Experiment set19IT066 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19730 -9.6 -4.5 flagellar biosynthesis protein FliR compare
PS417_19745 -8.1 -6.6 flagellar assembly protein FliO compare
PS417_19725 -7.6 -8.2 flagellar biosynthesis protein FlhB compare
PS417_19755 -7.4 -2.0 flagellar motor switch protein FliM compare
PS417_19650 -7.1 -4.8 chemotaxis protein CheW compare
PS417_23950 -6.8 -3.2 polynucleotide phosphorylase/polyadenylase compare
PS417_18595 -6.8 -4.3 3-isopropylmalate dehydratase compare
PS417_19800 -6.8 -2.6 flagellar motor switch protein FliG compare
PS417_19765 -6.4 -6.8 flagellar hook-length control protein compare
PS417_19885 -6.3 -2.2 flagellar basal body rod protein FlgG compare
PS417_19880 -6.2 -10.2 flagellar basal body L-ring protein compare
PS417_19710 -6.2 -14.0 flagellar biosynthesis protein FlhA compare
PS417_21555 -6.1 -13.4 flagellar hook protein FlgE compare
PS417_21565 -6.0 -4.7 flagellar basal body rod protein FlgC compare
PS417_19785 -5.9 -4.8 flagellar biogenesis protein compare
PS417_00185 -5.7 -5.5 tryptophan synthase subunit beta compare
PS417_21595 -5.7 -6.6 flagellar biosynthesis protein FlgN compare
PS417_19860 -5.7 -14.3 flagellar hook protein FlgL compare
PS417_02005 -5.6 -9.5 glutamate synthase compare
PS417_19740 -5.5 -7.6 flagellar biosynthesis protein flip compare
PS417_21585 -5.4 -8.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 -5.4 -13.7 flagellar biosynthesis sigma factor compare
PS417_19825 -5.2 -12.6 ATPase AAA compare
PS417_19690 -5.2 -4.6 histidine kinase compare
PS417_19795 -5.0 -10.4 flagellar assembly protein FliH compare
PS417_04420 -5.0 -10.0 histidinol dehydrogenase compare
PS417_05635 -4.9 -9.3 membrane protein compare
PS417_22565 -4.9 -1.3 formyltetrahydrofolate deformylase compare
PS417_19850 -4.8 -7.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19835 -4.8 -1.8 flagellar biosynthesis protein FliS compare
PS417_02510 -4.7 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19865 -4.6 -9.1 flagellar hook protein FlgK compare
PS417_19840 -4.6 -10.0 flagellar cap protein FliD compare
PS417_26745 -4.6 -8.1 methionine biosynthesis protein MetW compare
PS417_26740 -4.6 -8.4 homoserine acetyltransferase compare
PS417_04415 -4.6 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23800 -4.5 -9.0 ketol-acid reductoisomerase compare
PS417_27795 -4.5 -1.2 orotate phosphoribosyltransferase compare
PS417_18530 -4.4 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_21570 -4.4 -6.3 flagellar basal body rod protein FlgB compare
PS417_18585 -4.3 -5.0 3-isopropylmalate dehydrogenase compare
PS417_23995 -4.3 -1.2 preprotein translocase subunit SecG compare
PS417_19665 -4.3 -3.7 flagellar motor protein MotD compare
PS417_19735 -4.2 -3.3 flagellar biosynthesis protein FliQ compare
PS417_21575 -4.2 -4.1 chemotaxis protein compare
PS417_01915 -4.1 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23810 -4.1 -10.2 acetolactate synthase 3 catalytic subunit compare
PS417_06375 -4.1 -1.1 deoxycytidine triphosphate deaminase compare
PS417_26890 -4.1 -7.1 dihydroxy-acid dehydratase compare
PS417_21480 -4.0 -1.8 23S rRNA pseudouridylate synthase compare
PS417_01855 -4.0 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_02000 -4.0 -12.2 glutamate synthase compare
PS417_19805 -4.0 -5.1 flagellar M-ring protein FliF compare
PS417_24745 -4.0 -4.7 gamma-glutamyl phosphate reductase compare
PS417_18600 -3.9 -3.4 isopropylmalate isomerase compare
PS417_01575 -3.8 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27195 -3.8 -1.4 N-acetylglutamate synthase compare
PS417_19870 -3.8 -5.4 flagellar rod assembly protein FlgJ compare
PS417_19675 -3.7 -3.2 chemotaxis protein CheY compare
PS417_22450 -3.6 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_19660 -3.5 -3.3 cobalamin biosynthesis protein CobQ compare
PS417_03260 -3.4 -1.2 5S ribosomal RNA compare
PS417_19705 -3.3 -2.6 flagellar biosynthesis regulator FlhF compare
PS417_23545 -3.2 -3.1 gamma-glutamyl kinase compare
PS417_25725 -3.2 -11.1 anthranilate synthase component I compare
PS417_19790 -3.1 -2.2 ATP synthase compare
PS417_21655 -3.1 -1.1 aspartate kinase compare
PS417_18560 -3.1 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01565 -3.0 -3.1 imidazole glycerol phosphate synthase compare
PS417_26205 -3.0 -5.6 threonine aldolase compare
PS417_15495 -3.0 -1.7 FAD-dependent oxidoreductase compare
PS417_01560 -2.9 -3.1 imidazoleglycerol-phosphate dehydratase compare
PS417_23770 -2.9 -1.6 exodeoxyribonuclease V subunit alpha compare
PS417_20855 -2.9 -1.5 hypothetical protein compare
PS417_01635 -2.8 -4.9 nitrogen regulation protein NR(I) compare
PS417_22360 -2.7 -8.1 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
PS417_06200 -2.7 -7.1 protein-PII uridylyltransferase compare
PS417_23110 -2.7 -6.7 2-isopropylmalate synthase compare
PS417_26730 -2.7 -1.0 pyrroline-5-carboxylate reductase compare
PS417_26990 -2.7 -1.0 RNA pyrophosphohydrolase compare
PS417_01920 -2.6 -0.9 ATP-dependent protease subunit HslV compare
PS417_01640 -2.6 -6.0 histidine kinase compare
PS417_00180 -2.6 -3.4 tryptophan synthase subunit alpha compare
PS417_18540 -2.6 -4.2 colicin V production CvpA compare
PS417_05595 -2.6 -6.1 ornithine carbamoyltransferase compare
PS417_27305 -2.5 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_25720 -2.5 -6.1 anthranilate synthase component II compare
PS417_19655 -2.5 -1.8 chemotaxis protein CheW compare
PS417_12310 -2.5 -9.2 methionine synthase compare
PS417_27315 -2.4 -1.6 hypothetical protein compare
PS417_21560 -2.3 -2.9 flagellar basal body rod modification protein FlgD compare
PS417_23805 -2.3 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_01605 -2.2 -1.6 phosphoglycerate mutase compare
PS417_12870 -2.2 -2.3 enoyl-CoA hydratase compare
PS417_12855 -2.2 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08540 -2.2 -2.6 RNA helicase compare
PS417_27800 -2.2 -3.2 exodeoxyribonuclease III compare
PS417_18310 -2.2 -2.0 hypothetical protein compare
PS417_05975 -2.1 -1.0 chemotaxis protein CheW compare
PS417_27245 -2.1 -3.7 aminotransferase DegT compare
PS417_08365 -2.1 -1.3 hypothetical protein compare
PS417_24155 -2.1 -1.4 ATP-binding protein compare
PS417_22370 -2.0 -4.8 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_16555 -2.0 -1.7 cupin compare
PS417_27300 -2.0 -0.9 cell division protein ZapA compare
PS417_25710 -1.9 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_02560 -1.9 -1.9 23S rRNA methyltransferase compare
PS417_25715 -1.9 -4.0 anthranilate phosphoribosyltransferase compare
PS417_01850 -1.9 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21125 -1.9 -6.6 phosphoadenosine phosphosulfate reductase compare
PS417_04385 -1.9 -3.3 organic solvent ABC transporter substrate-binding protein compare
PS417_27005 -1.9 -1.1 membrane protein compare
PS417_19820 -1.9 -4.3 histidine kinase compare
PS417_04585 -1.8 -1.8 hypothetical protein compare
PS417_04915 -1.8 -1.9 glutamine ABC transporter ATP-binding protein compare
PS417_02415 -1.7 -3.1 phosphoserine phosphatase compare
PS417_02365 -1.7 -2.9 hypothetical protein compare
PS417_22350 -1.7 -2.1 Fis family transcriptional regulator compare
PS417_04595 -1.7 -2.2 cell division protein MraZ compare
PS417_21390 -1.7 -4.5 hypothetical protein compare
PS417_08155 -1.7 -1.2 integration host factor subunit beta compare
PS417_12355 -1.7 -2.3 magnesium chelatase compare
PS417_19830 -1.7 -2.2 flagellar assembly protein FliT compare
PS417_27865 -1.6 -2.3 LysR family transcriptional regulator compare
PS417_01955 -1.6 -6.2 peptidase compare
PS417_06075 -1.6 -1.1 hypothetical protein compare
PS417_02475 -1.6 -3.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_04390 -1.6 -2.4 toluene tolerance protein compare
PS417_06680 -1.6 -5.0 nuclease PIN compare
PS417_26510 -1.6 -5.3 5,10-methylenetetrahydrofolate reductase compare
PS417_27870 -1.6 -2.9 ATP-dependent DNA helicase RecG compare
PS417_15035 -1.5 -1.6 alkylhydroperoxidase compare
PS417_21705 -1.5 -2.8 arginine N-succinyltransferase compare
PS417_23025 -1.5 -4.5 murein transglycosylase compare
PS417_24500 -1.5 -2.0 DEAD/DEAH box helicase compare
PS417_27615 -1.5 -5.7 ammonia channel protein compare
PS417_12290 -1.4 -5.2 sulfite reductase compare
PS417_01580 -1.4 -1.1 imidazole glycerol phosphate synthase compare
PS417_15885 -1.4 -1.5 GCN5 family acetyltransferase compare
PS417_25650 -1.4 -2.5 anhydro-N-acetylmuramic acid kinase compare
PS417_18165 -1.4 -2.3 membrane protein compare
PS417_17240 -1.4 -2.3 trigger factor compare
PS417_05165 -1.4 -2.8 cytosol aminopeptidase compare
PS417_23375 -1.4 -1.4 cytochrome C oxidase compare
PS417_05815 -1.3 -2.7 recombinase RecA compare
PS417_00045 -1.3 -1.8 glycerol acyltransferase compare
PS417_03165 -1.3 -2.7 hypothetical protein compare
PS417_12390 -1.3 -1.8 hypothetical protein compare
PS417_17645 -1.3 -1.4 RND transporter compare
PS417_20105 -1.3 -10.4 glycosyl transferase compare
PS417_28050 -1.3 -2.6 hypothetical protein compare
PS417_24705 -1.3 -2.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_13425 -1.3 -2.4 cupin compare
PS417_20125 -1.3 -3.5 phosphoribosylglycinamide formyltransferase compare
PS417_24135 -1.3 -1.0 hypothetical protein compare
PS417_06370 -1.2 -1.3 cold-shock protein compare
PS417_23380 -1.2 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_20685 -1.2 -1.5 CAAX protease compare
PS417_02280 -1.2 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_12805 -1.2 -5.7 glycogen branching protein compare
PS417_17795 -1.2 -1.4 ABC transporter permease compare
PS417_15105 -1.2 -4.1 membrane protein compare
PS417_02210 -1.2 -3.5 diguanylate cyclase compare
PS417_07565 -1.2 -1.4 hypothetical protein compare
PS417_15085 -1.2 -3.2 ATPase AAA compare
PS417_27040 -1.2 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_27520 -1.2 -2.6 uroporphyrin-III methyltransferase compare
PS417_24370 -1.2 -0.8 (2Fe-2S)-binding protein compare
PS417_24615 -1.2 -0.6 hypothetical protein compare
PS417_22445 -1.2 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_16490 -1.2 -1.0 cell division protein FtsK compare
PS417_04650 -1.1 -0.9 D-alanine--D-alanine ligase compare
PS417_16160 -1.1 -1.9 ABC transporter substrate-binding protein compare
PS417_05200 -1.1 -2.6 DNA recombination protein RecO compare
PS417_26995 -1.1 -4.3 phosphoserine phosphatase compare
PS417_08515 -1.1 -1.9 hypothetical protein compare
PS417_12460 -1.1 -2.4 hypothetical protein compare
PS417_26985 -1.1 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27435 -1.1 -4.2 polyphosphate kinase compare
PS417_28510 -1.1 -3.5 chromosome partitioning protein compare
PS417_28450 -1.1 -0.8 XRE family transcriptional regulator compare
PS417_05100 -1.1 -1.5 RNA polymerase sigma factor compare
PS417_01285 -1.1 -1.6 haloacid dehalogenase compare
PS417_16465 -1.1 -4.8 sirohydrochlorin ferrochelatase compare
PS417_04475 -1.1 -2.8 hypothetical protein compare
PS417_28080 -1.1 -6.7 phosphate ABC transporter permease compare
PS417_08125 -1.1 -0.4 prephenate dehydratase compare
PS417_24525 -1.1 -1.9 nuclease compare
PS417_06355 -1.1 -1.8 protein-L-isoaspartate O-methyltransferase compare
PS417_02555 -1.1 -6.0 exoribonuclease R compare
PS417_12515 -1.1 -1.7 lactate dehydrogenase compare
PS417_28220 -1.1 -1.4 LysR family transcriptional regulator compare
PS417_20665 -1.1 -3.2 hypothetical protein compare
PS417_15100 -1.1 -1.7 BatB protein compare
PS417_03560 -1.1 -1.3 GTP-binding protein compare
PS417_02720 -1.1 -0.7 TetR family transcriptional regulator compare
PS417_00195 -1.0 -1.2 hypothetical protein compare
PS417_22355 -1.0 -2.0 glycine cleavage system protein H compare
PS417_20205 -1.0 -2.4 LysR family transcriptional regulator compare
PS417_06635 -1.0 -1.1 ferredoxin compare


Specific Phenotypes

For 3 genes in this experiment