Experiment set19IT055 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_01915 -4.2 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02415 -3.2 -4.6 phosphoserine phosphatase compare
PS417_22565 -3.1 -1.6 formyltetrahydrofolate deformylase compare
PS417_00180 -3.1 -3.7 tryptophan synthase subunit alpha compare
PS417_26730 -2.7 -1.3 pyrroline-5-carboxylate reductase compare
PS417_00185 -2.5 -4.3 tryptophan synthase subunit beta compare
PS417_20985 -2.4 -2.9 porin compare
PS417_03260 -2.4 -2.0 5S ribosomal RNA compare
PS417_02975 -2.4 -3.7 3-dehydroquinate dehydratase compare
PS417_27040 -2.3 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_23770 -2.2 -2.6 exodeoxyribonuclease V subunit alpha compare
PS417_27870 -2.2 -3.1 ATP-dependent DNA helicase RecG compare
PS417_16555 -2.1 -2.7 cupin compare
PS417_01560 -2.1 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_18310 -2.0 -2.6 hypothetical protein compare
PS417_08135 -2.0 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_09725 -2.0 -7.2 transporter compare
PS417_04595 -1.9 -3.1 cell division protein MraZ compare
PS417_23805 -1.9 -6.1 acetolactate synthase 3 regulatory subunit compare
PS417_07560 -1.8 -2.4 universal stress protein UspA compare
PS417_06680 -1.8 -7.5 nuclease PIN compare
PS417_24155 -1.8 -1.8 ATP-binding protein compare
PS417_20785 -1.8 -4.9 transcriptional regulator compare
PS417_23810 -1.7 -9.9 acetolactate synthase 3 catalytic subunit compare
PS417_24745 -1.7 -3.1 gamma-glutamyl phosphate reductase compare
PS417_22445 -1.7 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_27800 -1.7 -3.2 exodeoxyribonuclease III compare
PS417_18595 -1.7 -5.9 3-isopropylmalate dehydratase compare
PS417_21630 -1.6 -2.3 magnesium transporter compare
PS417_01575 -1.6 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -1.6 -3.4 isopropylmalate isomerase compare
PS417_04650 -1.6 -1.3 D-alanine--D-alanine ligase compare
PS417_25710 -1.6 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_14940 -1.5 -2.3 LysR family transcriptional regulator compare
PS417_00650 -1.5 -1.1 LysR family transcriptional regulator compare
PS417_01580 -1.5 -1.8 imidazole glycerol phosphate synthase compare
PS417_27795 -1.5 -1.0 orotate phosphoribosyltransferase compare
PS417_01565 -1.4 -5.3 imidazole glycerol phosphate synthase compare
PS417_01605 -1.4 -1.3 phosphoglycerate mutase compare
PS417_23545 -1.4 -2.4 gamma-glutamyl kinase compare
PS417_27865 -1.4 -2.6 LysR family transcriptional regulator compare
PS417_03560 -1.3 -1.9 GTP-binding protein compare
PS417_04375 -1.3 -2.5 ABC transporter ATP-binding protein compare
PS417_08090 -1.3 -1.3 3-oxoacyl-ACP reductase compare
PS417_18585 -1.3 -4.6 3-isopropylmalate dehydrogenase compare
PS417_06205 -1.3 -6.7 methionine aminopeptidase compare
PS417_16510 -1.3 -3.6 Clp protease ClpX compare
PS417_08320 -1.3 -2.3 metal-chelation protein CHAD compare
PS417_21575 -1.2 -4.1 chemotaxis protein compare
PS417_19690 -1.2 -4.3 histidine kinase compare
PS417_07710 -1.2 -4.7 membrane protein compare
PS417_07640 -1.2 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23025 -1.2 -4.3 murein transglycosylase compare
PS417_08540 -1.2 -2.5 RNA helicase compare
PS417_08125 -1.2 -0.5 prephenate dehydratase compare
PS417_16005 -1.2 -2.5 ATPase compare
PS417_21430 -1.1 -1.4 3-oxoacyl-ACP synthase compare
PS417_13165 -1.1 -2.5 peroxidase compare
PS417_16520 -1.1 -2.1 cold-shock protein compare
PS417_24500 -1.1 -3.7 DEAD/DEAH box helicase compare
PS417_27195 -1.1 -1.4 N-acetylglutamate synthase compare
PS417_02555 -1.1 -7.6 exoribonuclease R compare
PS417_23775 -1.1 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_05815 -1.1 -3.7 recombinase RecA compare
PS417_20705 -1.1 -3.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_18560 -1.1 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01850 -1.1 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01855 -1.1 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_23915 -1.0 -3.6 pantoate--beta-alanine ligase compare
PS417_03380 -1.0 -1.2 hypothetical protein compare
PS417_23800 -1.0 -6.0 ketol-acid reductoisomerase compare
PS417_23375 -1.0 -1.5 cytochrome C oxidase compare
PS417_19835 -1.0 -1.4 flagellar biosynthesis protein FliS compare
PS417_20700 -1.0 -6.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_05535 -1.0 -1.8 Fis family transcriptional regulator compare
PS417_00085 -1.0 -1.4 16S rRNA methyltransferase compare
PS417_18395 -1.0 -1.7 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_13730 -1.0 -2.5 hypothetical protein compare
PS417_25390 -1.0 -3.0 MFS transporter compare
PS417_08580 -1.0 -4.1 histidine kinase compare
PS417_27945 -1.0 -1.6 type VI secretion protein ImpA compare
PS417_21595 -1.0 -2.1 flagellar biosynthesis protein FlgN compare
PS417_17670 -1.0 -2.6 ABC transporter permease compare
PS417_22050 -0.9 -2.5 ribonuclease BN compare
PS417_26890 -0.9 -4.5 dihydroxy-acid dehydratase compare
PS417_24585 -0.9 -5.9 AMP nucleosidase compare
PS417_23380 -0.9 -2.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_06245 -0.9 -1.6 zinc metallopeptidase RseP compare
PS417_12855 -0.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05025 -0.9 -1.9 maleylacetoacetate isomerase compare
PS417_04385 -0.9 -1.9 organic solvent ABC transporter substrate-binding protein compare
PS417_11810 -0.9 -2.7 oxidoreductase compare
PS417_26850 -0.9 -0.7 twin-arginine translocation pathway signal protein compare
PS417_15540 -0.9 -1.0 NUDIX hydrolase compare
PS417_04390 -0.9 -2.4 toluene tolerance protein compare
PS417_01635 -0.9 -5.2 nitrogen regulation protein NR(I) compare
PS417_22990 -0.9 -1.1 iron dicitrate transport regulator FecR compare
PS417_27425 -0.9 -4.1 exopolyphosphatase compare
PS417_06200 -0.9 -3.0 protein-PII uridylyltransferase compare
PS417_28515 -0.8 -1.2 16S rRNA methyltransferase compare
PS417_19955 -0.8 -1.6 hypothetical protein compare
PS417_25725 -0.8 -5.8 anthranilate synthase component I compare
PS417_17215 -0.8 -1.9 peptidylprolyl isomerase compare
PS417_22450 -0.8 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_28070 -0.8 -4.8 phosphate ABC transporter ATP-binding protein compare
PS417_26335 -0.8 -1.7 BetI family transcriptional regulator compare
PS417_19860 -0.8 -6.6 flagellar hook protein FlgL compare
PS417_28220 -0.8 -2.1 LysR family transcriptional regulator compare
PS417_22350 -0.8 -1.8 Fis family transcriptional regulator compare
PS417_08545 -0.8 -1.6 aromatic ring-opening dioxygenase LigB compare
PS417_26815 -0.8 -1.9 peptidase M16 compare
PS417_19850 -0.8 -5.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_04705 -0.8 -1.8 hypothetical protein compare
PS417_27910 -0.8 -2.6 PppA compare
PS417_04420 -0.8 -4.9 histidinol dehydrogenase compare
PS417_01710 -0.8 -3.3 histidine utilization repressor compare
PS417_25715 -0.8 -3.2 anthranilate phosphoribosyltransferase compare
PS417_11020 -0.8 -2.0 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_20025 -0.8 -1.6 alpha-ribazole phosphatase compare
PS417_25720 -0.8 -2.9 anthranilate synthase component II compare
PS417_06375 -0.8 -0.6 deoxycytidine triphosphate deaminase compare
PS417_25765 -0.8 -1.6 transcriptional regulator compare
PS417_12490 -0.8 -1.6 autotransporter adhesin compare
PS417_26645 -0.8 -1.5 chemotaxis protein compare
PS417_00845 -0.8 -1.2 transcriptional regulator compare
PS417_22260 -0.8 -1.8 segregation and condensation protein B compare
PS417_17830 -0.8 -1.9 4-hydroxyphenylacetate isomerase compare
PS417_10490 -0.8 -1.5 delta-aminolevulinic acid dehydratase compare
PS417_08930 -0.8 -2.1 hypothetical protein compare
PS417_03815 -0.7 -1.5 DNA transporter compare
PS417_06045 -0.7 -1.9 membrane protein compare
PS417_15200 -0.7 -2.6 protein activator of alkane oxidation PraB compare
PS417_16000 -0.7 -1.6 chemotaxis protein CheY compare
PS417_12565 -0.7 -0.8 2-dehydro-3-deoxygluconokinase compare
PS417_15095 -0.7 -2.5 hypothetical protein compare
PS417_04415 -0.7 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25985 -0.7 -1.4 dethiobiotin synthetase compare
PS417_13950 -0.7 -2.2 LuxR family transcriptional regulator compare
PS417_00405 -0.7 -3.6 DNA polymerase I compare
PS417_25315 -0.7 -2.9 membrane protein compare
PS417_05100 -0.7 -1.4 RNA polymerase sigma factor compare
PS417_17610 -0.7 -1.0 AsnC family transcriptional regulator compare
PS417_07575 -0.7 -2.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_08685 -0.7 -1.5 flagellar hook-length control protein FliK compare
PS417_25825 -0.7 -2.2 sulfurtransferase compare
PS417_24935 -0.7 -0.8 hypothetical protein compare
PS417_13185 -0.7 -1.8 RND transporter compare
PS417_03970 -0.7 -1.2 1-phosphofructokinase compare
PS417_25700 -0.7 -1.1 cyclic AMP receptor protein compare
PS417_04590 -0.7 -3.6 methyltransferase compare
PS417_23900 -0.7 -3.2 poly(A) polymerase compare
PS417_24165 -0.7 -2.1 hypothetical protein compare
PS417_19865 -0.7 -5.3 flagellar hook protein FlgK compare
PS417_12355 -0.7 -1.7 magnesium chelatase compare
PS417_16785 -0.7 -2.7 ABC transporter permease compare
PS417_09460 -0.7 -1.4 alkanesulfonate monooxygenase compare
PS417_16055 -0.7 -1.6 biopolymer transporter TolR compare
PS417_12805 -0.7 -4.7 glycogen branching protein compare
PS417_15675 -0.7 -2.5 chemotaxis protein compare
PS417_26420 -0.7 -1.1 hypothetical protein compare
PS417_27515 -0.6 -2.4 heme biosynthesis protein HemY compare
PS417_20775 -0.6 -2.6 coproporphyrinogen III oxidase compare
PS417_24560 -0.6 -1.2 ferrous iron transporter compare
PS417_18235 -0.6 -1.3 nitrile hydratase compare
PS417_07400 -0.6 -2.3 hypothetical protein compare
PS417_04440 -0.6 -1.5 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_12310 -0.6 -3.1 methionine synthase compare
PS417_15285 -0.6 -0.8 type VI secretion protein compare
PS417_01750 -0.6 -0.8 histidine ammonia-lyase compare
PS417_19350 -0.6 -2.3 GTP cyclohydrolase compare
PS417_17125 -0.6 -2.1 transcriptional regulator compare
PS417_22115 -0.6 -1.3 transcriptional regulator compare
PS417_26260 -0.6 -1.0 hypothetical protein compare
PS417_11410 -0.6 -2.1 phospholipase compare
PS417_22575 -0.6 -3.7 exonuclease I compare
PS417_00175 -0.6 -0.8 CigR compare
PS417_06880 -0.6 -2.1 RNA polymerase sigma factor compare
PS417_21560 -0.6 -3.6 flagellar basal body rod modification protein FlgD compare
PS417_16875 -0.6 -2.0 signal peptidase compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27305 -0.6 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_18025 -0.6 -1.6 cytochrome C compare
PS417_22855 -0.6 -1.8 ssDNA exonuclease RecJ compare
PS417_10695 -0.6 -2.2 decarboxylase compare
PS417_09915 -0.6 -1.0 hypothetical protein compare
PS417_26640 -0.6 -1.8 hypothetical protein compare
PS417_19765 -0.6 -4.9 flagellar hook-length control protein compare
PS417_07470 -0.6 -1.0 hypothetical protein compare
PS417_10240 -0.6 -1.6 hypothetical protein compare
PS417_26295 -0.6 -1.4 gamma-butyrobetaine dioxygenase compare
PS417_23390 -0.6 -2.6 ubiquinol oxidase subunit II compare
PS417_12485 -0.6 -2.5 hypothetical protein compare
PS417_19880 -0.6 -3.1 flagellar basal body L-ring protein compare
PS417_24370 -0.6 -0.6 (2Fe-2S)-binding protein compare
PS417_20480 -0.6 -2.0 hypothetical protein compare
PS417_16720 -0.6 -0.8 membrane protein compare
PS417_15085 -0.6 -1.8 ATPase AAA compare
PS417_16495 -0.6 -2.5 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_10330 -0.6 -2.2 histidine kinase compare
PS417_20160 -0.6 -2.2 cysteine synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments