Experiment set19IT064 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21570 -11.3 -4.0 flagellar basal body rod protein FlgB compare
PS417_01565 -9.5 -3.4 imidazole glycerol phosphate synthase compare
PS417_21565 -9.4 -3.8 flagellar basal body rod protein FlgC compare
PS417_21595 -9.1 -3.2 flagellar biosynthesis protein FlgN compare
PS417_21585 -9.0 -9.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19725 -8.9 -4.1 flagellar biosynthesis protein FlhB compare
PS417_18600 -8.3 -2.6 isopropylmalate isomerase compare
PS417_19785 -8.3 -2.8 flagellar biogenesis protein compare
PS417_19765 -8.1 -8.3 flagellar hook-length control protein compare
PS417_01570 -8.0 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23805 -7.7 -3.6 acetolactate synthase 3 regulatory subunit compare
PS417_18530 -7.6 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_28220 -7.6 -2.4 LysR family transcriptional regulator compare
PS417_19860 -7.5 -22.9 flagellar hook protein FlgL compare
PS417_19825 -7.5 -10.7 ATPase AAA compare
PS417_26740 -7.5 -6.1 homoserine acetyltransferase compare
PS417_02510 -7.5 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19755 -7.4 -1.3 flagellar motor switch protein FliM compare
PS417_19665 -7.1 -3.1 flagellar motor protein MotD compare
PS417_18585 -7.1 -4.0 3-isopropylmalate dehydrogenase compare
PS417_21555 -7.0 -11.0 flagellar hook protein FlgE compare
PS417_19650 -7.0 -3.3 chemotaxis protein CheW compare
PS417_01855 -6.9 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_19705 -6.9 -2.5 flagellar biosynthesis regulator FlhF compare
PS417_23950 -6.8 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_19620 -6.7 -2.1 hypothetical protein compare
PS417_19675 -6.7 -3.6 chemotaxis protein CheY compare
PS417_18595 -6.7 -3.1 3-isopropylmalate dehydratase compare
PS417_01635 -6.7 -4.5 nitrogen regulation protein NR(I) compare
PS417_19800 -6.7 -1.7 flagellar motor switch protein FliG compare
PS417_01955 -6.7 -6.5 peptidase compare
PS417_19850 -6.6 -10.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_17795 -6.6 -2.1 ABC transporter permease compare
PS417_05595 -6.6 -11.4 ornithine carbamoyltransferase compare
PS417_19710 -6.5 -11.7 flagellar biosynthesis protein FlhA compare
PS417_01640 -6.5 -3.1 histidine kinase compare
PS417_19805 -6.4 -2.3 flagellar M-ring protein FliF compare
PS417_19885 -6.3 -1.5 flagellar basal body rod protein FlgG compare
PS417_23800 -6.2 -12.6 ketol-acid reductoisomerase compare
PS417_19840 -6.2 -8.9 flagellar cap protein FliD compare
PS417_19865 -6.2 -8.4 flagellar hook protein FlgK compare
PS417_05635 -6.2 -7.2 membrane protein compare
PS417_18560 -6.1 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25720 -6.1 -6.1 anthranilate synthase component II compare
PS417_19660 -6.0 -4.2 cobalamin biosynthesis protein CobQ compare
PS417_25725 -5.9 -12.7 anthranilate synthase component I compare
PS417_23545 -5.9 -2.1 gamma-glutamyl kinase compare
PS417_04420 -5.8 -10.3 histidinol dehydrogenase compare
PS417_01575 -5.7 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02005 -5.7 -7.0 glutamate synthase compare
PS417_23775 -5.7 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_08230 -5.6 -1.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19745 -5.6 -2.8 flagellar assembly protein FliO compare
PS417_19740 -5.6 -5.9 flagellar biosynthesis protein flip compare
PS417_18540 -5.6 -3.6 colicin V production CvpA compare
PS417_19880 -5.6 -6.1 flagellar basal body L-ring protein compare
PS417_26985 -5.5 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19695 -5.5 -4.2 flagellar biosynthesis sigma factor compare
PS417_19790 -5.5 -3.2 ATP synthase compare
PS417_19690 -5.4 -3.9 histidine kinase compare
PS417_01995 -5.4 -2.5 hypothetical protein compare
PS417_00385 -5.4 -1.0 Fur family transcriptional regulator compare
PS417_21575 -5.3 -4.3 chemotaxis protein compare
PS417_19735 -5.3 -3.6 flagellar biosynthesis protein FliQ compare
PS417_19795 -5.3 -6.5 flagellar assembly protein FliH compare
PS417_22445 -5.3 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_20105 -5.2 -17.1 glycosyl transferase compare
PS417_08245 -5.1 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08155 -5.1 -1.6 integration host factor subunit beta compare
PS417_06200 -5.1 -8.2 protein-PII uridylyltransferase compare
PS417_20635 -5.1 -0.9 ABC transporter ATP-binding protein compare
PS417_02000 -5.1 -10.0 glutamate synthase compare
PS417_08540 -5.1 -1.6 RNA helicase compare
PS417_02720 -5.1 -0.9 TetR family transcriptional regulator compare
PS417_19730 -5.0 -2.5 flagellar biosynthesis protein FliR compare
PS417_19870 -4.9 -3.8 flagellar rod assembly protein FlgJ compare
PS417_04415 -4.9 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27835 -4.9 -3.4 endoribonuclease compare
PS417_22565 -4.8 -0.9 formyltetrahydrofolate deformylase compare
PS417_24745 -4.8 -1.9 gamma-glutamyl phosphate reductase compare
PS417_14065 -4.7 -9.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23110 -4.7 -7.8 2-isopropylmalate synthase compare
PS417_03560 -4.7 -1.7 GTP-binding protein compare
PS417_23810 -4.7 -8.7 acetolactate synthase 3 catalytic subunit compare
PS417_04585 -4.6 -1.4 hypothetical protein compare
PS417_08220 -4.5 -0.8 epimerase compare
PS417_27300 -4.5 -0.8 cell division protein ZapA compare
PS417_00185 -4.5 -2.9 tryptophan synthase subunit beta compare
PS417_27795 -4.5 -0.8 orotate phosphoribosyltransferase compare
PS417_26995 -4.5 -7.7 phosphoserine phosphatase compare
PS417_02475 -4.5 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_19275 -4.4 -1.1 hypothetical protein compare
PS417_20610 -4.4 -1.1 hypothetical protein compare
PS417_25710 -4.4 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_24460 -4.4 -2.4 hypothetical protein compare
PS417_16490 -4.3 -1.1 cell division protein FtsK compare
PS417_23995 -4.3 -0.8 preprotein translocase subunit SecG compare
PS417_26745 -4.2 -4.2 methionine biosynthesis protein MetW compare
PS417_09085 -4.2 -1.1 hypothetical protein compare
PS417_19820 -4.2 -6.2 histidine kinase compare
PS417_27245 -4.2 -4.3 aminotransferase DegT compare
PS417_26890 -4.1 -4.5 dihydroxy-acid dehydratase compare
PS417_01915 -4.1 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_18570 -4.1 -4.6 peptidoglycan-binding protein compare
PS417_06375 -4.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_00180 -4.1 -1.6 tryptophan synthase subunit alpha compare
PS417_19830 -4.0 -3.0 flagellar assembly protein FliT compare
PS417_12855 -4.0 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01580 -4.0 -1.0 imidazole glycerol phosphate synthase compare
PS417_12565 -4.0 -1.7 2-dehydro-3-deoxygluconokinase compare
PS417_08225 -4.0 -3.9 acetolactate synthase compare
PS417_20985 -3.9 -1.7 porin compare
PS417_06680 -3.9 -8.2 nuclease PIN compare
PS417_02440 -3.9 -3.2 flagellar motor protein MotB compare
PS417_06895 -3.8 -3.6 DNA-binding protein compare
PS417_27195 -3.8 -1.0 N-acetylglutamate synthase compare
PS417_21390 -3.8 -4.9 hypothetical protein compare
PS417_11375 -3.8 -2.7 hypothetical protein compare
PS417_22210 -3.8 -2.2 AraC family transcriptional regulator compare
PS417_04380 -3.7 -1.2 ABC transporter permease compare
PS417_20855 -3.7 -0.9 hypothetical protein compare
PS417_24710 -3.7 -4.0 lipoprotein compare
PS417_05075 -3.6 -8.9 serine dehydratase compare
PS417_04375 -3.5 -1.8 ABC transporter ATP-binding protein compare
PS417_22450 -3.5 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_23360 -3.4 -0.9 hypothetical protein compare
PS417_18690 -3.4 -3.6 aromatic amino acid aminotransferase compare
PS417_18545 -3.4 -1.9 cell division protein compare
PS417_03165 -3.3 -4.3 hypothetical protein compare
PS417_02485 -3.2 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_15135 -3.2 -1.0 hypothetical protein compare
PS417_20650 -3.2 -6.5 hypothetical protein compare
PS417_28265 -3.2 -2.0 pyridoxamine kinase compare
PS417_26695 -3.2 -0.8 uracil phosphoribosyltransferase compare
PS417_27800 -3.1 -2.1 exodeoxyribonuclease III compare
PS417_21655 -3.1 -0.7 aspartate kinase compare
PS417_02520 -3.0 -6.2 chemotaxis protein compare
PS417_20095 -3.0 -7.9 hypothetical protein compare
PS417_19685 -3.0 -4.7 protein phosphatase compare
PS417_08090 -2.9 -0.7 3-oxoacyl-ACP reductase compare
PS417_01990 -2.9 -4.2 cell division protein compare
PS417_07575 -2.8 -2.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_08190 -2.8 -8.0 membrane protein compare
PS417_01850 -2.8 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21700 -2.8 -2.7 arginine N-succinyltransferase compare
PS417_08125 -2.8 -0.5 prephenate dehydratase compare
PS417_23770 -2.8 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_27010 -2.7 -5.5 threonine dehydratase compare
PS417_04650 -2.7 -0.7 D-alanine--D-alanine ligase compare
PS417_26990 -2.7 -0.7 RNA pyrophosphohydrolase compare
PS417_20090 -2.7 -5.5 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_02415 -2.7 -3.5 phosphoserine phosphatase compare
PS417_26730 -2.7 -0.7 pyrroline-5-carboxylate reductase compare
PS417_19835 -2.7 -1.0 flagellar biosynthesis protein FliS compare
PS417_19630 -2.7 -2.3 LuxR family transcriptional regulator compare
PS417_08195 -2.7 -6.8 hypothetical protein compare
PS417_18840 -2.7 -5.2 chemotaxis protein compare
PS417_06540 -2.7 -1.5 membrane protein compare
PS417_01920 -2.6 -0.6 ATP-dependent protease subunit HslV compare
PS417_01560 -2.6 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_07170 -2.6 -3.4 hypothetical protein compare
PS417_19655 -2.5 -1.7 chemotaxis protein CheW compare
PS417_14980 -2.5 -0.9 universal stress protein UspA compare
PS417_27870 -2.5 -2.6 ATP-dependent DNA helicase RecG compare
PS417_22620 -2.5 -3.8 pyruvate kinase compare
PS417_21480 -2.5 -1.0 23S rRNA pseudouridylate synthase compare
PS417_05575 -2.5 -5.7 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_07560 -2.5 -1.5 universal stress protein UspA compare
PS417_25715 -2.5 -3.9 anthranilate phosphoribosyltransferase compare
PS417_07620 -2.4 -1.5 beta-hexosaminidase compare
PS417_19645 -2.4 -2.4 chemotaxis protein compare
PS417_24835 -2.4 -3.0 hypothetical protein compare
PS417_15100 -2.3 -1.6 BatB protein compare
PS417_02225 -2.3 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21320 -2.3 -2.7 transcriptional regulator compare
PS417_05165 -2.3 -3.0 cytosol aminopeptidase compare
PS417_21580 -2.3 -5.4 chemotaxis protein CheW compare
PS417_12310 -2.3 -5.2 methionine synthase compare
PS417_21125 -2.3 -2.2 phosphoadenosine phosphosulfate reductase compare
PS417_16000 -2.2 -1.5 chemotaxis protein CheY compare
PS417_15495 -2.2 -1.0 FAD-dependent oxidoreductase compare
PS417_03380 -2.2 -0.9 hypothetical protein compare
PS417_23580 -2.2 -1.1 peptidylprolyl isomerase compare
PS417_08170 -2.2 -6.6 capsular biosynthesis protein compare
PS417_12290 -2.2 -4.9 sulfite reductase compare
PS417_16370 -2.2 -4.7 chemotaxis protein CheY compare
PS417_12220 -2.2 -2.1 hydroxyacylglutathione hydrolase compare
PS417_14590 -2.2 -1.4 LysR family transcriptional regulator compare
PS417_20160 -2.1 -1.8 cysteine synthase compare
PS417_17945 -2.1 -0.8 hypothetical protein compare
PS417_17565 -2.1 -1.6 branched-chain amino acid aminotransferase compare
PS417_23385 -2.1 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_05080 -2.1 -3.5 LysR family transcriptional regulator compare
PS417_24115 -2.1 -1.5 hypothetical protein compare
PS417_15095 -2.1 -1.4 hypothetical protein compare
PS417_19615 -2.1 -3.4 chemotaxis protein CheW compare
PS417_20645 -2.1 -7.7 membrane protein compare
PS417_22190 -2.0 -5.4 diguanylate cyclase compare
PS417_16990 -2.0 -4.3 acyl-CoA dehydrogenase compare
PS417_04900 -2.0 -6.1 amino acid ABC transporter substrate-binding protein compare


Specific Phenotypes

For 10 genes in this experiment