FlgL compare
PS417_19745 -7.7 -5.4 flagellar assembly protein FliO compare
PS417_02005 -7.6 -5.3 glutamate synthase compare
PS417_04415 -7.6 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01565 -7.6 -3.4 imidazole glycerol phosphate synthase compare
PS417_19850 -7.5 -5.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23805 -7.4 -3.5 acetolactate synthase 3 regulatory subunit compare
PS417_19755 -7.2 -1.3 flagellar motor switch protein FliM compare
PS417_02510 -6.9 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19710 -6.9 -9.9 flagellar biosynthesis protein FlhA compare
PS417_19690 -6.9 -3.5 histidine kinase compare
PS417_19665 -6.9 -3.1 flagellar motor protein MotD compare
PS417_19825 -6.8 -7.9 ATPase AAA compare
PS417_23800 -6.8 -6.6 ketol-acid reductoisomerase compare
PS417_19650 -6.7 -3.2 chemotaxis protein CheW compare
PS417_18530 -6.7 -5.0 O-succinylhomoserine sulfhydrylase compare
PS417_19865 -6.7 -9.7 flagellar hook protein FlgK compare
PS417_19655 -6.6 -2.9 chemotaxis protein CheW compare
PS417_19880 -6.6 -4.8 flagellar basal body L-ring protein compare
PS417_19800 -6.6 -1.7 flagellar motor switch protein FliG compare
PS417_18570 -6.5 -3.6 peptidoglycan-binding protein compare
PS417_27705 -6.4 -1.2 amino acid dehydrogenase compare
PS417_27040 -6.3 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_04420 -6.3 -9.9 histidinol dehydrogenase compare
PS417_19840 -6.2 -9.2 flagellar cap protein FliD compare
PS417_19885 -6.1 -1.5 flagellar basal body rod protein FlgG compare
PS417_26995 -6.1 -9.0 phosphoserine phosphatase compare
PS417_18585 -6.0 -4.8 3-isopropylmalate dehydrogenase compare
PS417_05595 -6.0 -10.1 ornithine carbamoyltransferase compare
PS417_27595 -6.0 -2.5 recombinase XerC compare
PS417_27835 -6.0 -6.9 endoribonuclease compare
PS417_01640 -5.9 -4.1 histidine kinase compare
PS417_19805 -5.8 -2.6 flagellar M-ring protein FliF compare
PS417_01570 -5.8 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02210 -5.7 -6.5 diguanylate cyclase compare
PS417_08540 -5.7 -1.5 RNA helicase compare
PS417_23545 -5.6 -2.1 gamma-glutamyl kinase compare
PS417_01850 -5.6 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_28220 -5.6 -2.4 LysR family transcriptional regulator compare
PS417_06200 -5.5 -6.6 protein-PII uridylyltransferase compare
PS417_01855 -5.5 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_20105 -5.5 -17.0 glycosyl transferase compare
PS417_09210 -5.4 -1.7 TetR family transcriptional regulator compare
PS417_19735 -5.3 -3.6 flagellar biosynthesis protein FliQ compare
PS417_01955 -5.3 -10.2 peptidase compare
PS417_19660 -5.3 -4.6 cobalamin biosynthesis protein CobQ compare
PS417_21125 -5.2 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_10985 -5.2 -1.0 NADH:flavin oxidoreductase compare
PS417_01560 -5.2 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_02000 -5.2 -10.4 glutamate synthase compare
PS417_19630 -5.1 -2.9 LuxR family transcriptional regulator compare
PS417_22210 -5.1 -2.1 AraC family transcriptional regulator compare
PS417_19705 -5.1 -2.5 flagellar biosynthesis regulator FlhF compare
PS417_19675 -5.1 -4.9 chemotaxis protein CheY compare
PS417_23810 -5.0 -10.3 acetolactate synthase 3 catalytic subunit compare
PS417_26745 -5.0 -4.1 methionine biosynthesis protein MetW compare
PS417_12565 -5.0 -2.6 2-dehydro-3-deoxygluconokinase compare
PS417_08155 -4.9 -1.5 integration host factor subunit beta compare
PS417_19955 -4.9 -1.3 hypothetical protein compare
PS417_19620 -4.9 -2.0 hypothetical protein compare
PS417_02070 -4.8 -0.9 membrane protein compare
PS417_24745 -4.7 -1.9 gamma-glutamyl phosphate reductase compare
PS417_19835 -4.6 -1.2 flagellar biosynthesis protein FliS compare
PS417_27135 -4.6 -0.8 glutamine synthetase compare
PS417_18540 -4.6 -3.1 colicin V production CvpA compare
PS417_27795 -4.5 -0.8 orotate phosphoribosyltransferase compare
PS417_27300 -4.5 -0.8 cell division protein ZapA compare
PS417_21575 -4.4 -4.1 chemotaxis protein compare
PS417_28145 -4.4 -3.0 AraC family transcriptional regulator compare
PS417_23110 -4.4 -6.8 2-isopropylmalate synthase compare
PS417_23705 -4.3 -3.8 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
PS417_12855 -4.2 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23995 -4.2 -0.8 preprotein translocase subunit SecG compare
PS417_23710 -4.2 -4.4 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_02950 -4.1 -3.0 tRNA-dihydrouridine synthase B compare
PS417_19820 -4.1 -6.0 histidine kinase compare
PS417_01915 -4.1 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15885 -4.0 -1.7 GCN5 family acetyltransferase compare
PS417_23655 -4.0 -6.0 AsnC family transcriptional regulator compare
PS417_06375 -4.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_01580 -4.0 -1.0 imidazole glycerol phosphate synthase compare
PS417_21390 -3.9 -3.1 hypothetical protein compare
PS417_26890 -3.8 -4.8 dihydroxy-acid dehydratase compare
PS417_20985 -3.8 -1.7 porin compare
PS417_27195 -3.8 -1.0 N-acetylglutamate synthase compare
PS417_26985 -3.7 -5.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10245 -3.7 -1.5 hypothetical protein compare
PS417_21480 -3.7 -1.2 23S rRNA pseudouridylate synthase compare
PS417_27870 -3.7 -3.0 ATP-dependent DNA helicase RecG compare
PS417_23650 -3.7 -6.7 Kynureninase (EC 3.7.1.3) (from data) compare
PS417_27865 -3.6 -3.1 LysR family transcriptional regulator compare
PS417_18690 -3.5 -2.7 aromatic amino acid aminotransferase compare
PS417_00385 -3.5 -0.9 Fur family transcriptional regulator compare
PS417_14065 -3.5 -10.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_15935 -3.5 -2.1 Rrf2 family transcriptional regulator compare
PS417_15285 -3.5 -0.9 type VI secretion protein compare
PS417_04390 -3.5 -3.3 toluene tolerance protein compare
PS417_20610 -3.4 -1.3 hypothetical protein compare
PS417_00355 -3.4 -2.5 metal ABC transporter permease compare
PS417_01605 -3.3 -1.2 phosphoglycerate mutase compare
PS417_08620 -3.3 -0.9 hypothetical protein compare
PS417_22450 -3.3 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_15095 -3.3 -2.4 hypothetical protein compare
PS417_23950 -3.3 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_26175 -3.3 -0.9 sarcosine oxidase subunit gamma compare
PS417_02415 -3.3 -4.4 phosphoserine phosphatase compare
PS417_20095 -3.3 -10.0 hypothetical protein compare
PS417_22445 -3.3 -2.5 ATP-dependent DNA helicase RuvB compare
PS417_20090 -3.3 -7.4 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_23360 -3.2 -0.8 hypothetical protein compare
PS417_21705 -3.2 -3.3 arginine N-succinyltransferase compare
PS417_20650 -3.2 -7.5 hypothetical protein compare
PS417_04365 -3.2 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16490 -3.2 -1.2 cell division protein FtsK compare
PS417_03165 -3.1 -3.2 hypothetical protein compare
PS417_24535 -3.1 -2.1 membrane protein compare
PS417_26695 -3.1 -0.8 uracil phosphoribosyltransferase compare
PS417_08195 -3.1 -6.3 hypothetical protein compare
PS417_22705 -3.0 -1.8 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_08545 -3.0 -1.8 aromatic ring-opening dioxygenase LigB compare
PS417_08225 -3.0 -3.3 acetolactate synthase compare
PS417_13140 -3.0 -1.5 oxidoreductase compare
PS417_23695 -2.9 -9.4 electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data) compare
PS417_13165 -2.8 -2.6 peroxidase compare
PS417_23690 -2.8 -9.8 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
PS417_08090 -2.8 -0.7 3-oxoacyl-ACP reductase compare
PS417_15105 -2.8 -5.7 membrane protein compare
PS417_12290 -2.8 -5.7 sulfite reductase compare
PS417_23680 -2.8 -4.5 AraC family transcriptional regulator compare
PS417_24710 -2.8 -4.3 lipoprotein compare
PS417_08185 -2.8 -3.3 glycosyl transferase compare
PS417_23685 -2.8 -9.0 anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit [EC: 1.14.12.1] (from data) compare
PS417_01095 -2.8 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_04650 -2.8 -0.7 D-alanine--D-alanine ligase compare
PS417_14140 -2.7 -2.0 membrane protein compare
PS417_18755 -2.7 -1.5 CrtK compare
PS417_06945 -2.7 -1.0 membrane protein compare
PS417_08125 -2.7 -0.5 prephenate dehydratase compare
PS417_02560 -2.7 -1.5 23S rRNA methyltransferase compare
PS417_08250 -2.7 -2.0 competence protein ComEA compare
PS417_05575 -2.7 -8.6 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_23025 -2.7 -6.2 murein transglycosylase compare
PS417_26730 -2.7 -0.7 pyrroline-5-carboxylate reductase compare
PS417_23490 -2.7 -1.2 dihydrofolate reductase compare
PS417_26990 -2.7 -0.7 RNA pyrophosphohydrolase compare
PS417_21630 -2.7 -2.4 magnesium transporter compare
PS417_23210 -2.6 -1.4 serine acetyltransferase compare
PS417_20705 -2.6 -3.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_23770 -2.6 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_16370 -2.6 -5.9 chemotaxis protein CheY compare
PS417_23700 -2.6 -5.3 aromatic amino acid transporter compare
PS417_17035 -2.5 -1.0 Cro/Cl family transcriptional regulator compare
PS417_07875 -2.5 -0.8 hypothetical protein compare
PS417_05985 -2.5 -2.3 chemotaxis protein CheY compare
PS417_27435 -2.5 -6.6 polyphosphate kinase compare
PS417_06540 -2.5 -1.1 membrane protein compare
PS417_06710 -2.5 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_10995 -2.5 -2.4 GntR family transcriptional regulator compare
PS417_15495 -2.5 -1.0 FAD-dependent oxidoreductase compare
PS417_05500 -2.5 -1.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_07565 -2.5 -2.4 hypothetical protein compare
PS417_19645 -2.5 -2.4 chemotaxis protein compare
PS417_03830 -2.4 -6.7 protein disaggregation chaperone compare
PS417_20635 -2.4 -0.8 ABC transporter ATP-binding protein compare
PS417_16520 -2.4 -1.6 cold-shock protein compare
PS417_11535 -2.4 -2.7 nicotinate phosphoribosyltransferase compare
PS417_24675 -2.4 -1.7 lipoyl synthase compare
PS417_26815 -2.4 -1.9 peptidase M16 compare
PS417_05815 -2.4 -3.1 recombinase RecA compare
PS417_27935 -2.3 -1.0 type VI secretion protein compare
PS417_10720 -2.3 -4.8 chemotaxis protein CheY compare
PS417_02485 -2.3 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01995 -2.3 -1.8 hypothetical protein compare
PS417_06705 -2.3 -4.8 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) compare
PS417_03465 -2.3 -1.3 type III secretion protein compare
PS417_03260 -2.3 -1.0 5S ribosomal RNA compare
PS417_19615 -2.3 -5.4 chemotaxis protein CheW compare
PS417_27650 -2.3 -7.8 chemotaxis protein compare
PS417_04440 -2.3 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_03380 -2.2 -0.9 hypothetical protein compare
PS417_20160 -2.2 -1.4 cysteine synthase compare


Specific Phenotypes

For 10 genes in this experiment