Experiment set19IT065 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -4.7 -1.6 formyltetrahydrofolate deformylase compare
PS417_27795 -4.4 -1.5 orotate phosphoribosyltransferase compare
PS417_08155 -2.9 -2.0 integration host factor subunit beta compare
PS417_08125 -2.7 -0.9 prephenate dehydratase compare
PS417_04650 -2.7 -1.1 D-alanine--D-alanine ligase compare
PS417_26990 -2.7 -1.2 RNA pyrophosphohydrolase compare
PS417_27800 -2.6 -3.0 exodeoxyribonuclease III compare
PS417_17610 -2.6 -2.3 AsnC family transcriptional regulator compare
PS417_27865 -2.5 -3.4 LysR family transcriptional regulator compare
PS417_09140 -2.5 -4.0 biopolymer transporter ExbB compare
PS417_22520 -2.3 -2.6 histidine kinase compare
PS417_20985 -2.3 -2.7 porin compare
PS417_24745 -2.3 -3.6 gamma-glutamyl phosphate reductase compare
PS417_03260 -2.2 -1.8 5S ribosomal RNA compare
PS417_23545 -2.1 -2.5 gamma-glutamyl kinase compare
PS417_23025 -2.0 -5.8 murein transglycosylase compare
PS417_01580 -2.0 -2.0 imidazole glycerol phosphate synthase compare
PS417_27195 -1.9 -1.8 N-acetylglutamate synthase compare
PS417_27870 -1.9 -3.1 ATP-dependent DNA helicase RecG compare
PS417_19835 -1.8 -2.2 flagellar biosynthesis protein FliS compare
PS417_07640 -1.8 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_06680 -1.8 -5.8 nuclease PIN compare
PS417_21630 -1.8 -2.8 magnesium transporter compare
PS417_23770 -1.8 -2.4 exodeoxyribonuclease V subunit alpha compare
PS417_17645 -1.8 -2.2 RND transporter compare
PS417_06685 -1.8 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_04375 -1.7 -2.8 ABC transporter ATP-binding protein compare
PS417_04365 -1.7 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23810 -1.7 -9.3 acetolactate synthase 3 catalytic subunit compare
PS417_09235 -1.6 -1.3 molecular chaperone compare
PS417_21595 -1.6 -5.2 flagellar biosynthesis protein FlgN compare
PS417_04380 -1.6 -1.1 ABC transporter permease compare
PS417_19350 -1.6 -3.2 GTP cyclohydrolase compare
PS417_05815 -1.6 -3.4 recombinase RecA compare
PS417_06245 -1.6 -2.1 zinc metallopeptidase RseP compare
PS417_26420 -1.6 -1.5 hypothetical protein compare
PS417_26260 -1.5 -1.8 hypothetical protein compare
PS417_19725 -1.5 -3.9 flagellar biosynthesis protein FlhB compare
PS417_04080 -1.5 -2.1 peptide ABC transporter substrate-binding protein compare
PS417_19755 -1.5 -2.4 flagellar motor switch protein FliM compare
PS417_16720 -1.5 -1.4 membrane protein compare
PS417_06095 -1.5 -1.5 energy transducer TonB compare
PS417_27595 -1.5 -2.2 recombinase XerC compare
PS417_09210 -1.5 -1.8 TetR family transcriptional regulator compare
PS417_06375 -1.4 -0.8 deoxycytidine triphosphate deaminase compare
PS417_18595 -1.4 -2.0 3-isopropylmalate dehydratase compare
PS417_15285 -1.4 -1.2 type VI secretion protein compare
PS417_02975 -1.4 -3.1 3-dehydroquinate dehydratase compare
PS417_24500 -1.4 -2.6 DEAD/DEAH box helicase compare
PS417_24155 -1.4 -1.6 ATP-binding protein compare
PS417_12355 -1.3 -1.3 magnesium chelatase compare
PS417_02555 -1.3 -7.8 exoribonuclease R compare
PS417_03525 -1.3 -1.6 hypothetical protein compare
PS417_09865 -1.3 -1.4 hypothetical protein compare
PS417_08135 -1.3 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19790 -1.3 -3.4 ATP synthase compare
PS417_23375 -1.3 -1.4 cytochrome C oxidase compare
PS417_23370 -1.3 -3.7 protoheme IX farnesyltransferase compare
PS417_12805 -1.2 -6.7 glycogen branching protein compare
PS417_19880 -1.2 -6.7 flagellar basal body L-ring protein compare
PS417_19195 -1.2 -2.8 hypothetical protein compare
PS417_19765 -1.2 -7.1 flagellar hook-length control protein compare
PS417_22450 -1.2 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_19860 -1.2 -8.2 flagellar hook protein FlgL compare
PS417_15875 -1.2 -1.4 LuxR family transcriptional regulator compare
PS417_08365 -1.2 -1.1 hypothetical protein compare
PS417_25390 -1.2 -2.8 MFS transporter compare
PS417_18600 -1.2 -1.9 isopropylmalate isomerase compare
PS417_02225 -1.2 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01575 -1.1 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_20855 -1.1 -1.1 hypothetical protein compare
PS417_04440 -1.1 -2.2 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_27475 -1.1 -2.1 membrane protein compare
PS417_02280 -1.1 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_19840 -1.1 -6.5 flagellar cap protein FliD compare
PS417_04390 -1.1 -2.2 toluene tolerance protein compare
PS417_08090 -1.1 -1.0 3-oxoacyl-ACP reductase compare
PS417_14305 -1.1 -1.9 hydroxyproline-2-epimerase compare
PS417_21585 -1.1 -5.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_02365 -1.1 -1.9 hypothetical protein compare
PS417_00185 -1.1 -2.2 tryptophan synthase subunit beta compare
PS417_23805 -1.1 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_06205 -1.1 -4.7 methionine aminopeptidase compare
PS417_24525 -1.1 -1.6 nuclease compare
PS417_05025 -1.1 -1.8 maleylacetoacetate isomerase compare
PS417_21555 -1.0 -7.7 flagellar hook protein FlgE compare
PS417_01640 -1.0 -2.1 histidine kinase compare
PS417_04595 -1.0 -1.9 cell division protein MraZ compare
PS417_08540 -1.0 -2.0 RNA helicase compare
PS417_24370 -1.0 -0.8 (2Fe-2S)-binding protein compare
PS417_11475 -1.0 -2.1 membrane protein compare
PS417_06745 -1.0 -1.5 polysaccharide deacetylase compare
PS417_26645 -1.0 -1.5 chemotaxis protein compare
PS417_07565 -1.0 -1.6 hypothetical protein compare
PS417_21255 -1.0 -1.1 hypothetical protein compare
PS417_28515 -1.0 -2.1 16S rRNA methyltransferase compare
PS417_04385 -1.0 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_13510 -1.0 -0.8 polyketide cyclase compare
PS417_01825 -0.9 -1.9 chemotaxis protein compare
PS417_01560 -0.9 -0.9 imidazoleglycerol-phosphate dehydratase compare
PS417_15915 -0.9 -1.1 hypothetical protein compare
PS417_19695 -0.9 -6.4 flagellar biosynthesis sigma factor compare
PS417_12910 -0.9 -1.5 alanine racemase compare
PS417_23390 -0.9 -4.0 ubiquinol oxidase subunit II compare
PS417_26985 -0.9 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_28030 -0.9 -2.0 hypothetical protein compare
PS417_01855 -0.9 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_19730 -0.9 -2.1 flagellar biosynthesis protein FliR compare
PS417_01585 -0.9 -3.0 amino acid ABC transporter substrate-binding protein compare
PS417_19865 -0.9 -4.4 flagellar hook protein FlgK compare
PS417_00180 -0.9 -1.9 tryptophan synthase subunit alpha compare
PS417_21570 -0.9 -3.7 flagellar basal body rod protein FlgB compare
PS417_23915 -0.9 -2.3 pantoate--beta-alanine ligase compare
PS417_22360 -0.9 -4.2 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
PS417_01605 -0.9 -0.9 phosphoglycerate mutase compare
PS417_26660 -0.9 -2.1 protein PilI compare
PS417_17980 -0.9 -1.2 ABC transporter permease compare
PS417_18585 -0.9 -2.2 3-isopropylmalate dehydrogenase compare
PS417_19945 -0.9 -3.5 MarR family transcriptional regulator compare
PS417_19740 -0.9 -3.3 flagellar biosynthesis protein flip compare
PS417_03815 -0.9 -1.7 DNA transporter compare
PS417_07710 -0.9 -3.1 membrane protein compare
PS417_00900 -0.9 -1.3 4-aminobutyrate aminotransferase compare
PS417_19785 -0.9 -2.2 flagellar biogenesis protein compare
PS417_01635 -0.9 -2.7 nitrogen regulation protein NR(I) compare
PS417_15105 -0.8 -3.6 membrane protein compare
PS417_12855 -0.8 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_10575 -0.8 -1.8 DNA alkylation repair protein compare
PS417_17945 -0.8 -0.8 hypothetical protein compare
PS417_17375 -0.8 -1.9 C4-dicarboxylate ABC transporter compare
PS417_19850 -0.8 -3.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15095 -0.8 -1.4 hypothetical protein compare
PS417_01565 -0.8 -3.3 imidazole glycerol phosphate synthase compare
PS417_27615 -0.8 -4.1 ammonia channel protein compare
PS417_23380 -0.8 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_13165 -0.8 -1.6 peroxidase compare
PS417_00465 -0.8 -2.1 hypothetical protein compare
PS417_18310 -0.8 -1.1 hypothetical protein compare
PS417_12520 -0.8 -1.5 hypothetical protein compare
PS417_26605 -0.8 -0.9 malonate decarboxylase subunit beta compare
PS417_24895 -0.8 -0.6 hypothetical protein compare
PS417_06825 -0.8 -1.9 hypothetical protein compare
PS417_00045 -0.8 -1.4 glycerol acyltransferase compare
PS417_06145 -0.8 -0.7 hypothetical protein compare
PS417_04420 -0.8 -4.0 histidinol dehydrogenase compare
PS417_22445 -0.8 -1.8 ATP-dependent DNA helicase RuvB compare
PS417_18475 -0.8 -1.6 Pyrrolidone-carboxylate peptidase compare
PS417_28080 -0.8 -5.0 phosphate ABC transporter permease compare
PS417_09330 -0.8 -1.4 NAD(P)H-quinone oxidoreductase compare
PS417_02720 -0.8 -0.7 TetR family transcriptional regulator compare
PS417_18020 -0.8 -1.3 hypothetical protein compare
PS417_00370 -0.8 -0.8 hypothetical protein compare
PS417_22640 -0.8 -1.5 cytochrome C biogenesis protein CcmE compare
PS417_22570 -0.8 -0.6 H-NS histone compare
PS417_27940 -0.8 -0.7 type VI secretion protein compare
PS417_19795 -0.8 -4.7 flagellar assembly protein FliH compare
PS417_28450 -0.8 -1.4 XRE family transcriptional regulator compare
PS417_07360 -0.8 -2.9 ArtI protein compare
PS417_03300 -0.8 -1.7 alanine acetyltransferase compare
PS417_10025 -0.8 -0.9 bacteriophage lambda NinG family protein compare
PS417_02510 -0.8 -2.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02005 -0.8 -3.6 glutamate synthase compare
PS417_01620 -0.8 -1.4 preprotein translocase subunit SecB compare
PS417_19710 -0.7 -4.3 flagellar biosynthesis protein FlhA compare
PS417_06770 -0.7 -2.6 multidrug transporter compare
PS417_19800 -0.7 -2.2 flagellar motor switch protein FliG compare
PS417_22630 -0.7 -0.9 hypothetical protein compare
PS417_20480 -0.7 -1.3 hypothetical protein compare
PS417_01735 -0.7 -1.3 ABC transporter permease compare
PS417_24580 -0.7 -1.8 pseudouridine synthase compare
PS417_02880 -0.7 -1.0 copper chaperone compare
PS417_23800 -0.7 -4.5 ketol-acid reductoisomerase compare
PS417_01850 -0.7 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_28070 -0.7 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_02160 -0.7 -0.9 hypothetical protein compare
PS417_20705 -0.7 -1.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_26370 -0.7 -1.5 RNA helicase compare
PS417_15805 -0.7 -1.2 transporter compare
PS417_22115 -0.7 -1.2 transcriptional regulator compare
PS417_23015 -0.7 -2.0 NGG1p interacting factor 3 protein, NIF3 compare
PS417_26445 -0.7 -1.8 ArsR family transcriptional regulator compare
PS417_13950 -0.7 -1.7 LuxR family transcriptional regulator compare
PS417_24705 -0.7 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_09470 -0.7 -0.7 hypothetical protein compare
PS417_17780 -0.7 -0.8 Ais protein compare
PS417_15780 -0.7 -2.0 membrane protein compare
PS417_12730 -0.7 -1.3 glycosyltransferase compare
PS417_15650 -0.7 -0.9 glutamine amidotransferase compare
PS417_17490 -0.7 -1.5 ABC transporter ATP-binding protein compare
PS417_13605 -0.7 -2.4 short-chain dehydrogenase compare
PS417_13185 -0.7 -1.1 RND transporter compare
PS417_21475 -0.7 -1.7 HAD family hydrolase compare
PS417_11825 -0.7 -1.0 transcriptional regulator compare
PS417_22175 -0.7 -1.1 amino acid transporter LysE compare
PS417_23900 -0.7 -3.1 poly(A) polymerase compare
PS417_19825 -0.7 -4.9 ATPase AAA compare
PS417_19955 -0.7 -0.9 hypothetical protein compare
PS417_27315 -0.7 -0.9 hypothetical protein compare
PS417_06200 -0.7 -2.7 protein-PII uridylyltransferase compare
PS417_15675 -0.7 -1.5 chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments