Experiment set19IT070 for Pseudomonas putida KT2440

Compare to:

Growth at pH7 and carbon source Trisodium citrate dihydrate

200 most important genes:

  gene name fitness t score description  
PP_0967 -7.1 -4.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -7.0 -4.6 Indole-3-glycerol phosphate synthase compare
PP_1898 -6.8 -3.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4966 -6.7 -2.5 transcriptional regulator of methionine metabolism compare
PP_5128 -6.7 -4.6 Dihydroxy-acid dehydratase compare
PP_0874 -6.4 -2.5 conserved protein of unknown function compare
PP_2341 -6.4 -2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4679 -6.3 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -6.2 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.2 -4.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -6.0 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -5.8 -4.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1421 -5.7 -9.1 putative Sensor histidine kinase TctE conserved
PP_5571 -5.6 -1.3 conserved protein of unknown function compare
PP_1986 -5.6 -2.7 3-isopropylmalate dehydratase small subunit compare
PP_5114 -5.5 -2.8 putative adenine methyltransferase compare
PP_2370 -5.5 -3.0 conserved protein of unknown function compare
PP_0787 -5.5 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1826 -5.5 -2.7 Hydrolase, isochorismatase family compare
PP_0083 -5.4 -3.8 tryptophan synthase beta chain compare
PP_5225 -5.3 -1.2 frataxin compare
PP_2371 -5.2 -7.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -5.1 -8.3 O-succinylhomoserine sulfhydrylase compare
PP_0048 -5.1 -1.1 conserved protein of unknown function compare
PP_0082 -5.1 -6.1 tryptophan synthase alpha chain compare
PP_4829 -5.1 -3.7 putative precorrin-3B synthase compare
PP_1269 -5.0 -1.1 Universal stress protein family compare
PP_0801 -4.9 -1.1 conserved exported protein of unknown function compare
PP_0195 -4.9 -1.5 conserved protein of unknown function compare
PP_4793 -4.9 -1.5 conserved protein of unknown function compare
PP_5097 -4.8 -11.9 homoserine O-acetyltransferase compare
PP_4994 -4.8 -4.2 conserved protein of unknown function compare
PP_0022 -4.8 -1.1 hypothetical protein compare
PP_0775 -4.8 -1.8 conserved protein of unknown function compare
PP_1575 -4.8 -1.5 conserved protein of unknown function compare
PP_0356 -4.7 -7.1 malate synthase G compare
PP_t12 -4.7 -1.0 tRNA-Thr compare
PP_1420 -4.6 -6.7 Transcriptional regulatory protein tctD conserved
PP_3245 -4.6 -1.4 conserved protein of unknown function compare
PP_4696 -4.5 -3.1 Nitrogen regulation protein NR(I) compare
PP_2510 -4.5 -1.4 conserved protein of unknown function compare
PP_1025 -4.5 -10.8 2-isopropylmalate synthase compare
PP_4726 -4.5 -2.4 Chaperone protein DnaJ compare
PP_4680 -4.4 -12.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.4 -10.5 Ketol-acid reductoisomerase compare
PP_4797 -4.4 -1.3 conserved protein of unknown function compare
PP_1713 -4.3 -1.4 Transcriptional regulator PcaQ compare
PP_0966 -4.3 -8.0 Histidinol dehydrogenase compare
PP_5098 -4.3 -6.4 methionine biosynthesis protein MetW compare
PP_1995 -4.3 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4909 -4.3 -6.5 phosphoserine phosphatase compare
PP_2899 -4.3 -1.3 conserved exported protein of unknown function compare
PP_2976 -4.3 -1.3 putative transposase compare
PP_2633 -4.2 -1.3 conserved protein of unknown function compare
PP_3999 -4.1 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1079 -4.1 -4.8 Ornithine carbamoyltransferase compare
PP_1512 -4.1 -2.6 conserved protein of unknown function compare
PP_4699 -3.9 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0965 -3.9 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4247 -3.8 -1.2 Exonuclease compare
PP_0292 -3.8 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3511 -3.7 -4.7 Branched-chain-amino-acid aminotransferase compare
PP_2402 -3.7 -2.2 putative Sensor histidine kinase compare
PP_1988 -3.7 -5.5 3-isopropylmalate dehydrogenase compare
PP_0846 -3.7 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_0417 -3.7 -10.7 Anthranilate synthase component 1 compare
PP_0184 -3.7 -6.3 Argininosuccinate lyase compare
PP_4122 -3.6 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5248 -3.5 -1.1 putative hydrolase compare
PP_1404 -3.5 -2.8 conserved protein of unknown function compare
PP_4479 -3.4 -5.0 arginine N-succinyltransferase, subunit beta compare
PP_3924 -3.4 -3.4 conserved protein of unknown function compare
PP_5015 -3.3 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0035 -3.2 -2.3 putative bactoprenol-linked glycose transferase compare
PP_5525 -3.2 -2.6 conserved exported protein of unknown function compare
PP_3241 -3.2 -1.2 conserved exported protein of unknown function compare
PP_4482 -3.2 -3.6 Transcriptional regulator, AraC family compare
PP_4837 -3.2 -2.6 conserved protein of unknown function compare
PP_5093 -3.2 -1.0 twitching motility protein compare
PP_1985 -3.1 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_0420 -3.0 -6.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1237 -3.0 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1231 -3.0 -3.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2327 -3.0 -4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4890 -2.9 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -2.9 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1097 -2.9 -0.9 Methionine--tRNA ligase compare
PP_1088 -2.9 -6.2 Argininosuccinate synthase compare
PP_4126 -2.9 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4870 -2.8 -2.0 Azurin compare
PP_1418 -2.8 -4.9 putative Tricarboxylate transport protein TctC conserved
PP_2088 -2.8 -2.4 RNA polymerase sigma factor SigX compare
PP_3840 -2.7 -1.2 conserved protein of unknown function compare
PP_4695 -2.7 -7.4 Sensory box histidine kinase compare
PP_4329 -2.7 -1.7 FlhB domain protein compare
PP_1553 -2.7 -2.1 conserved protein of unknown function compare
PP_4925 -2.6 -3.0 conserved protein of unknown function compare
PP_0421 -2.5 -4.2 Anthranilate phosphoribosyltransferase compare
PP_2029 -2.5 -2.0 von Willebrand factor type A domain protein compare
PP_2168 -2.5 -5.2 Transaldolase compare
PP_2844 -2.5 -1.8 Urease subunit beta compare
PP_4471 -2.4 -4.8 Magnesium transporter compare
PP_2668 -2.4 -1.6 ABC efflux transporter, ATP-binding protein compare
PP_2375 -2.4 -6.6 cobalamin-dependent methionine synthase compare
PP_1428 -2.4 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_3861 -2.4 -2.1 Phage FluMu protein gp46 compare
PP_1697 -2.4 -1.5 transcriptional regulator, GntR family compare
PP_5176 -2.4 -1.3 conserved protein of unknown function compare
PP_2835 -2.3 -1.7 putative oxidoreductase compare
PP_1322 -2.3 -1.4 putative Lipoprotein compare
PP_0711 -2.2 -2.0 putative hydrolase compare
PP_5303 -2.2 -2.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4700 -2.2 -1.5 pantothenate synthetase compare
PP_1673 -2.2 -3.1 cobyrinate a,c-diamide synthase compare
PP_1415 -2.2 -1.5 putative membrane associated enzyme subunit compare
PP_5338 -2.2 -2.7 aspartate ammonia-lyase compare
PP_0152 -2.2 -1.5 conserved exported protein of unknown function compare
PP_4964 -2.2 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4977 -2.2 -4.8 5,10-methylenetetrahydrofolate reductase compare
PP_4005 -2.2 -1.6 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_0147 -2.1 -5.3 Citrate transporter conserved
PP_0959 -2.1 -1.7 phospholipid ABC transporter compare
PP_4642 -2.1 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_4785 -2.1 -3.3 conserved exported protein of unknown function compare
PP_5095 -2.1 -0.9 pyrroline-5-carboxylate reductase compare
PP_2336 -2.1 -4.0 aconitate hydratase 1 compare
PP_1020 -2.0 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_4480 -2.0 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_1208 -2.0 -1.4 conserved protein of unknown function, SlyX family compare
PP_t29 -2.0 -1.2 tRNA-Ala compare
PP_4124 -2.0 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_1026 -2.0 -1.0 Peptidase, M23/M37 family compare
PP_1233 -2.0 -2.1 sulfurtransferase compare
PP_4268 -2.0 -1.1 nucleoid-associated broad specificity regulator compare
PP_5217 -1.9 -5.2 Polyphosphate kinase compare
PP_0948 -1.9 -1.1 Phosphocarrier protein HPr compare
PP_5422 -1.9 -1.4 hypothetical protein compare
PP_1304 -1.9 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5706 -1.9 -2.2 Sec translocation complex - SecG subunit compare
PP_3102 -1.9 -2.2 conserved protein of unknown function compare
PP_2163 -1.9 -3.0 VacJ lipoprotein compare
PP_5278 -1.9 -3.0 4-guanidinobutyraldehyde dehydrogenase compare
PP_4316 -1.9 -3.9 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_0900 -1.9 -1.2 PAP2 family protein compare
PP_1416 -1.9 -3.3 putative Tricarboxylate transport protein TctA compare
PP_1352 -1.9 -2.1 UPF0234 protein PP_1352 compare
PP_2322 -1.9 -2.2 Major outer membrane lipoprotein compare
PP_4828 -1.8 -1.1 Precorrin-8X methylmutase compare
PP_5293 -1.8 -3.2 conserved protein of unknown function compare
PP_0307 -1.8 -1.2 conserved exported protein of unknown function compare
PP_4254 -1.8 -1.1 conserved protein of unknown function compare
PP_1303 -1.8 -2.8 Sulfate adenylyltransferase subunit 2 compare
PP_1186 -1.8 -1.3 two component system DNA-binding transcriptional dual regulator compare
PP_3265 -1.8 -1.4 putative phosphohydrolase of unknown function compare
PP_0685 -1.8 -1.1 conserved protein of unknown function compare
PP_0246 -1.8 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_4317 -1.8 -1.4 conserved protein of unknown function compare
PP_4045 -1.8 -1.4 conserved protein of unknown function compare
PP_0393 -1.8 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0749 -1.8 -2.7 conserved exported protein of unknown function compare
PP_1783 -1.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_2878 -1.8 -1.6 conserved protein of unknown function compare
PP_5039 -1.8 -1.1 conserved protein of unknown function compare
PP_1268 -1.8 -1.1 putative HtrA suppressor protein sohA compare
PP_5059 -1.8 -2.7 conserved exported protein of unknown function compare
PP_0937 -1.7 -2.2 endoribonuclease G (RNAse G) compare
PP_4517 -1.7 -1.1 conserved protein of unknown function compare
PP_4993 -1.7 -2.7 Glutathione synthetase compare
PP_3662 -1.7 -3.5 conserved protein of unknown function compare
PP_0516 -1.7 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4830 -1.7 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_5203 -1.7 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_1326 -1.7 -1.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0401 -1.7 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_0504 -1.7 -3.0 Outer membrane protein OprG compare
PP_1675 -1.6 -3.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4099 -1.6 -15.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0819 -1.6 -1.7 conserved ferredoxin-like protein of unknown function compare
PP_4902 -1.6 -1.6 Oligoribonuclease compare
PP_0888 -1.6 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_2672 -1.6 -1.7 Transcriptional activator protein ExaE compare
PP_0962 -1.6 -1.5 toluene-tolerance protein compare
PP_4130 -1.6 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2307 -1.6 -0.8 conserved protein of unknown function compare
PP_0291 -1.6 -1.4 conserved protein of unknown function compare
PP_4707 -1.6 -0.9 OsmY-related protein compare
PP_2136 -1.6 -1.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5216 -1.6 -0.9 exopolyphosphatase compare
PP_4131 -1.6 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_5639 -1.5 -3.8 conserved exported protein of unknown function compare
PP_2378 -1.5 -1.6 Fe/S biogenesis protein NfuA compare
PP_0640 -1.5 -1.6 conserved protein of unknown function compare
PP_5155 -1.5 -1.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1650 -1.5 -10.6 Sensor protein GacS compare
PP_0087 -1.5 -1.3 conserved exported protein of unknown function compare
PP_1390 -1.5 -1.3 conserved exported protein of unknown function compare
PP_5SB -1.5 -1.3 5S ribosomal RNA compare
PP_0568 -1.5 -3.2 conserved protein of unknown function compare
PP_1788 -1.5 -1.2 conserved protein of unknown function compare
PP_4989 -1.5 -1.5 Protein PilJ compare


Specific Phenotypes

For 3 genes in this experiment

For pH Trisodium citrate dihydrate in Pseudomonas putida KT2440

For pH Trisodium citrate dihydrate across organisms