Experiment set19IT062 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 200 mM

200 most detrimental genes:

  gene name fitness t score description  
PP_5328 +2.2 4.8 putative phosphate transport system permease protein compare
PP_3726 +2.0 2.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_4942 +1.9 3.3 conserved protein of unknown function compare
PP_0593 +1.8 2.3 putative ribosome-binding factor compare
PP_1208 +1.7 3.8 conserved protein of unknown function, SlyX family compare
PP_3551 +1.7 2.4 DNA-binding response regulator, LuxR family compare
PP_1164 +1.7 3.3 Transcriptional regulator, LysR family compare
PP_4262 +1.6 2.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1713 +1.5 3.2 Transcriptional regulator PcaQ compare
PP_4814 +1.5 5.1 ATP-dependent protease La domain protein compare
PP_1513 +1.5 4.8 Ribosomal RNA small subunit methyltransferase J compare
PP_4504 +1.4 2.9 conserved exported protein of unknown function compare
PP_5191 +1.4 2.2 conserved exported protein of unknown function compare
PP_4937 +1.4 4.8 toluene tolerance protein compare
PP_3365 +1.4 1.8 Acetolactate synthase compare
PP_0978 +1.3 3.9 conserved protein of unknown function compare
PP_3903 +1.3 2.7 conserved protein of unknown function compare
PP_2718 +1.3 2.1 arsenic resistance transcriptional regulator compare
PP_5337 +1.2 4.3 LysR family transcriptional regulator compare
PP_3580 +1.2 1.2 conserved protein of unknown function compare
PP_2387 +1.2 3.6 conserved protein of unknown function compare
PP_1609 +1.2 4.0 conserved protein of unknown function compare
PP_2322 +1.2 4.4 Major outer membrane lipoprotein compare
PP_1322 +1.2 1.2 putative Lipoprotein compare
PP_5525 +1.1 2.2 conserved exported protein of unknown function compare
PP_0775 +1.1 1.4 conserved protein of unknown function compare
PP_0957 +1.1 1.7 D-arabinose 5-phosphate isomerase compare
PP_1055 +1.1 0.9 Type II secretion pathway protein GspN compare
PP_0250 +1.1 3.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5569 +1.1 3.6 protein of unknown function of phage origin compare
PP_5486 +1.1 1.5 conserved protein of unknown function compare
PP_4196 +1.0 2.3 conserved exported protein of unknown function compare
PP_1045 +1.0 2.0 Type II secretion pathway protein XcpP compare
PP_3052 +1.0 1.3 conserved protein of unknown function compare
PP_5393 +1.0 1.3 putative metal-binding chaperone compare
PP_2280 +1.0 2.2 conserved protein of unknown function compare
PP_5008 +1.0 1.5 Poly granule-associated protein compare
PP_1442 +1.0 1.7 conserved protein of unknown function compare
PP_4561 +0.9 1.0 stress response protein compare
PP_5495 +0.9 1.5 protein of unknown function compare
PP_2291 +0.9 2.8 conserved protein of unknown function compare
PP_2705 +0.9 1.8 conserved protein of unknown function compare
PP_1268 +0.9 2.4 putative HtrA suppressor protein sohA compare
PP_1529 +0.9 3.8 Probable cysteine desulfurase compare
PP_2907 +0.9 1.7 DNA-binding response regulator compare
PP_5198 +0.9 1.8 conserved protein of unknown function compare
PP_5243 +0.9 4.4 putative hydrolase compare
PP_5038 +0.9 2.5 conserved lipoprotein of unknown function compare
PP_2633 +0.9 1.2 conserved protein of unknown function compare
PP_4253 +0.9 1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4373 +0.9 5.6 Transcriptional regulator FleQ compare
PP_2695 +0.9 2.6 Transcriptional regulator, LysR family compare
PP_0874 +0.9 1.5 conserved protein of unknown function compare
PP_3239 +0.9 2.1 putative cointegrate resolution protein T Tn4652 compare
PP_5071 +0.9 2.6 putative DNA-binding transcriptional regulator compare
PP_3447 +0.9 1.0 conserved membrane protein of unknown function compare
PP_5473 +0.9 1.5 putative transcriptional regulator, LuxR family compare
PP_5083 +0.9 2.9 putative Type IV pili biogenesis protein PilM compare
PP_1319 +0.8 2.7 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2274 +0.8 2.4 conserved protein of unknown function compare
PP_5446 +0.8 2.7 protein of unknown function compare
PP_1999 +0.8 1.7 membrane protein required for colicin V production compare
PP_0153 +0.8 0.8 hypothetical protein compare
PP_5445 +0.8 1.7 conserved protein of unknown function compare
PP_4266 +0.8 1.7 Adenine phosphoribosyltransferase compare
PP_0164 +0.8 2.5 conserved protein of unknown function compare
PP_1352 +0.8 1.3 UPF0234 protein PP_1352 compare
PP_1038 +0.8 1.6 conserved protein of unknown function compare
PP_5705 +0.8 1.0 protein of unknown function compare
PP_1122 +0.8 0.9 OmpA family protein compare
PP_0855 +0.8 1.5 conserved protein of unknown function compare
PP_5140 +0.8 2.2 Transcriptional regulator, MerR family compare
PP_5084 +0.8 3.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4944 +0.8 2.0 Carbamoyltransferase compare
PP_5100 +0.8 1.6 dITP/XTP pyrophosphatase compare
PP_5224 +0.8 1.7 conserved protein of unknown function compare
PP_0627 +0.8 1.0 conserved protein of unknown function compare
PP_2159 +0.8 2.3 Copper-binding protein, plastocyanin/azurin family compare
PP_2331 +0.8 3.4 conserved membrane protein of unknown function compare
PP_5604 +0.8 1.2 putative subtilisin-like serine protease compare
PP_4846 +0.8 2.3 L-amino acid N-acyltransferase compare
PP_4199 +0.8 0.9 putative Lipoprotein compare
PP_0984 +0.8 1.8 conserved membrane protein of unknown function compare
PP_2122 +0.8 1.2 molybdenum cofactor biosynthesis protein B compare
PP_1128 +0.8 1.9 OmpA family protein compare
PP_5145 +0.8 5.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0804 +0.7 2.8 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0901 +0.7 1.9 DNA-binding response regulator compare
PP_4215 +0.7 1.9 pyoverdine biosynthesis related protein compare
PP_3989 +0.7 1.3 DNA-cytosine methyltransferase compare
PP_5017 +0.7 0.8 Sec-independent protein translocase protein TatB compare
PP_2449 +0.7 2.6 conserved protein of unknown function compare
PP_4707 +0.7 1.2 OsmY-related protein compare
PP_4792 +0.7 2.1 conserved exported protein of unknown function compare
PP_5475 +0.7 0.5 conserved protein of unknown function compare
PP_2290 +0.7 1.5 conserved protein of unknown function compare
PP_2777 +0.7 2.9 putative Acyl carrier protein compare
PP_4904 +0.7 2.6 Flagellar motor rotation protein compare
PP_1623 +0.7 3.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_3203 +0.7 2.6 Major facilitator family transporter compare
PP_3415 +0.7 2.2 Transcriptional regulator, LacI family conserved
PP_1097 +0.7 0.8 Methionine--tRNA ligase compare
PP_5505 +0.7 1.1 conserved transmembrane protein of unknown function compare
PP_4256 +0.7 1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4946 +0.7 2.8 sodium/L-proline transporter compare
PP_1300 +0.7 2.0 putative amino acid ABC transporter - ATP-binding subunit compare
PP_5218 +0.7 2.1 DedA family protein compare
PP_1907 +0.7 2.1 Hydrolase, haloacid dehalogenase-like family compare
PP_2441 +0.7 1.0 conserved protein of unknown function compare
PP_2757 +0.7 1.9 putative Sugar-binding protein compare
PP_3824 +0.7 1.1 conserved exported protein of unknown function compare
PP_1598 +0.7 1.9 regulatory intramembrane protein RIP zinc protease compare
PP_3098 +0.7 0.7 conserved protein of unknown function compare
PP_5568 +0.7 3.0 conserved membrane protein of unknown function compare
PP_2504 +0.7 0.9 putative tautomerase K2 compare
PP_2798 +0.7 1.8 putative Oxidoreductase compare
PP_3244 +0.7 1.8 Magnesium transporter, MgtC family compare
PP_2204 +0.7 1.9 copper resistance protein B compare
PP_0962 +0.7 1.4 toluene-tolerance protein compare
PP_0685 +0.7 1.2 conserved protein of unknown function compare
PP_1895 +0.7 1.9 putative ABC transporter - ATP binding subunit compare
PP_0632 +0.7 2.7 leader peptidase/N-methyltransferase compare
PP_2046 +0.6 1.4 Transcriptional regulator, LysR family compare
PP_3792 +0.6 1.0 conserved protein of unknown function compare
PP_1497 +0.6 2.6 Transcriptional regulator, TetR family compare
PP_0166 +0.6 4.5 HlyD family secretion protein compare
PP_0505 +0.6 1.8 conserved protein of unknown function compare
PP_3735 +0.6 1.5 ABC transporter ATP-binding protein compare
PP_4045 +0.6 1.0 conserved protein of unknown function compare
PP_1828 +0.6 1.5 conserved protein of unknown function compare
PP_2308 +0.6 2.0 putative Acyl-CoA thioesterase II compare
PP_2726 +0.6 1.5 conserved membrane protein of unknown function compare
PP_3969 +0.6 2.1 Response regulator compare
PP_3625 +0.6 1.4 Transporter, LysE family compare
PP_5666 +0.6 1.5 putative microcin B17-like processing protein, McbB family compare
PP_1559 +0.6 1.4 Holin compare
PP_2498 +0.6 1.4 conserved protein of unknown function compare
PP_2330 +0.6 1.5 conserved protein of unknown function compare
PP_4391 +0.6 2.0 flagellar basal-body rod protein FlgB compare
PP_3449 +0.6 0.9 conserved exported protein of unknown function compare
PP_1968 +0.6 2.3 TetR family transcriptional regulator compare
PP_2434 +0.6 2.2 conserved protein of unknown function compare
PP_5702 +0.6 0.9 conserved protein of unknown function compare
PP_3808 +0.6 1.1 Antibiotic synthesis protein MbtH compare
PP_5270 +0.6 1.9 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0197 +0.6 1.6 conserved protein of unknown function compare
PP_3074 +0.6 2.5 D-beta-hydroxybutyrate permease compare
PP_5687 +0.6 1.1 putative permease of the major facilitator superfamily compare
PP_4797 +0.6 0.6 conserved protein of unknown function compare
PP_5575 +0.6 0.9 conserved protein of unknown function compare
PP_4706 +0.6 1.9 conserved protein of unknown function compare
PP_5621 +0.6 0.8 protein of unknown function compare
PP_0806 +0.6 5.0 putative Surface adhesion protein compare
PP_t57 +0.6 1.0 tRNA-Arg compare
PP_1480 +0.6 1.8 conserved protein of unknown function compare
PP_1254 +0.6 2.2 XenA compare
PP_2404 +0.6 1.5 conserved exported protein of unknown function compare
PP_3926 +0.6 0.5 short-chain dehydrogenase compare
PP_5051 +0.6 1.1 conserved protein of unknown function compare
PP_1512 +0.6 1.9 conserved protein of unknown function compare
PP_5274 +0.6 0.6 conserved protein of unknown function compare
PP_3773 +0.6 1.2 conserved protein of unknown function compare
PP_4286 +0.6 2.4 allantoinase compare
PP_0346 +0.6 3.1 putative Heptose kinase WapQ compare
PP_2795 +0.6 1.8 AMP-binding domain protein compare
PP_1082 +0.6 1.6 bacterioferritin compare
PP_1445 +0.6 3.0 carbohydrate-selective porin compare
PP_0893 +0.6 0.8 ThiJ/PfpI family protein compare
PP_4879 +0.6 1.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5241 +0.6 0.7 DNA-binding response regulator, LuxR family compare
PP_2333 +0.6 1.6 GntR family transcriptional regulator compare
PP_4488 +0.6 1.8 conserved exported protein of unknown function compare
PP_5298 +0.6 1.7 putative glutamine amidotransferase compare
PP_2031 +0.6 1.4 conserved protein of unknown function compare
PP_0619 +0.6 2.6 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_2229 +0.6 0.9 putative K(+)/H(+) antiporter subunit C compare
PP_2147 +0.6 1.9 conserved exported protein of unknown function compare
PP_5278 +0.6 2.5 4-guanidinobutyraldehyde dehydrogenase compare
PP_1293 +0.6 0.4 molybdopterin synthase small subunit compare
PP_1466 +0.6 1.7 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_4534 +0.6 1.8 conserved protein of unknown function compare
PP_2557 +0.6 1.6 Sensory box protein compare
PP_5456 +0.5 0.5 conserved protein of unknown function compare
PP_0948 +0.5 0.8 Phosphocarrier protein HPr compare
PP_0630 +0.5 0.6 DNA gyrase inhibitor YacG compare
PP_4211 +0.5 1.6 outer membrane pyoverdine efflux protein compare
PP_5594 +0.5 0.8 conserved protein of unknown function compare
PP_0282 +0.5 1.9 L-arginine ABC transporter - periplasmic binding subunit compare
PP_0416 +0.5 3.0 Phosphoglycolate phosphatase compare
PP_4354 +0.5 0.8 flagellar export apparatus subunit compare
PP_4073 +0.5 1.2 conserved exported protein of unknown function compare
PP_1981 +0.5 1.5 tRNA-dihydrouridine synthase C compare
PP_2357 +0.5 1.1 putative Type 1 pili protein CsuB compare
PP_1390 +0.5 0.9 conserved exported protein of unknown function compare
PP_5717 +0.5 0.9 conserved protein of unknown function compare
PP_2129 +0.5 1.3 conserved protein of unknown function compare
PP_2196 +0.5 1.0 agmatinase compare
PP_0972 +0.5 1.0 UPF0213 protein PP_0972 compare
PP_5633 +0.5 1.2 conserved protein of unknown function compare
PP_0086 +0.5 0.8 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress D-Glucose across organisms