Experiment set19IT062 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 200 mM

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.6 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -6.0 -4.1 Argininosuccinate lyase compare
PP_2999 -5.8 -1.4 Glyoxalase family protein compare
PP_4679 -5.4 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1269 -5.2 -1.3 Universal stress protein family compare
PP_5185 -5.1 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -4.9 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -4.7 -4.4 Ornithine carbamoyltransferase compare
PP_2631 -4.7 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0083 -4.7 -8.0 tryptophan synthase beta chain compare
PP_0735 -4.6 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0001 -4.4 -2.1 probable chromosome-partitioning protein compare
PP_1022 -4.3 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_t10 -4.3 -1.5 tRNA-Pro compare
PP_4902 -4.3 -2.9 Oligoribonuclease compare
PP_4268 -4.2 -1.5 nucleoid-associated broad specificity regulator compare
PP_0289 -4.2 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_1468 -4.2 -2.7 Tyrosine recombinase XerD compare
PP_0422 -4.1 -3.8 Indole-3-glycerol phosphate synthase compare
PP_2402 -4.0 -2.6 putative Sensor histidine kinase compare
PP_4828 -4.0 -1.4 Precorrin-8X methylmutase compare
PP_1575 -4.0 -1.9 conserved protein of unknown function compare
PP_5706 -3.8 -2.6 Sec translocation complex - SecG subunit compare
PP_1995 -3.8 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -3.8 -5.7 Branched-chain-amino-acid aminotransferase compare
PP_1985 -3.7 -4.0 3-isopropylmalate dehydratase large subunit compare
PP_5423 -3.7 -2.9 conserved membrane protein of unknown function compare
PP_2328 -3.7 -6.3 Phosphoadenosine phosphosulfate reductase compare
PP_2378 -3.7 -2.6 Fe/S biogenesis protein NfuA compare
PP_0967 -3.6 -5.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0417 -3.6 -10.6 Anthranilate synthase component 1 compare
PP_4909 -3.5 -6.9 phosphoserine phosphatase compare
PP_1988 -3.5 -5.2 3-isopropylmalate dehydrogenase compare
PP_1088 -3.5 -7.9 Argininosuccinate synthase compare
PP_5346 -3.5 -6.2 pyruvate carboxylase subunit B compare
PP_5097 -3.4 -9.0 homoserine O-acetyltransferase compare
PP_4785 -3.4 -5.3 conserved exported protein of unknown function compare
PP_5155 -3.4 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4680 -3.3 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1237 -3.3 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0965 -3.2 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -3.2 -6.4 Histidinol dehydrogenase compare
PP_0420 -3.2 -6.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_t11 -3.2 -2.6 tRNA-Lys compare
PP_5014 -3.2 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4678 -3.2 -7.5 Ketol-acid reductoisomerase compare
PP_4874 -3.1 -1.5 50S ribosomal protein L9 compare
PP_5674 -3.1 -3.2 conserved protein of unknown function compare
PP_3999 -3.1 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5748 -3.1 -1.0 cytochrome c heme lyase subunit compare
PP_2327 -3.1 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2370 -3.1 -2.3 conserved protein of unknown function compare
PP_5348 -3.0 -5.6 Transcriptional regulator, LysR family compare
PP_5098 -3.0 -4.0 methionine biosynthesis protein MetW compare
PP_0082 -3.0 -3.8 tryptophan synthase alpha chain compare
PP_0421 -3.0 -5.7 Anthranilate phosphoribosyltransferase compare
PP_0801 -3.0 -1.2 conserved exported protein of unknown function compare
PP_0291 -2.9 -3.1 conserved protein of unknown function compare
PP_4966 -2.9 -3.0 transcriptional regulator of methionine metabolism compare
PP_5303 -2.9 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4890 -2.8 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5015 -2.8 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1829 -2.8 -2.2 Hydrolase, alpha/beta fold family compare
PP_1074 -2.7 -2.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_2371 -2.7 -5.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1381 -2.7 -1.3 4-carboxymuconolactone decarboxylase compare
PP_1428 -2.7 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_0065 -2.6 -3.2 NAD-binding component of TrK potassium transporter compare
PP_5289 -2.6 -2.4 Acetylglutamate kinase compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_1231 -2.5 -3.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -2.5 -1.2 pyrroline-5-carboxylate reductase compare
PP_4696 -2.5 -3.9 Nitrogen regulation protein NR(I) compare
PP_2459 -2.5 -1.7 ribose pyranase compare
PP_4517 -2.5 -1.9 conserved protein of unknown function compare
PP_2107 -2.5 -2.0 conserved protein of unknown function compare
PP_4364 -2.4 -1.6 putative Anti-sigma F factor antagonist compare
PP_3417 -2.4 -2.8 D-gluconate transporter compare
PP_5347 -2.4 -5.2 pyruvate carboxylase subunit A compare
PP_1654 -2.3 -3.0 cysteine synthase B compare
PP_4004 -2.3 -3.5 DNA translocase FtsK compare
PP_2001 -2.2 -4.1 O-succinylhomoserine sulfhydrylase compare
PP_0293 -2.2 -1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1898 -2.2 -2.2 MotA/TolQ/ExbB proton channel family protein compare
PP_2336 -2.2 -4.8 aconitate hydratase 1 compare
PP_4479 -2.2 -3.0 arginine N-succinyltransferase, subunit beta compare
PP_4471 -2.1 -3.3 Magnesium transporter compare
PP_5321 -2.1 -4.1 two-component system sensory histidine kinase compare
PP_1912 -2.1 -3.1 Phosphate acyltransferase compare
PP_5128 -2.1 -4.2 Dihydroxy-acid dehydratase compare
PP_1025 -2.1 -6.0 2-isopropylmalate synthase compare
PP_2136 -2.1 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0393 -2.0 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1186 -2.0 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_4226 -2.0 -2.8 conserved protein of unknown function compare
PP_0152 -2.0 -1.4 conserved exported protein of unknown function compare
PP_0999 -2.0 -2.6 carbamate kinase compare
PP_0989 -2.0 -1.3 glycine cleavage system H protein 1 compare
PP_4984 -2.0 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0888 -1.9 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_5217 -1.9 -5.1 Polyphosphate kinase compare
PP_1678 -1.9 -2.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1216 -1.9 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2203 -1.9 -2.0 conserved protein of unknown function compare
PP_1734 -1.9 -2.5 Probable septum site-determining protein MinC compare
PP_5267 -1.8 -1.2 putative cytochrome c5 compare
PP_3198 -1.8 -1.3 Ferredoxin, 2Fe-2S compare
PP_5508 -1.8 -1.2 conserved protein of unknown function compare
PP_1733 -1.8 -2.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4693 -1.8 -4.2 RNA polymerase-binding transcription factor DksA compare
PP_3770 -1.8 -1.8 conserved protein of unknown function compare
PP_2820 -1.8 -2.3 HTH-type transcriptional regulator nfxB compare
PP_2145 -1.8 -2.2 beta-N-acetylglucosaminidase compare
PP_1362 -1.8 -2.5 pyruvate kinase II compare
PP_0833 -1.7 -1.2 queuine tRNA-ribosyltransferase compare
PP_4555 -1.7 -1.9 conserved protein of unknown function compare
PP_1673 -1.7 -3.0 cobyrinate a,c-diamide synthase compare
PP_0719 -1.7 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0406 -1.7 -2.1 Nucleotidyltransferase family protein compare
PP_4895 -1.7 -2.2 tRNA dimethylallyltransferase compare
PP_5313 -1.7 -1.2 DNA-binding protein HU-alpha compare
PP_5453 -1.7 -1.0 conserved protein of unknown function compare
PP_3946 -1.7 -1.0 HTH-type transcriptional repressor NicR compare
PP_4994 -1.6 -3.0 conserved protein of unknown function compare
PP_1935 -1.6 -1.1 Transcriptional regulator, Cro/CI family compare
PP_4660 -1.6 -2.4 Transcriptional regulator, LysR family compare
PP_2168 -1.6 -4.6 Transaldolase compare
PP_2388 -1.6 -1.6 Transporter, LysE family compare
PP_5558 -1.6 -2.5 putative transcriptional xre family of phage origin compare
PP_4124 -1.6 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_5075 -1.6 -5.2 glutamate synthase (NADPH) beta subunit compare
PP_0363 -1.6 -4.2 8-amino-7-oxononanoate synthase compare
PP_5350 -1.6 -2.9 Transcriptional regulator, RpiR family compare
PP_5628 -1.6 -1.2 conserved protein of unknown function compare
PP_4120 -1.6 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_2765 -1.6 -1.3 putative Sulfonate monooxygenase MsuD compare
PP_2793 -1.6 -1.3 Acyl-CoA dehydrogenase family protein compare
PP_2550 -1.6 -1.5 putative transcriptional regulatory protein compare
PP_4964 -1.5 -2.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1099 -1.5 -1.3 Cold shock protein CapB compare
PP_1656 -1.5 -5.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1041 -1.5 -1.8 twin arginine protein export complex subunit compare
PP_3938 -1.5 -1.5 conserved protein of unknown function compare
PP_0640 -1.5 -2.4 conserved protein of unknown function compare
PP_4824 -1.5 -3.8 Sensor histidine kinase/response regulator compare
PP_4227 -1.5 -1.1 conserved protein of unknown function compare
PP_0949 -1.5 -3.2 putative ATP-binding protein UPF0042 compare
PP_5449 -1.5 -2.8 conserved exported protein of unknown function compare
PP_1550 -1.4 -2.4 Transcriptional regulator, Cro/CI family compare
PP_1987 -1.4 -1.1 Methlytransferase, UbiE/COQ5 family compare
PP_5338 -1.4 -1.5 aspartate ammonia-lyase compare
PP_1528 -1.4 -0.8 conserved protein of unknown function compare
PP_0261 -1.4 -2.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0673 -1.4 -0.8 conserved protein of unknown function compare
PP_5090 -1.4 -1.7 putative cell division protein compare
PP_1986 -1.4 -1.7 3-isopropylmalate dehydratase small subunit compare
PP_1906 -1.3 -1.4 ribosomal large subunit pseudouridine synthase C compare
PP_5114 -1.3 -1.6 putative adenine methyltransferase compare
PP_0365 -1.3 -3.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2373 -1.3 -2.4 conserved protein of unknown function compare
PP_0366 -1.3 -2.1 dethiobiotin synthetase compare
PP_2414 -1.3 -1.3 conserved exported protein of unknown function compare
PP_4847 -1.3 -1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_0273 -1.3 -1.0 conserved protein of unknown function compare
PP_4699 -1.2 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3407 -1.2 -1.8 conserved protein of unknown function compare
PP_0666 -1.2 -1.6 conserved protein of unknown function compare
PP_5499 -1.2 -2.2 conserved protein of unknown function compare
PP_2002 -1.2 -1.8 putative enzyme compare
PP_0125 -1.2 -1.0 putative cytochrome c-type protein compare
PP_5639 -1.2 -4.4 conserved exported protein of unknown function compare
PP_1629 -1.2 -2.8 Protein RecA compare
PP_0513 -1.2 -1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5320 -1.2 -2.0 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_2750 -1.2 -1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4131 -1.2 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_1204 -1.2 -1.9 putative Lipoprotein compare
PP_3094 -1.2 -2.2 conserved exported protein of unknown function compare
PP_2132 -1.2 -1.6 Universal stress protein compare
PP_0362 -1.2 -4.3 Biotin synthase compare
PP_4121 -1.2 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_5256 -1.2 -2.2 Cyclic nucleotide-binding protein compare
PP_4362 -1.1 -1.6 conserved protein of unknown function compare
PP_3164 -1.1 -1.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4722 -1.1 -2.0 Transcription elongation factor GreA compare
PP_0114 -1.1 -2.4 methionine ABC transporter ATP-binding protein compare
PP_1304 -1.1 -2.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0368 -1.1 -4.4 putative Acyl-CoA dehydrogenase compare
PP_1344 -1.1 -1.1 conserved protein of unknown function compare
PP_4880 -1.1 -3.9 exoribonuclease R compare
PP_0794 -1.1 -2.3 1-phosphofructokinase monomer compare
PP_0440 -1.1 -1.7 Elongation factor Tu-A compare
PP_2928 -1.1 -2.2 Saccharopine dehydrogenase compare
PP_2756 -1.1 -1.9 conserved protein of unknown function compare
PP_3662 -1.1 -2.8 conserved protein of unknown function compare
PP_3443 -1.1 -3.0 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_2307 -1.1 -1.0 conserved protein of unknown function compare
PP_4581 -1.1 -1.8 putative amidotransferase compare
PP_3614 -1.1 -2.2 conserved membrane protein of unknown function compare
PP_3233 -1.1 -2.0 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress D-Glucose across organisms