Experiment set19IT056 for Pseudomonas putida KT2440

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
PP_1635 -7.7 -3.1 DNA-binding response regulator conserved
PP_5659 -7.2 -3.7 protein of unknown function compare
PP_0356 -6.8 -4.7 malate synthase G compare
PP_1985 -6.4 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.3 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5267 -5.8 -2.7 putative cytochrome c5 compare
PP_1986 -5.8 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.6 -3.9 tryptophan synthase alpha chain compare
PP_0967 -5.6 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5303 -5.4 -6.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4116 -5.4 -12.5 isocitrate lyase compare
PP_1493 -5.3 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2001 -5.2 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_3365 -5.2 -1.2 Acetolactate synthase compare
PP_2327 -5.1 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0184 -5.0 -6.9 Argininosuccinate lyase compare
PP_3519 -5.0 -1.2 putative Lipoprotein compare
PP_0290 -4.9 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5453 -4.9 -1.9 conserved protein of unknown function compare
PP_0291 -4.9 -4.3 conserved protein of unknown function compare
PP_1695 -4.9 -9.4 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_5017 -4.9 -1.1 Sec-independent protein translocase protein TatB compare
PP_3511 -4.8 -7.3 Branched-chain-amino-acid aminotransferase compare
PP_5014 -4.7 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -4.7 -11.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5054 -4.7 -2.7 glutaredoxin 3 compare
PP_t12 -4.7 -1.1 tRNA-Thr compare
PP_5217 -4.7 -13.1 Polyphosphate kinase compare
PP_4271 -4.6 -1.1 conserved protein of unknown function compare
PP_1605 -4.6 -3.0 Ribonuclease HII compare
PP_4701 -4.6 -1.1 glucose-6-phosphate isomerase compare
PP_1988 -4.5 -6.9 3-isopropylmalate dehydrogenase compare
PP_0593 -4.5 -1.1 putative ribosome-binding factor compare
PP_0735 -4.4 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_0083 -4.3 -6.9 tryptophan synthase beta chain compare
PP_0292 -4.2 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1025 -4.2 -9.5 2-isopropylmalate synthase compare
PP_0422 -4.1 -4.1 Indole-3-glycerol phosphate synthase compare
PP_5128 -4.1 -7.5 Dihydroxy-acid dehydratase compare
PP_5097 -4.1 -9.6 homoserine O-acetyltransferase compare
PP_3946 -4.1 -1.3 HTH-type transcriptional repressor NicR compare
PP_0417 -4.0 -11.9 Anthranilate synthase component 1 compare
PP_5008 -4.0 -1.3 Poly granule-associated protein compare
PP_0001 -4.0 -1.8 probable chromosome-partitioning protein compare
PP_4902 -4.0 -2.6 Oligoribonuclease compare
PP_4487 -4.0 -14.5 acetyl-CoA synthetase compare
PP_0421 -4.0 -5.9 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.0 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0888 -3.9 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4804 -3.9 -2.7 RlpA-like lipoprotein compare
PP_2328 -3.9 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_4679 -3.9 -4.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -3.8 -4.2 Acetylglutamate kinase compare
PP_2371 -3.8 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0966 -3.8 -5.8 Histidinol dehydrogenase compare
PP_5393 -3.8 -1.2 putative metal-binding chaperone compare
PP_1164 -3.7 -1.7 Transcriptional regulator, LysR family compare
PP_4122 -3.7 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4785 -3.7 -4.4 conserved exported protein of unknown function compare
PP_0289 -3.7 -5.6 Imidazoleglycerol-phosphate dehydratase compare
PP_5628 -3.6 -2.1 conserved protein of unknown function compare
PP_4678 -3.6 -8.6 Ketol-acid reductoisomerase compare
PP_2370 -3.5 -3.3 conserved protein of unknown function compare
PP_5155 -3.5 -2.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0787 -3.4 -2.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0834 -3.4 -1.9 Sec translocation complex subunit YajC compare
PP_4045 -3.4 -2.2 conserved protein of unknown function compare
PP_1995 -3.3 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5198 -3.2 -3.6 conserved protein of unknown function compare
PP_5098 -3.2 -4.5 methionine biosynthesis protein MetW compare
PP_1676 -3.2 -4.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5185 -3.2 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1733 -3.2 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4699 -3.2 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2280 -3.1 -2.1 conserved protein of unknown function compare
PP_2474 -3.0 -2.1 Glutathione S-transferase family protein compare
PP_0965 -3.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -3.0 -3.7 Ornithine carbamoyltransferase compare
PP_1609 -3.0 -1.7 conserved protein of unknown function compare
PP_1672 -3.0 -4.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2375 -3.0 -8.0 cobalamin-dependent methionine synthase compare
PP_3411 -3.0 -1.6 conserved protein of unknown function compare
PP_0368 -2.9 -6.2 putative Acyl-CoA dehydrogenase compare
PP_0872 -2.9 -6.0 Peptide chain release factor 3 compare
PP_1764 -2.9 -3.8 Phosphoglycolate phosphatase 2 compare
PP_4874 -2.9 -1.3 50S ribosomal protein L9 compare
PP_2168 -2.8 -5.6 Transaldolase compare
PP_3930 -2.8 -2.0 conserved exported protein of unknown function compare
PP_0789 -2.8 -3.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5582 -2.7 -1.2 conserved protein of unknown function compare
PP_0406 -2.7 -3.0 Nucleotidyltransferase family protein compare
PP_1088 -2.6 -6.3 Argininosuccinate synthase compare
PP_1673 -2.6 -4.3 cobyrinate a,c-diamide synthase compare
PP_3840 -2.6 -1.3 conserved protein of unknown function compare
PP_4909 -2.5 -4.7 phosphoserine phosphatase compare
PP_4830 -2.5 -4.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_1233 -2.4 -2.8 sulfurtransferase compare
PP_2136 -2.4 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1763 -2.4 -2.5 putative oxidoreductase compare
PP_0232 -2.4 -1.1 ATP-binding taurine transporter subunit compare
PP_0154 -2.4 -6.2 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) conserved
PP_4977 -2.4 -5.3 5,10-methylenetetrahydrofolate reductase compare
PP_4121 -2.4 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4890 -2.4 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_1774 -2.4 -1.7 conserved exported protein of unknown function compare
PP_3580 -2.3 -0.9 conserved protein of unknown function compare
PP_4829 -2.3 -1.9 putative precorrin-3B synthase compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_1048 -2.3 -1.4 putative protein secretion protein for export compare
PP_4690 -2.2 -2.6 Rieske 2Fe-2S family protein compare
PP_1654 -2.2 -2.8 cysteine synthase B compare
PP_5095 -2.2 -1.0 pyrroline-5-carboxylate reductase compare
PP_0512 -2.2 -2.3 hypothetical protein compare
PP_2429 -2.2 -1.3 putative Membrane protein compare
PP_2142 -2.2 -2.5 Cell division inhibitor SulA compare
PP_5499 -2.1 -2.0 conserved protein of unknown function compare
PP_5007 -2.1 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1994 -2.1 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_0420 -2.1 -3.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2378 -2.1 -2.4 Fe/S biogenesis protein NfuA compare
PP_4517 -2.1 -1.5 conserved protein of unknown function compare
PP_1318 -2.1 -4.1 Cytochrome b compare
PP_1439 -2.0 -1.3 conserved exported protein of unknown function compare
PP_3891 -2.0 -1.6 conserved protein of unknown function compare
PP_4379 -2.0 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0261 -2.0 -2.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1675 -2.0 -4.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3102 -2.0 -3.0 conserved protein of unknown function compare
PP_0893 -2.0 -1.8 ThiJ/PfpI family protein compare
PP_2999 -2.0 -1.2 Glyoxalase family protein compare
PP_4124 -2.0 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_5240 -2.0 -1.8 Response regulator compare
PP_5058 -1.9 -3.5 Carboxy-terminal-processing protease compare
PP_2844 -1.9 -2.5 Urease subunit beta compare
PP_1979 -1.9 -1.7 putative Hydrolase compare
PP_2402 -1.9 -1.7 putative Sensor histidine kinase compare
PP_3048 -1.9 -1.8 conserved protein of unknown function compare
PP_t29 -1.9 -1.2 tRNA-Ala compare
PP_1734 -1.9 -3.4 Probable septum site-determining protein MinC compare
PP_1783 -1.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_4129 -1.9 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5486 -1.8 -1.3 conserved protein of unknown function compare
PP_2929 -1.8 -4.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4317 -1.8 -1.2 conserved protein of unknown function compare
PP_4832 -1.8 -2.2 Precorrin-6x reductase compare
PP_0126 -1.8 -1.8 Cytochrome c4 compare
PP_4696 -1.8 -2.5 Nitrogen regulation protein NR(I) compare
PP_1706 -1.8 -3.0 Nitrite reductase compare
PP_4480 -1.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_4481 -1.8 -4.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1303 -1.8 -2.8 Sulfate adenylyltransferase subunit 2 compare
PP_1679 -1.8 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1739 -1.7 -2.1 conserved membrane protein of unknown function compare
PP_3903 -1.7 -1.2 conserved protein of unknown function compare
PP_5687 -1.7 -2.6 putative permease of the major facilitator superfamily compare
PP_0794 -1.7 -2.8 1-phosphofructokinase monomer compare
PP_5114 -1.7 -1.4 putative adenine methyltransferase compare
PP_4426 -1.7 -2.1 Amino acid ABC transporter, permease protein compare
PP_4993 -1.7 -2.8 Glutathione synthetase compare
PP_4262 -1.7 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1231 -1.7 -2.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5028 -1.7 -2.9 proline iminopeptidase compare
PP_4058 -1.7 -4.6 1,4-alpha-glucan branching enzyme compare
PP_5201 -1.7 -1.6 conserved protein of unknown function, UPF0149 family compare
PP_4266 -1.7 -2.1 Adenine phosphoribosyltransferase compare
PP_0305 -1.6 -2.6 HTH-type transcriptional regulator CdhR compare
PP_1664 -1.6 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_1353 -1.6 -1.8 conserved membrane protein of unknown function compare
PP_1211 -1.6 -1.9 conserved protein of unknown function compare
PP_2390 -1.6 -3.7 Transcriptional regulator, LysR family compare
PP_1553 -1.6 -1.3 conserved protein of unknown function compare
PP_2580 -1.6 -1.5 conserved protein of unknown function compare
PP_2835 -1.6 -1.7 putative oxidoreductase compare
PP_1552 -1.6 -1.9 putative Phage replication protein compare
PP_1677 -1.6 -2.9 Adenosyl-cobyric acid synthase compare
PP_4282 -1.5 -2.7 Aquaporin Z compare
PP_5706 -1.5 -1.8 Sec translocation complex - SecG subunit compare
PP_3880 -1.5 -1.1 conserved exported protein of unknown function compare
PP_3185 -1.5 -1.7 Pet18 protein compare
PP_1681 -1.5 -4.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4697 -1.5 -1.6 poly(A) polymerase compare
PP_2715 -1.5 -1.9 ArsH protein compare
PP_3035 -1.5 -1.2 conserved protein of unknown function compare
PP_4364 -1.5 -1.6 putative Anti-sigma F factor antagonist compare
PP_0833 -1.5 -0.9 queuine tRNA-ribosyltransferase compare
PP_2759 -1.5 -1.6 ribose ABC transporter - ATP-binding subunit compare
PP_1304 -1.5 -3.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4826 -1.5 -2.8 Precorrin-3B C17-methyltransferase compare
PP_0719 -1.5 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0986 -1.5 -2.3 aminomethyltransferase compare
PP_2681 -1.4 -1.1 coenzyme PQQ synthesis protein D compare
PP_0547 -1.4 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2908 -1.4 -1.8 DNA-binding transcriptional repressor compare
PP_4693 -1.4 -3.6 RNA polymerase-binding transcription factor DksA compare
PP_0194 -1.4 -1.7 Transcriptional regulatory protein AlgP compare
PP_3455 -1.4 -2.8 Multidrug efflux RND membrane fusion protein compare
PP_4377 -1.4 -1.6 putative Flagellin FlaG compare
PP_5441 -1.4 -1.0 protein of unknown function compare
PP_1576 -1.4 -2.5 putative Immunity protein compare
PP_1480 -1.4 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium acetate in Pseudomonas putida KT2440

For carbon source Sodium acetate across organisms