Experiment set19IT060 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21570 -11.0 -4.8 flagellar basal body rod protein FlgB compare
PS417_19740 -10.3 -4.1 flagellar biosynthesis protein flip compare
PS417_01575 -9.2 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_21585 -9.2 -6.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21565 -9.1 -4.5 flagellar basal body rod protein FlgC compare
PS417_19730 -9.1 -3.5 flagellar biosynthesis protein FliR compare
PS417_19765 -9.0 -9.4 flagellar hook-length control protein compare
PS417_25720 -8.9 -5.4 anthranilate synthase component II compare
PS417_21595 -8.8 -3.8 flagellar biosynthesis protein FlgN compare
PS417_19725 -8.6 -4.8 flagellar biosynthesis protein FlhB compare
PS417_19795 -8.5 -7.5 flagellar assembly protein FliH compare
PS417_19710 -8.1 -12.4 flagellar biosynthesis protein FlhA compare
PS417_18600 -8.0 -3.1 isopropylmalate isomerase compare
PS417_19695 -8.0 -7.3 flagellar biosynthesis sigma factor compare
PS417_19735 -8.0 -4.5 flagellar biosynthesis protein FliQ compare
PS417_19785 -8.0 -3.3 flagellar biogenesis protein compare
PS417_27835 -7.9 -7.2 endoribonuclease compare
PS417_19880 -7.8 -7.2 flagellar basal body L-ring protein compare
PS417_04415 -7.8 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01570 -7.8 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_19860 -7.5 -13.6 flagellar hook protein FlgL compare
PS417_25725 -7.5 -13.5 anthranilate synthase component I compare
PS417_23805 -7.5 -4.3 acetolactate synthase 3 regulatory subunit compare
PS417_26740 -7.4 -7.2 homoserine acetyltransferase compare
PS417_19825 -7.4 -8.4 ATPase AAA compare
PS417_02510 -7.1 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19755 -7.1 -1.6 flagellar motor switch protein FliM compare
PS417_01635 -6.8 -5.6 nitrogen regulation protein NR(I) compare
PS417_19665 -6.8 -3.7 flagellar motor protein MotD compare
PS417_19690 -6.8 -3.9 histidine kinase compare
PS417_18585 -6.7 -4.7 3-isopropylmalate dehydrogenase compare
PS417_19745 -6.7 -5.4 flagellar assembly protein FliO compare
PS417_19650 -6.7 -3.8 chemotaxis protein CheW compare
PS417_01855 -6.7 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_19705 -6.6 -2.9 flagellar biosynthesis regulator FlhF compare
PS417_19620 -6.5 -2.5 hypothetical protein compare
PS417_19800 -6.5 -2.1 flagellar motor switch protein FliG compare
PS417_18560 -6.5 -5.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_05635 -6.4 -6.6 membrane protein compare
PS417_27040 -6.3 -2.3 3-phosphoglycerate dehydrogenase compare
PS417_21575 -6.2 -5.8 chemotaxis protein compare
PS417_00185 -6.2 -3.6 tryptophan synthase subunit beta compare
PS417_02280 -6.2 -2.4 GlcNAc-PI de-N-acetylase compare
PS417_21555 -6.1 -8.3 flagellar hook protein FlgE compare
PS417_02175 -6.0 -3.2 transcriptional regulator compare
PS417_19885 -6.0 -1.8 flagellar basal body rod protein FlgG compare
PS417_06200 -5.9 -5.7 protein-PII uridylyltransferase compare
PS417_01565 -5.9 -3.0 imidazole glycerol phosphate synthase compare
PS417_19840 -5.8 -8.7 flagellar cap protein FliD compare
PS417_19870 -5.8 -3.4 flagellar rod assembly protein FlgJ compare
PS417_20105 -5.8 -21.3 glycosyl transferase compare
PS417_19865 -5.7 -6.8 flagellar hook protein FlgK compare
PS417_19660 -5.6 -4.3 cobalamin biosynthesis protein CobQ compare
PS417_19850 -5.6 -7.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01850 -5.5 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -5.5 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -5.5 -7.6 histidinol dehydrogenase compare
PS417_12855 -5.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01955 -5.5 -9.2 peptidase compare
PS417_19830 -5.4 -2.9 flagellar assembly protein FliT compare
PS417_09210 -5.4 -2.1 TetR family transcriptional regulator compare
PS417_08230 -5.4 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23110 -5.3 -8.2 2-isopropylmalate synthase compare
PS417_18595 -5.2 -3.6 3-isopropylmalate dehydratase compare
PS417_21510 -5.2 -2.3 histidine kinase compare
PS417_23800 -5.2 -9.9 ketol-acid reductoisomerase compare
PS417_18540 -5.1 -3.5 colicin V production CvpA compare
PS417_00045 -5.1 -1.6 glycerol acyltransferase compare
PS417_01640 -5.0 -3.8 histidine kinase compare
PS417_26995 -5.0 -7.1 phosphoserine phosphatase compare
PS417_05595 -4.9 -10.1 ornithine carbamoyltransferase compare
PS417_19645 -4.8 -2.6 chemotaxis protein compare
PS417_18530 -4.8 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_12290 -4.7 -7.1 sulfite reductase compare
PS417_14940 -4.7 -1.5 LysR family transcriptional regulator compare
PS417_24370 -4.7 -1.1 (2Fe-2S)-binding protein compare
PS417_21430 -4.7 -2.3 3-oxoacyl-ACP synthase compare
PS417_22565 -4.7 -1.0 formyltetrahydrofolate deformylase compare
PS417_05975 -4.6 -1.0 chemotaxis protein CheW compare
PS417_19835 -4.5 -1.4 flagellar biosynthesis protein FliS compare
PS417_27135 -4.5 -1.0 glutamine synthetase compare
PS417_18310 -4.5 -1.7 hypothetical protein compare
PS417_03560 -4.5 -2.0 GTP-binding protein compare
PS417_19675 -4.4 -4.7 chemotaxis protein CheY compare
PS417_09725 -4.4 -6.9 transporter compare
PS417_14065 -4.4 -11.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27795 -4.3 -1.0 orotate phosphoribosyltransferase compare
PS417_08220 -4.3 -1.0 epimerase compare
PS417_25715 -4.3 -4.4 anthranilate phosphoribosyltransferase compare
PS417_02415 -4.3 -5.6 phosphoserine phosphatase compare
PS417_05365 -4.3 -1.9 FAD-binding protein compare
PS417_25710 -4.2 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_19790 -4.2 -2.6 ATP synthase compare
PS417_23995 -4.2 -0.9 preprotein translocase subunit SecG compare
PS417_16490 -4.1 -1.3 cell division protein FtsK compare
PS417_19805 -4.1 -3.8 flagellar M-ring protein FliF compare
PS417_23580 -4.1 -1.3 peptidylprolyl isomerase compare
PS417_24460 -4.1 -2.4 hypothetical protein compare
PS417_08580 -4.0 -7.2 histidine kinase compare
PS417_00755 -4.0 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_06375 -4.0 -0.9 deoxycytidine triphosphate deaminase compare
PS417_09085 -4.0 -1.2 hypothetical protein compare
PS417_21390 -4.0 -3.0 hypothetical protein compare
PS417_08170 -3.9 -9.2 capsular biosynthesis protein compare
PS417_21630 -3.9 -2.3 magnesium transporter compare
PS417_01580 -3.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_20160 -3.8 -2.7 cysteine synthase compare
PS417_19625 -3.8 -4.1 histidine kinase compare
PS417_04440 -3.8 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_18690 -3.7 -3.5 aromatic amino acid aminotransferase compare
PS417_12565 -3.7 -2.3 2-dehydro-3-deoxygluconokinase compare
PS417_24710 -3.7 -5.5 lipoprotein compare
PS417_01290 -3.7 -1.6 ADP-ribose diphosphatase compare
PS417_21480 -3.7 -1.4 23S rRNA pseudouridylate synthase compare
PS417_27195 -3.7 -1.1 N-acetylglutamate synthase compare
PS417_15105 -3.7 -7.3 membrane protein compare
PS417_26745 -3.6 -3.2 methionine biosynthesis protein MetW compare
PS417_08195 -3.6 -8.5 hypothetical protein compare
PS417_24835 -3.6 -3.0 hypothetical protein compare
PS417_13800 -3.6 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_25645 -3.5 -5.4 peptidase M23 compare
PS417_20775 -3.5 -4.1 coproporphyrinogen III oxidase compare
PS417_27315 -3.5 -1.1 hypothetical protein compare
PS417_22445 -3.5 -3.7 ATP-dependent DNA helicase RuvB compare
PS417_01560 -3.5 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_21035 -3.5 -9.4 multidrug transporter compare
PS417_20650 -3.4 -7.4 hypothetical protein compare
PS417_08225 -3.4 -3.2 acetolactate synthase compare
PS417_04585 -3.3 -1.8 hypothetical protein compare
PS417_01605 -3.3 -1.5 phosphoglycerate mutase compare
PS417_22450 -3.3 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_27870 -3.2 -2.8 ATP-dependent DNA helicase RecG compare
PS417_04475 -3.2 -4.2 hypothetical protein compare
PS417_27435 -3.1 -6.4 polyphosphate kinase compare
PS417_20665 -3.1 -7.8 hypothetical protein compare
PS417_01990 -3.1 -5.9 cell division protein compare
PS417_21125 -3.1 -4.3 phosphoadenosine phosphosulfate reductase compare
PS417_27245 -3.0 -3.9 aminotransferase DegT compare
PS417_26695 -3.0 -0.9 uracil phosphoribosyltransferase compare
PS417_04365 -3.0 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_19820 -3.0 -3.6 histidine kinase compare
PS417_19655 -3.0 -2.3 chemotaxis protein CheW compare
PS417_27010 -3.0 -5.3 threonine dehydratase compare
PS417_27595 -3.0 -2.5 recombinase XerC compare
PS417_27305 -3.0 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_07820 -3.0 -2.0 transposase compare
PS417_15875 -2.9 -2.3 LuxR family transcriptional regulator compare
PS417_02665 -2.9 -8.6 branched-chain amino acid ABC transporter permease compare
PS417_27800 -2.9 -2.0 exodeoxyribonuclease III compare
PS417_20095 -2.9 -8.5 hypothetical protein compare
PS417_26890 -2.9 -2.8 dihydroxy-acid dehydratase compare
PS417_15770 -2.9 -1.3 pyridoxine 5'-phosphate oxidase compare
PS417_19605 -2.8 -1.3 hypothetical protein compare
PS417_02210 -2.8 -3.1 diguanylate cyclase compare
PS417_27585 -2.8 -2.1 diaminopimelate epimerase compare
PS417_23380 -2.8 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_08190 -2.8 -9.5 membrane protein compare
PS417_13445 -2.8 -1.5 D-aminopeptidase compare
PS417_15085 -2.8 -5.4 ATPase AAA compare
PS417_12310 -2.8 -6.9 methionine synthase compare
PS417_08135 -2.7 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08090 -2.7 -0.8 3-oxoacyl-ACP reductase compare
PS417_04375 -2.7 -2.3 ABC transporter ATP-binding protein compare
PS417_23900 -2.6 -6.9 poly(A) polymerase compare
PS417_20610 -2.6 -1.4 hypothetical protein compare
PS417_01950 -2.6 -4.0 malate dehydrogenase compare
PS417_00085 -2.6 -2.0 16S rRNA methyltransferase compare
PS417_04650 -2.6 -0.8 D-alanine--D-alanine ligase compare
PS417_08125 -2.6 -0.6 prephenate dehydratase compare
PS417_07620 -2.6 -1.6 beta-hexosaminidase compare
PS417_20090 -2.6 -5.5 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_20705 -2.6 -3.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_26730 -2.6 -0.8 pyrroline-5-carboxylate reductase compare
PS417_02805 -2.6 -1.1 urease subunit gamma compare
PS417_21560 -2.6 -2.3 flagellar basal body rod modification protein FlgD compare
PS417_01710 -2.5 -3.1 histidine utilization repressor compare
PS417_18590 -2.5 -2.2 SAM-dependent methyltransferase compare
PS417_07470 -2.5 -1.2 hypothetical protein compare
PS417_20655 -2.5 -6.5 group 1 glycosyl transferase compare
PS417_07870 -2.5 -1.8 hypothetical protein compare
PS417_17240 -2.4 -2.1 trigger factor compare
PS417_08540 -2.4 -1.9 RNA helicase compare
PS417_22990 -2.4 -1.5 iron dicitrate transport regulator FecR compare
PS417_19760 -2.4 -3.7 flagellar basal body protein FliL compare
PS417_28510 -2.4 -4.5 chromosome partitioning protein compare
PS417_08200 -2.3 -2.6 hypothetical protein compare
PS417_02975 -2.3 -3.8 3-dehydroquinate dehydratase compare
PS417_02655 -2.3 -5.5 amino acid ABC transporter substrate-binding protein compare
PS417_25175 -2.3 -2.7 hypothetical protein compare
PS417_02675 -2.3 -2.6 ABC transporter ATP-binding protein compare
PS417_23025 -2.3 -4.2 murein transglycosylase compare
PS417_15095 -2.2 -2.5 hypothetical protein compare
PS417_10720 -2.2 -6.3 chemotaxis protein CheY compare
PS417_15100 -2.2 -1.7 BatB protein compare
PS417_02660 -2.2 -7.7 branched-chain amino acid transporter permease subunit LivH compare
PS417_17610 -2.2 -1.4 AsnC family transcriptional regulator compare
PS417_16465 -2.2 -3.6 sirohydrochlorin ferrochelatase compare
PS417_05010 -2.2 -1.9 IclR family transcriptional regulator compare
PS417_02555 -2.2 -8.8 exoribonuclease R compare
PS417_26370 -2.2 -2.1 RNA helicase compare


Specific Phenotypes

For 6 genes in this experiment