Experiment set19IT062 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.3 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27835 -9.1 -4.1 endoribonuclease compare
PS417_21595 -9.1 -3.0 flagellar biosynthesis protein FlgN compare
PS417_05635 -9.0 -4.6 membrane protein compare
PS417_18595 -8.4 -2.9 3-isopropylmalate dehydratase compare
PS417_18540 -8.2 -3.2 colicin V production CvpA compare
PS417_18600 -8.2 -2.5 isopropylmalate isomerase compare
PS417_21575 -8.1 -4.1 chemotaxis protein compare
PS417_04415 -7.9 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08540 -7.5 -1.3 RNA helicase compare
PS417_23805 -7.5 -3.4 acetolactate synthase 3 regulatory subunit compare
PS417_19755 -7.3 -1.3 flagellar motor switch protein FliM compare
PS417_19740 -7.3 -6.3 flagellar biosynthesis protein flip compare
PS417_21570 -7.1 -4.2 flagellar basal body rod protein FlgB compare
PS417_19695 -7.1 -8.7 flagellar biosynthesis sigma factor compare
PS417_18560 -7.0 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_21585 -7.0 -11.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_18585 -6.9 -3.8 3-isopropylmalate dehydrogenase compare
PS417_19650 -6.9 -3.1 chemotaxis protein CheW compare
PS417_25720 -6.8 -6.5 anthranilate synthase component II compare
PS417_01855 -6.7 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_23800 -6.7 -10.2 ketol-acid reductoisomerase compare
PS417_19800 -6.6 -1.6 flagellar motor switch protein FliG compare
PS417_19675 -6.6 -3.4 chemotaxis protein CheY compare
PS417_23950 -6.6 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_25725 -6.5 -9.9 anthranilate synthase component I compare
PS417_19870 -6.4 -4.0 flagellar rod assembly protein FlgJ compare
PS417_19840 -6.4 -14.1 flagellar cap protein FliD compare
PS417_02005 -6.4 -10.1 glutamate synthase compare
PS417_26745 -6.4 -3.4 methionine biosynthesis protein MetW compare
PS417_02000 -6.3 -4.4 glutamate synthase compare
PS417_01640 -6.3 -2.9 histidine kinase compare
PS417_01635 -6.2 -3.5 nitrogen regulation protein NR(I) compare
PS417_19730 -6.2 -2.4 flagellar biosynthesis protein FliR compare
PS417_00185 -6.2 -2.8 tryptophan synthase subunit beta compare
PS417_20105 -6.2 -22.0 glycosyl transferase compare
PS417_26740 -6.2 -6.6 homoserine acetyltransferase compare
PS417_19725 -6.1 -5.8 flagellar biosynthesis protein FlhB compare
PS417_21565 -6.0 -3.6 flagellar basal body rod protein FlgC compare
PS417_00455 -5.9 -1.8 hypothetical protein compare
PS417_27870 -5.8 -2.7 ATP-dependent DNA helicase RecG compare
PS417_21390 -5.8 -5.5 hypothetical protein compare
PS417_01570 -5.8 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23545 -5.7 -1.9 gamma-glutamyl kinase compare
PS417_12855 -5.6 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28220 -5.6 -2.2 LysR family transcriptional regulator compare
PS417_01850 -5.6 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19690 -5.5 -3.9 histidine kinase compare
PS417_19765 -5.3 -6.5 flagellar hook-length control protein compare
PS417_19710 -5.3 -12.9 flagellar biosynthesis protein FlhA compare
PS417_00900 -5.3 -2.3 4-aminobutyrate aminotransferase compare
PS417_17215 -5.3 -2.4 peptidylprolyl isomerase compare
PS417_05595 -5.3 -8.4 ornithine carbamoyltransferase compare
PS417_19860 -5.3 -12.1 flagellar hook protein FlgL compare
PS417_00385 -5.3 -0.9 Fur family transcriptional regulator compare
PS417_08620 -5.2 -0.9 hypothetical protein compare
PS417_19790 -5.2 -3.4 ATP synthase compare
PS417_19885 -5.2 -2.2 flagellar basal body rod protein FlgG compare
PS417_19825 -5.1 -6.9 ATPase AAA compare
PS417_05575 -5.1 -6.8 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_20635 -5.1 -0.9 ABC transporter ATP-binding protein compare
PS417_19645 -5.0 -2.1 chemotaxis protein compare
PS417_23380 -4.9 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_19745 -4.9 -4.5 flagellar assembly protein FliO compare
PS417_26995 -4.9 -7.2 phosphoserine phosphatase compare
PS417_23110 -4.8 -8.1 2-isopropylmalate synthase compare
PS417_22565 -4.8 -0.8 formyltetrahydrofolate deformylase compare
PS417_19795 -4.7 -5.2 flagellar assembly protein FliH compare
PS417_19835 -4.7 -1.2 flagellar biosynthesis protein FliS compare
PS417_23810 -4.7 -8.1 acetolactate synthase 3 catalytic subunit compare
PS417_01955 -4.7 -9.8 peptidase compare
PS417_04420 -4.7 -7.6 histidinol dehydrogenase compare
PS417_24745 -4.7 -1.7 gamma-glutamyl phosphate reductase compare
PS417_05975 -4.7 -0.8 chemotaxis protein CheW compare
PS417_18310 -4.6 -1.4 hypothetical protein compare
PS417_06895 -4.6 -3.1 DNA-binding protein compare
PS417_19880 -4.6 -4.4 flagellar basal body L-ring protein compare
PS417_26985 -4.6 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24710 -4.6 -5.9 lipoprotein compare
PS417_27135 -4.5 -0.8 glutamine synthetase compare
PS417_06680 -4.5 -7.5 nuclease PIN compare
PS417_21555 -4.4 -6.3 flagellar hook protein FlgE compare
PS417_27795 -4.4 -0.8 orotate phosphoribosyltransferase compare
PS417_08200 -4.4 -2.0 hypothetical protein compare
PS417_18530 -4.3 -4.2 O-succinylhomoserine sulfhydrylase compare
PS417_19660 -4.3 -4.2 cobalamin biosynthesis protein CobQ compare
PS417_19630 -4.3 -2.8 LuxR family transcriptional regulator compare
PS417_25710 -4.3 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_19805 -4.3 -3.3 flagellar M-ring protein FliF compare
PS417_02415 -4.3 -3.9 phosphoserine phosphatase compare
PS417_21125 -4.2 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_23995 -4.2 -0.7 preprotein translocase subunit SecG compare
PS417_09085 -4.1 -1.0 hypothetical protein compare
PS417_19625 -4.1 -3.6 histidine kinase compare
PS417_06375 -4.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_14065 -4.1 -8.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00755 -4.1 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_08580 -4.1 -6.4 histidine kinase compare
PS417_01915 -4.0 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17610 -4.0 -1.7 AsnC family transcriptional regulator compare
PS417_03380 -3.9 -1.0 hypothetical protein compare
PS417_18690 -3.9 -3.1 aromatic amino acid aminotransferase compare
PS417_00160 -3.9 -3.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_01580 -3.9 -0.9 imidazole glycerol phosphate synthase compare
PS417_00180 -3.9 -1.5 tryptophan synthase subunit alpha compare
PS417_20985 -3.9 -1.6 porin compare
PS417_26890 -3.8 -4.1 dihydroxy-acid dehydratase compare
PS417_23210 -3.8 -1.3 serine acetyltransferase compare
PS417_27195 -3.7 -0.9 N-acetylglutamate synthase compare
PS417_19820 -3.7 -4.5 histidine kinase compare
PS417_09245 -3.7 -1.5 recombinase RdgC compare
PS417_19850 -3.6 -5.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_18570 -3.6 -4.3 peptidoglycan-binding protein compare
PS417_08205 -3.6 -3.5 acetyltransferase compare
PS417_01560 -3.5 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_08135 -3.5 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04900 -3.5 -9.4 amino acid ABC transporter substrate-binding protein compare
PS417_02520 -3.5 -5.2 chemotaxis protein compare
PS417_19665 -3.5 -2.3 flagellar motor protein MotD compare
PS417_13140 -3.4 -1.7 oxidoreductase compare
PS417_19735 -3.4 -2.9 flagellar biosynthesis protein FliQ compare
PS417_05075 -3.4 -8.6 serine dehydratase compare
PS417_22450 -3.4 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_16490 -3.4 -1.2 cell division protein FtsK compare
PS417_19600 -3.4 -0.8 exonuclease compare
PS417_19865 -3.3 -4.8 flagellar hook protein FlgK compare
PS417_04375 -3.3 -1.6 ABC transporter ATP-binding protein compare
PS417_08230 -3.3 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21430 -3.3 -2.0 3-oxoacyl-ACP synthase compare
PS417_15100 -3.3 -2.0 BatB protein compare
PS417_19830 -3.3 -2.2 flagellar assembly protein FliT compare
PS417_23370 -3.2 -3.5 protoheme IX farnesyltransferase compare
PS417_22445 -3.2 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_21705 -3.2 -3.8 arginine N-succinyltransferase compare
PS417_00510 -3.2 -0.8 membrane protein compare
PS417_27010 -3.2 -8.1 threonine dehydratase compare
PS417_08225 -3.2 -3.2 acetolactate synthase compare
PS417_02510 -3.1 -1.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02895 -3.1 -1.5 precorrin-6Y C5,15-methyltransferase compare
PS417_21655 -3.1 -0.7 aspartate kinase compare
PS417_08190 -3.1 -7.9 membrane protein compare
PS417_15090 -3.1 -2.5 hypothetical protein compare
PS417_20650 -3.0 -6.4 hypothetical protein compare
PS417_01990 -3.0 -4.8 cell division protein compare
PS417_22780 -3.0 -1.9 XRE family transcriptional regulator compare
PS417_08335 -2.9 -1.5 hypothetical protein compare
PS417_12355 -2.9 -1.9 magnesium chelatase compare
PS417_08195 -2.9 -5.6 hypothetical protein compare
PS417_20095 -2.9 -7.4 hypothetical protein compare
PS417_22620 -2.9 -3.3 pyruvate kinase compare
PS417_22795 -2.9 -1.4 exclusion suppressor FxsA compare
PS417_23915 -2.9 -2.8 pantoate--beta-alanine ligase compare
PS417_08090 -2.9 -0.7 3-oxoacyl-ACP reductase compare
PS417_20160 -2.9 -1.9 cysteine synthase compare
PS417_22190 -2.9 -6.4 diguanylate cyclase compare
PS417_21480 -2.8 -1.2 23S rRNA pseudouridylate synthase compare
PS417_19705 -2.8 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_01565 -2.8 -1.8 imidazole glycerol phosphate synthase compare
PS417_12290 -2.8 -4.9 sulfite reductase compare
PS417_08125 -2.8 -0.5 prephenate dehydratase compare
PS417_08170 -2.8 -8.8 capsular biosynthesis protein compare
PS417_21320 -2.7 -3.5 transcriptional regulator compare
PS417_02210 -2.7 -3.0 diguanylate cyclase compare
PS417_07170 -2.7 -3.2 hypothetical protein compare
PS417_06200 -2.7 -3.8 protein-PII uridylyltransferase compare
PS417_20090 -2.7 -5.0 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_21580 -2.6 -5.9 chemotaxis protein CheW compare
PS417_24835 -2.6 -3.1 hypothetical protein compare
PS417_04650 -2.6 -0.6 D-alanine--D-alanine ligase compare
PS417_28230 -2.6 -2.5 transcriptional regulator compare
PS417_25175 -2.6 -2.7 hypothetical protein compare
PS417_03465 -2.6 -1.4 type III secretion protein compare
PS417_26990 -2.6 -0.6 RNA pyrophosphohydrolase compare
PS417_26730 -2.6 -0.6 pyrroline-5-carboxylate reductase compare
PS417_25715 -2.6 -2.4 anthranilate phosphoribosyltransferase compare
PS417_23770 -2.6 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_24615 -2.6 -0.9 hypothetical protein compare
PS417_05080 -2.6 -4.6 LysR family transcriptional regulator compare
PS417_23170 -2.6 -0.9 FeS assembly protein IscX compare
PS417_01920 -2.5 -0.6 ATP-dependent protease subunit HslV compare
PS417_02175 -2.5 -2.0 transcriptional regulator compare
PS417_16990 -2.5 -4.3 acyl-CoA dehydrogenase compare
PS417_19685 -2.5 -4.4 protein phosphatase compare
PS417_26225 -2.5 -2.9 electron transfer flavoprotein subunit beta compare
PS417_00175 -2.5 -0.9 CigR compare
PS417_06645 -2.4 -6.7 RNA polymerase-associated protein RapA compare
PS417_04915 -2.4 -1.3 glutamine ABC transporter ATP-binding protein compare
PS417_12520 -2.4 -2.2 hypothetical protein compare
PS417_02440 -2.4 -2.7 flagellar motor protein MotB compare
PS417_23025 -2.4 -5.0 murein transglycosylase compare
PS417_12310 -2.4 -4.1 methionine synthase compare
PS417_25225 -2.4 -1.6 MFS transporter compare
PS417_00085 -2.3 -1.3 16S rRNA methyltransferase compare
PS417_03165 -2.3 -3.1 hypothetical protein compare
PS417_04585 -2.3 -1.3 hypothetical protein compare
PS417_04080 -2.3 -1.8 peptide ABC transporter substrate-binding protein compare
PS417_28265 -2.3 -1.8 pyridoxamine kinase compare
PS417_24575 -2.3 -0.9 hypothetical protein compare
PS417_08185 -2.3 -3.1 glycosyl transferase compare
PS417_07575 -2.3 -3.7 multifunctional fatty acid oxidation complex subunit alpha compare


Specific Phenotypes

For 9 genes in this experiment