Experiment set19IT059 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_04375 -3.6 -2.5 ABC transporter ATP-binding protein compare
PS417_27865 -3.2 -4.4 LysR family transcriptional regulator compare
PS417_22565 -3.0 -1.6 formyltetrahydrofolate deformylase compare
PS417_22520 -2.9 -2.6 histidine kinase compare
PS417_08125 -2.8 -1.0 prephenate dehydratase compare
PS417_04650 -2.7 -1.2 D-alanine--D-alanine ligase compare
PS417_03260 -2.7 -1.8 5S ribosomal RNA compare
PS417_26990 -2.6 -1.3 RNA pyrophosphohydrolase compare
PS417_02415 -2.4 -4.7 phosphoserine phosphatase compare
PS417_22450 -2.4 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_21630 -2.3 -3.4 magnesium transporter compare
PS417_06680 -2.3 -8.2 nuclease PIN compare
PS417_22445 -2.2 -4.0 ATP-dependent DNA helicase RuvB compare
PS417_27800 -2.2 -3.0 exodeoxyribonuclease III compare
PS417_07640 -2.1 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_00180 -2.1 -3.5 tryptophan synthase subunit alpha compare
PS417_01605 -2.1 -2.0 phosphoglycerate mutase compare
PS417_19835 -2.1 -2.6 flagellar biosynthesis protein FliS compare
PS417_04440 -2.1 -2.4 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_20985 -2.0 -2.5 porin compare
PS417_02980 -2.0 -1.9 chemotaxis protein compare
PS417_23770 -2.0 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_24745 -2.0 -3.8 gamma-glutamyl phosphate reductase compare
PS417_11585 -2.0 -3.3 LuxR family transcriptional regulator compare
PS417_02975 -1.9 -3.9 3-dehydroquinate dehydratase compare
PS417_08135 -1.9 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05815 -1.7 -4.3 recombinase RecA compare
PS417_23380 -1.7 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_12855 -1.6 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08540 -1.6 -3.0 RNA helicase compare
PS417_21480 -1.6 -1.8 23S rRNA pseudouridylate synthase compare
PS417_08130 -1.5 -2.8 aspartate aminotransferase compare
PS417_00185 -1.5 -2.9 tryptophan synthase subunit beta compare
PS417_21595 -1.5 -2.8 flagellar biosynthesis protein FlgN compare
PS417_07470 -1.5 -1.3 hypothetical protein compare
PS417_27425 -1.5 -6.0 exopolyphosphatase compare
PS417_06375 -1.5 -0.9 deoxycytidine triphosphate deaminase compare
PS417_26985 -1.5 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02555 -1.4 -8.6 exoribonuclease R compare
PS417_01915 -1.4 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15105 -1.4 -4.4 membrane protein compare
PS417_20855 -1.4 -1.4 hypothetical protein compare
PS417_27135 -1.4 -1.0 glutamine synthetase compare
PS417_06685 -1.4 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_27870 -1.4 -3.2 ATP-dependent DNA helicase RecG compare
PS417_03100 -1.4 -1.1 pilus assembly protein compare
PS417_22990 -1.4 -1.2 iron dicitrate transport regulator FecR compare
PS417_14315 -1.4 -1.9 2,5-dioxovalerate dehydrogenase compare
PS417_20705 -1.3 -2.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_04380 -1.3 -0.9 ABC transporter permease compare
PS417_26730 -1.3 -0.8 pyrroline-5-carboxylate reductase compare
PS417_27595 -1.3 -2.9 recombinase XerC compare
PS417_00045 -1.3 -2.2 glycerol acyltransferase compare
PS417_19850 -1.3 -7.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_10275 -1.3 -1.2 histidine kinase compare
PS417_23810 -1.3 -6.9 acetolactate synthase 3 catalytic subunit compare
PS417_18310 -1.3 -1.8 hypothetical protein compare
PS417_27300 -1.3 -0.9 cell division protein ZapA compare
PS417_24585 -1.3 -6.5 AMP nucleosidase compare
PS417_19350 -1.3 -3.7 GTP cyclohydrolase compare
PS417_23025 -1.2 -5.0 murein transglycosylase compare
PS417_09235 -1.2 -1.2 molecular chaperone compare
PS417_20610 -1.2 -1.8 hypothetical protein compare
PS417_24155 -1.2 -1.6 ATP-binding protein compare
PS417_24935 -1.2 -1.2 hypothetical protein compare
PS417_20715 -1.2 -2.5 cytochrome Cbb3 compare
PS417_07710 -1.2 -4.4 membrane protein compare
PS417_21430 -1.2 -1.9 3-oxoacyl-ACP synthase compare
PS417_25315 -1.2 -3.4 membrane protein compare
PS417_06245 -1.1 -1.2 zinc metallopeptidase RseP compare
PS417_23915 -1.1 -2.4 pantoate--beta-alanine ligase compare
PS417_19785 -1.1 -3.0 flagellar biogenesis protein compare
PS417_25390 -1.1 -3.1 MFS transporter compare
PS417_19730 -1.1 -3.2 flagellar biosynthesis protein FliR compare
PS417_23995 -1.1 -0.8 preprotein translocase subunit SecG compare
PS417_17980 -1.1 -1.7 ABC transporter permease compare
PS417_22840 -1.1 -1.0 tRNA-Met compare
PS417_24500 -1.1 -3.2 DEAD/DEAH box helicase compare
PS417_02280 -1.1 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_19705 -1.1 -1.6 flagellar biosynthesis regulator FlhF compare
PS417_19860 -1.0 -8.3 flagellar hook protein FlgL compare
PS417_12805 -1.0 -7.1 glycogen branching protein compare
PS417_01850 -1.0 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_07455 -1.0 -2.3 glutamine amidotransferase compare
PS417_06710 -1.0 -1.9 beta-ketoadipyl CoA thiolase compare
PS417_06600 -1.0 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19425 -1.0 -1.0 allantoicase compare
PS417_14425 -1.0 -1.9 alkylhydroperoxidase compare
PS417_27245 -1.0 -3.3 aminotransferase DegT compare
PS417_27585 -1.0 -1.9 diaminopimelate epimerase compare
PS417_22210 -1.0 -2.1 AraC family transcriptional regulator compare
PS417_19955 -1.0 -1.9 hypothetical protein compare
PS417_23490 -1.0 -1.4 dihydrofolate reductase compare
PS417_20700 -1.0 -5.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_28070 -1.0 -6.2 phosphate ABC transporter ATP-binding protein compare
PS417_23805 -1.0 -3.3 acetolactate synthase 3 regulatory subunit compare
PS417_07865 -1.0 -1.8 hypothetical protein compare
PS417_28295 -1.0 -2.1 glutamine synthetase compare
PS417_20785 -1.0 -2.7 transcriptional regulator compare
PS417_27875 -1.0 -4.1 histidine kinase compare
PS417_06205 -0.9 -4.8 methionine aminopeptidase compare
PS417_22895 -0.9 -4.6 tyrosine recombinase XerD compare
PS417_00375 -0.9 -1.9 membrane protein compare
PS417_24535 -0.9 -1.9 membrane protein compare
PS417_18560 -0.9 -3.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01600 -0.9 -2.8 peptidase M23 compare
PS417_08155 -0.9 -0.8 integration host factor subunit beta compare
PS417_19840 -0.9 -5.6 flagellar cap protein FliD compare
PS417_00175 -0.9 -1.0 CigR compare
PS417_15110 -0.9 -3.0 protein BatD compare
PS417_10390 -0.9 -2.1 RNA polymerase subunit sigma24 compare
PS417_19765 -0.9 -6.9 flagellar hook-length control protein compare
PS417_16490 -0.9 -0.7 cell division protein FtsK compare
PS417_27640 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_02225 -0.9 -2.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07560 -0.9 -0.8 universal stress protein UspA compare
PS417_26685 -0.9 -2.0 hypothetical protein compare
PS417_23250 -0.9 -4.2 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_00455 -0.9 -1.1 hypothetical protein compare
PS417_00810 -0.9 -1.7 RNA polymerase sigma factor compare
PS417_04050 -0.9 -1.2 peptide ABC transporter ATP-binding protein compare
PS417_18025 -0.9 -2.3 cytochrome C compare
PS417_03875 -0.9 -2.0 membrane protein compare
PS417_21575 -0.9 -4.5 chemotaxis protein compare
PS417_10265 -0.8 -2.4 peptidase compare
PS417_07620 -0.8 -1.1 beta-hexosaminidase compare
PS417_10665 -0.8 -1.9 hypothetical protein compare
PS417_19665 -0.8 -2.2 flagellar motor protein MotD compare
PS417_21210 -0.8 -1.8 amidotransferase compare
PS417_13510 -0.8 -0.9 polyketide cyclase compare
PS417_04420 -0.8 -5.1 histidinol dehydrogenase compare
PS417_27815 -0.8 -1.1 hypothetical protein compare
PS417_17425 -0.8 -2.7 hypothetical protein compare
PS417_06145 -0.8 -0.8 hypothetical protein compare
PS417_04390 -0.8 -2.3 toluene tolerance protein compare
PS417_19865 -0.8 -5.1 flagellar hook protein FlgK compare
PS417_21560 -0.8 -3.7 flagellar basal body rod modification protein FlgD compare
PS417_03300 -0.8 -2.2 alanine acetyltransferase compare
PS417_22855 -0.8 -2.4 ssDNA exonuclease RecJ compare
PS417_13140 -0.8 -1.1 oxidoreductase compare
PS417_23385 -0.8 -4.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -0.8 -1.2 cytochrome C oxidase compare
PS417_02485 -0.8 -2.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_10425 -0.8 -1.5 hypothetical protein compare
PS417_27515 -0.8 -2.5 heme biosynthesis protein HemY compare
PS417_16005 -0.8 -2.5 ATPase compare
PS417_09325 -0.8 -3.1 peptidase S41 compare
PS417_27305 -0.8 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_01630 -0.8 -0.9 hypothetical protein compare
PS417_27690 -0.8 -2.0 XRE family transcriptional regulator compare
PS417_27195 -0.8 -0.9 N-acetylglutamate synthase compare
PS417_05160 -0.8 -0.9 DNA polymerase III subunit chi compare
PS417_26655 -0.8 -2.4 chemotaxis protein compare
PS417_13425 -0.8 -1.8 cupin compare
PS417_22575 -0.8 -4.7 exonuclease I compare
PS417_18600 -0.8 -1.5 isopropylmalate isomerase compare
PS417_03560 -0.8 -0.9 GTP-binding protein compare
PS417_24630 -0.8 -2.1 ATP-binding protein compare
PS417_22570 -0.8 -0.7 H-NS histone compare
PS417_21570 -0.8 -4.0 flagellar basal body rod protein FlgB compare
PS417_18395 -0.8 -1.6 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_19885 -0.8 -2.7 flagellar basal body rod protein FlgG compare
PS417_00380 -0.8 -3.3 zinc ABC transporter ATP-binding protein compare
PS417_15085 -0.8 -2.4 ATPase AAA compare
PS417_10455 -0.8 -1.9 membrane protein compare
PS417_16715 -0.7 -1.2 DoxX family protein compare
PS417_01565 -0.7 -3.2 imidazole glycerol phosphate synthase compare
PS417_05635 -0.7 -4.2 membrane protein compare
PS417_12310 -0.7 -4.0 methionine synthase compare
PS417_02000 -0.7 -5.1 glutamate synthase compare
PS417_18585 -0.7 -2.6 3-isopropylmalate dehydrogenase compare
PS417_02365 -0.7 -1.3 hypothetical protein compare
PS417_14105 -0.7 -2.3 6-O-methylguanine DNA methyltransferase compare
PS417_06200 -0.7 -3.1 protein-PII uridylyltransferase compare
PS417_04595 -0.7 -1.6 cell division protein MraZ compare
PS417_04385 -0.7 -1.7 organic solvent ABC transporter substrate-binding protein compare
PS417_26530 -0.7 -0.8 hypothetical protein compare
PS417_23775 -0.7 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_00405 -0.7 -3.6 DNA polymerase I compare
PS417_27075 -0.7 -2.1 thiol-disulfide isomerase compare
PS417_16720 -0.7 -1.0 membrane protein compare
PS417_19880 -0.7 -2.7 flagellar basal body L-ring protein compare
PS417_25400 -0.7 -4.3 bacterioferritin compare
PS417_21555 -0.7 -5.6 flagellar hook protein FlgE compare
PS417_04865 -0.7 -1.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_15090 -0.7 -1.8 hypothetical protein compare
PS417_18595 -0.7 -3.2 3-isopropylmalate dehydratase compare
PS417_11175 -0.7 -1.2 AraC family transcriptional regulator compare
PS417_09465 -0.7 -2.8 FMN reductase compare
PS417_16080 -0.7 -1.5 AraC family transcriptional regulator compare
PS417_28080 -0.7 -4.8 phosphate ABC transporter permease compare
PS417_23160 -0.7 -1.0 50S rRNA methyltransferase compare
PS417_12020 -0.7 -2.3 peptidase compare
PS417_19675 -0.7 -2.8 chemotaxis protein CheY compare
PS417_19790 -0.7 -2.2 ATP synthase compare
PS417_15135 -0.7 -1.3 hypothetical protein compare
PS417_11945 -0.7 -0.9 hypothetical protein compare
PS417_12535 -0.7 -1.7 nitrilase compare
PS417_03045 -0.7 -1.3 hypothetical protein compare
PS417_27745 -0.7 -3.1 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments