Experiment set19IT061 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27865 -5.6 -5.1 LysR family transcriptional regulator compare
PS417_22565 -4.9 -1.7 formyltetrahydrofolate deformylase compare
PS417_01915 -4.2 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27870 -3.1 -5.4 ATP-dependent DNA helicase RecG compare
PS417_08125 -2.9 -0.9 prephenate dehydratase compare
PS417_08135 -2.7 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24585 -2.7 -10.8 AMP nucleosidase compare
PS417_18310 -2.6 -2.7 hypothetical protein compare
PS417_21630 -2.5 -2.8 magnesium transporter compare
PS417_21430 -2.3 -2.2 3-oxoacyl-ACP synthase compare
PS417_02415 -2.3 -4.6 phosphoserine phosphatase compare
PS417_04375 -2.2 -2.8 ABC transporter ATP-binding protein compare
PS417_06680 -2.1 -7.7 nuclease PIN compare
PS417_27795 -2.0 -1.2 orotate phosphoribosyltransferase compare
PS417_27800 -2.0 -3.0 exodeoxyribonuclease III compare
PS417_23025 -1.8 -5.9 murein transglycosylase compare
PS417_09915 -1.8 -2.4 hypothetical protein compare
PS417_19425 -1.8 -1.3 allantoicase compare
PS417_00185 -1.7 -4.1 tryptophan synthase subunit beta compare
PS417_07470 -1.7 -2.0 hypothetical protein compare
PS417_06375 -1.6 -0.9 deoxycytidine triphosphate deaminase compare
PS417_15095 -1.6 -1.6 hypothetical protein compare
PS417_00755 -1.6 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_26985 -1.6 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22450 -1.6 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_04595 -1.5 -2.7 cell division protein MraZ compare
PS417_22570 -1.5 -1.1 H-NS histone compare
PS417_26730 -1.5 -0.9 pyrroline-5-carboxylate reductase compare
PS417_16555 -1.5 -2.0 cupin compare
PS417_24155 -1.5 -1.8 ATP-binding protein compare
PS417_07640 -1.5 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_13075 -1.4 -1.7 hypothetical protein compare
PS417_26260 -1.4 -2.0 hypothetical protein compare
PS417_00085 -1.3 -2.7 16S rRNA methyltransferase compare
PS417_12805 -1.3 -7.3 glycogen branching protein compare
PS417_01855 -1.3 -2.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_01580 -1.3 -1.6 imidazole glycerol phosphate synthase compare
PS417_06205 -1.3 -6.0 methionine aminopeptidase compare
PS417_08090 -1.3 -1.2 3-oxoacyl-ACP reductase compare
PS417_24745 -1.3 -3.2 gamma-glutamyl phosphate reductase compare
PS417_08155 -1.3 -1.6 integration host factor subunit beta compare
PS417_22210 -1.3 -1.5 AraC family transcriptional regulator compare
PS417_12855 -1.2 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06600 -1.2 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23380 -1.2 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_23375 -1.2 -2.0 cytochrome C oxidase compare
PS417_28070 -1.2 -6.6 phosphate ABC transporter ATP-binding protein compare
PS417_23545 -1.2 -2.5 gamma-glutamyl kinase compare
PS417_16510 -1.2 -3.6 Clp protease ClpX compare
PS417_02225 -1.2 -2.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23770 -1.2 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_02555 -1.1 -7.2 exoribonuclease R compare
PS417_27315 -1.1 -1.3 hypothetical protein compare
PS417_20985 -1.1 -1.2 porin compare
PS417_25825 -1.1 -1.5 sulfurtransferase compare
PS417_16490 -1.1 -1.4 cell division protein FtsK compare
PS417_27475 -1.1 -1.8 membrane protein compare
PS417_02630 -1.1 -2.4 NAD synthetase compare
PS417_12355 -1.1 -2.0 magnesium chelatase compare
PS417_23810 -1.0 -5.6 acetolactate synthase 3 catalytic subunit compare
PS417_02895 -1.0 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_23805 -1.0 -3.0 acetolactate synthase 3 regulatory subunit compare
PS417_22445 -1.0 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_06825 -1.0 -1.4 hypothetical protein compare
PS417_23385 -1.0 -5.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_03000 -1.0 -1.4 translation initiation factor Sui1 compare
PS417_27245 -1.0 -3.0 aminotransferase DegT compare
PS417_07710 -1.0 -3.3 membrane protein compare
PS417_27425 -1.0 -4.5 exopolyphosphatase compare
PS417_13205 -1.0 -1.5 isochorismate-pyruvate lyase compare
PS417_15400 -0.9 -1.2 hypothetical protein compare
PS417_08620 -0.9 -1.0 hypothetical protein compare
PS417_25030 -0.9 -2.4 hypothetical protein compare
PS417_14425 -0.9 -2.4 alkylhydroperoxidase compare
PS417_25830 -0.9 -5.3 serine/threonine protein kinase compare
PS417_26155 -0.9 -2.1 hypothetical protein compare
PS417_00220 -0.9 -1.1 hypothetical protein compare
PS417_08540 -0.9 -2.0 RNA helicase compare
PS417_24705 -0.9 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_15105 -0.9 -3.9 membrane protein compare
PS417_05500 -0.9 -1.9 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_02975 -0.9 -2.2 3-dehydroquinate dehydratase compare
PS417_14515 -0.9 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_12870 -0.9 -1.8 enoyl-CoA hydratase compare
PS417_28080 -0.9 -5.8 phosphate ABC transporter permease compare
PS417_01290 -0.9 -1.4 ADP-ribose diphosphatase compare
PS417_20365 -0.9 -2.7 Cro/Cl family transcriptional regulator compare
PS417_17125 -0.9 -2.3 transcriptional regulator compare
PS417_23390 -0.9 -3.1 ubiquinol oxidase subunit II compare
PS417_21480 -0.8 -0.8 23S rRNA pseudouridylate synthase compare
PS417_23370 -0.8 -2.9 protoheme IX farnesyltransferase compare
PS417_19350 -0.8 -2.2 GTP cyclohydrolase compare
PS417_22260 -0.8 -1.8 segregation and condensation protein B compare
PS417_02105 -0.8 -1.3 acyl carrier protein compare
PS417_13145 -0.8 -1.6 50S ribosomal protein L21 compare
PS417_17330 -0.8 -3.3 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_25840 -0.8 -5.4 SpoVR family protein compare
PS417_26275 -0.8 -1.9 glycine/betaine ABC transporter substrate-binding protein compare
PS417_02485 -0.8 -1.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04385 -0.8 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_26390 -0.8 -1.3 acyltransferase compare
PS417_19620 -0.8 -1.9 hypothetical protein compare
PS417_03100 -0.8 -0.9 pilus assembly protein compare
PS417_22175 -0.8 -1.3 amino acid transporter LysE compare
PS417_14080 -0.8 -2.2 hypothetical protein compare
PS417_08585 -0.8 -1.9 ATPase AAA compare
PS417_28350 -0.8 -3.5 fatty acid methyltransferase compare
PS417_27135 -0.8 -0.7 glutamine synthetase compare
PS417_27640 -0.8 -0.9 TetR family transcriptional regulator compare
PS417_12005 -0.8 -1.9 hypothetical protein compare
PS417_11320 -0.8 -1.5 hypothetical protein compare
PS417_08945 -0.7 -4.3 heat shock protein 90 compare
PS417_02475 -0.7 -1.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_24500 -0.7 -1.9 DEAD/DEAH box helicase compare
PS417_06895 -0.7 -1.9 DNA-binding protein compare
PS417_16005 -0.7 -1.6 ATPase compare
PS417_02745 -0.7 -1.0 FMN-dependent NADH-azoreductase compare
PS417_27910 -0.7 -2.1 PppA compare
PS417_19190 -0.7 -2.1 BolA family transcriptional regulator compare
PS417_05815 -0.7 -2.0 recombinase RecA compare
PS417_15135 -0.7 -1.0 hypothetical protein compare
PS417_06400 -0.7 -2.1 succinylglutamate desuccinylase compare
PS417_14655 -0.7 -0.9 lysine transporter LysE compare
PS417_19430 -0.7 -2.3 ureidoglycolate hydrolase compare
PS417_17095 -0.7 -2.2 spore coat protein compare
PS417_18560 -0.7 -3.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23580 -0.7 -1.1 peptidylprolyl isomerase compare
PS417_00455 -0.7 -1.0 hypothetical protein compare
PS417_15225 -0.7 -2.6 alpha/beta hydrolase compare
PS417_01030 -0.7 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_07170 -0.7 -2.2 hypothetical protein compare
PS417_20025 -0.7 -1.0 alpha-ribazole phosphatase compare
PS417_25175 -0.7 -1.8 hypothetical protein compare
PS417_27195 -0.7 -0.8 N-acetylglutamate synthase compare
PS417_15100 -0.7 -1.1 BatB protein compare
PS417_17505 -0.7 -2.5 LuxR family transcriptional regulator compare
PS417_01635 -0.7 -3.2 nitrogen regulation protein NR(I) compare
PS417_24310 -0.7 -1.9 ankyrin compare
PS417_01560 -0.7 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_13165 -0.7 -2.0 peroxidase compare
PS417_11530 -0.7 -1.8 amidase compare
PS417_11390 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_02000 -0.7 -4.5 glutamate synthase compare
PS417_01885 -0.7 -1.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_26990 -0.7 -0.6 RNA pyrophosphohydrolase compare
PS417_23900 -0.7 -3.4 poly(A) polymerase compare
PS417_19305 -0.7 -1.8 acireductone dioxygenase compare
PS417_15090 -0.7 -2.0 hypothetical protein compare
PS417_13965 -0.7 -2.5 acetoin utilization protein compare
PS417_20880 -0.7 -1.4 GntR family transcriptional regulator compare
PS417_15085 -0.6 -2.3 ATPase AAA compare
PS417_02370 -0.6 -0.9 ADP-ribose pyrophosphatase compare
PS417_11585 -0.6 -1.1 LuxR family transcriptional regulator compare
PS417_17070 -0.6 -1.1 RNA polymerase subunit sigma-24 compare
PS417_27945 -0.6 -1.2 type VI secretion protein ImpA compare
PS417_14835 -0.6 -2.2 amidase compare
PS417_10060 -0.6 -1.1 hypothetical protein compare
PS417_07575 -0.6 -1.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_10680 -0.6 -1.7 enoyl-CoA hydratase compare
PS417_22520 -0.6 -0.7 histidine kinase compare
PS417_04475 -0.6 -2.1 hypothetical protein compare
PS417_12795 -0.6 -3.4 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_11195 -0.6 -2.8 NAD(P)H-quinone oxidoreductase compare
PS417_04390 -0.6 -1.9 toluene tolerance protein compare
PS417_26445 -0.6 -1.6 ArsR family transcriptional regulator compare
PS417_17350 -0.6 -1.4 copper resistance protein CopD compare
PS417_18545 -0.6 -1.7 cell division protein compare
PS417_15770 -0.6 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_17480 -0.6 -1.8 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_01140 -0.6 -2.0 taurine ABC transporter permease compare
PS417_17190 -0.6 -2.6 MarR family transcriptional regulator compare
PS417_25835 -0.6 -3.5 hypothetical protein compare
PS417_04410 -0.6 -1.7 hypothetical protein compare
PS417_09200 -0.6 -2.1 ABC transporter compare
PS417_13735 -0.6 -1.0 hypothetical protein compare
PS417_06635 -0.6 -0.9 ferredoxin compare
PS417_24650 -0.6 -0.5 membrane protein compare
PS417_11725 -0.6 -1.8 peptidase M19 compare
PS417_02005 -0.6 -3.4 glutamate synthase compare
PS417_02820 -0.6 -0.9 urea ABC transporter ATP-binding protein compare
PS417_07865 -0.6 -0.7 hypothetical protein compare
PS417_19955 -0.6 -1.3 hypothetical protein compare
PS417_27295 -0.6 -2.1 hypothetical protein compare
PS417_27445 -0.6 -3.5 membrane protein compare
PS417_05555 -0.6 -1.7 amino acid ABC transporter permease compare
PS417_00180 -0.6 -1.0 tryptophan synthase subunit alpha compare
PS417_09125 -0.6 -2.3 (Fe-S)-binding protein compare
PS417_18810 -0.6 -1.3 hypothetical protein compare
PS417_21830 -0.6 -1.6 TetR family transcriptional regulator compare
PS417_04060 -0.6 -2.0 dipeptide ABC transporter, permease component (from data) compare
PS417_26805 -0.6 -0.6 cell division protein FtsE compare
PS417_21655 -0.6 -0.5 aspartate kinase compare
PS417_24620 -0.6 -1.4 hypothetical protein compare
PS417_19010 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_12310 -0.6 -3.1 methionine synthase compare
PS417_21160 -0.6 -2.4 membrane protein compare
PS417_08580 -0.6 -3.0 histidine kinase compare
PS417_12020 -0.6 -2.0 peptidase compare
PS417_22795 -0.6 -1.1 exclusion suppressor FxsA compare
PS417_03455 -0.6 -0.8 type III secretion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments