Experiment set19IT053 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_01915 -4.1 -1.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_07470 -3.7 -3.0 hypothetical protein compare
PS417_18310 -3.5 -2.0 hypothetical protein compare
PS417_21480 -3.0 -2.5 23S rRNA pseudouridylate synthase compare
PS417_02415 -2.9 -4.2 phosphoserine phosphatase compare
PS417_19835 -2.9 -2.5 flagellar biosynthesis protein FliS compare
PS417_00180 -2.8 -3.8 tryptophan synthase subunit alpha compare
PS417_04650 -2.7 -1.2 D-alanine--D-alanine ligase compare
PS417_21630 -2.7 -3.7 magnesium transporter compare
PS417_26730 -2.7 -1.3 pyrroline-5-carboxylate reductase compare
PS417_19860 -2.6 -16.8 flagellar hook protein FlgL compare
PS417_21595 -2.6 -6.4 flagellar biosynthesis protein FlgN compare
PS417_19765 -2.4 -8.3 flagellar hook-length control protein compare
PS417_19795 -2.3 -14.0 flagellar assembly protein FliH compare
PS417_19880 -2.3 -8.3 flagellar basal body L-ring protein compare
PS417_19850 -2.3 -9.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23545 -2.3 -2.3 gamma-glutamyl kinase compare
PS417_19840 -2.3 -10.5 flagellar cap protein FliD compare
PS417_27865 -2.2 -3.7 LysR family transcriptional regulator compare
PS417_19790 -2.2 -6.1 ATP synthase compare
PS417_22445 -2.2 -4.0 ATP-dependent DNA helicase RuvB compare
PS417_19865 -2.2 -11.7 flagellar hook protein FlgK compare
PS417_19755 -2.1 -3.0 flagellar motor switch protein FliM compare
PS417_20985 -2.1 -2.7 porin compare
PS417_21555 -2.1 -12.1 flagellar hook protein FlgE compare
PS417_19885 -2.0 -5.1 flagellar basal body rod protein FlgG compare
PS417_01575 -2.0 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19730 -2.0 -4.4 flagellar biosynthesis protein FliR compare
PS417_06680 -2.0 -6.7 nuclease PIN compare
PS417_19740 -1.9 -9.0 flagellar biosynthesis protein flip compare
PS417_09725 -1.9 -9.9 transporter compare
PS417_19695 -1.9 -8.8 flagellar biosynthesis sigma factor compare
PS417_21585 -1.9 -9.9 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19785 -1.9 -4.9 flagellar biogenesis protein compare
PS417_21570 -1.9 -9.2 flagellar basal body rod protein FlgB compare
PS417_02975 -1.9 -4.5 3-dehydroquinate dehydratase compare
PS417_27870 -1.9 -4.0 ATP-dependent DNA helicase RecG compare
PS417_19710 -1.8 -10.1 flagellar biosynthesis protein FlhA compare
PS417_01580 -1.8 -2.1 imidazole glycerol phosphate synthase compare
PS417_08135 -1.8 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_19735 -1.8 -7.5 flagellar biosynthesis protein FliQ compare
PS417_01565 -1.8 -5.6 imidazole glycerol phosphate synthase compare
PS417_00185 -1.8 -4.0 tryptophan synthase subunit beta compare
PS417_06710 -1.8 -2.6 beta-ketoadipyl CoA thiolase compare
PS417_27040 -1.8 -2.9 3-phosphoglycerate dehydrogenase compare
PS417_18595 -1.7 -3.7 3-isopropylmalate dehydratase compare
PS417_01560 -1.7 -2.6 imidazoleglycerol-phosphate dehydratase compare
PS417_21565 -1.7 -4.4 flagellar basal body rod protein FlgC compare
PS417_04595 -1.6 -2.8 cell division protein MraZ compare
PS417_03560 -1.6 -2.0 GTP-binding protein compare
PS417_27290 -1.6 -2.3 hypothetical protein compare
PS417_19825 -1.6 -10.9 ATPase AAA compare
PS417_00755 -1.6 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_01855 -1.6 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -1.6 -8.9 acetolactate synthase 3 catalytic subunit compare
PS417_19725 -1.5 -4.7 flagellar biosynthesis protein FlhB compare
PS417_18585 -1.5 -4.4 3-isopropylmalate dehydrogenase compare
PS417_17610 -1.5 -2.0 AsnC family transcriptional regulator compare
PS417_03385 -1.5 -1.9 flavin reductase compare
PS417_18600 -1.5 -3.0 isopropylmalate isomerase compare
PS417_19745 -1.5 -2.7 flagellar assembly protein FliO compare
PS417_28450 -1.5 -3.1 XRE family transcriptional regulator compare
PS417_24745 -1.5 -2.6 gamma-glutamyl phosphate reductase compare
PS417_17645 -1.4 -1.8 RND transporter compare
PS417_25710 -1.4 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_07840 -1.4 -3.0 hypothetical protein compare
PS417_21560 -1.4 -3.6 flagellar basal body rod modification protein FlgD compare
PS417_01095 -1.4 -1.7 amino acid ABC transporter ATP-binding protein compare
PS417_27815 -1.4 -1.4 hypothetical protein compare
PS417_02510 -1.3 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_15105 -1.3 -4.8 membrane protein compare
PS417_14940 -1.3 -1.9 LysR family transcriptional regulator compare
PS417_22175 -1.3 -2.0 amino acid transporter LysE compare
PS417_26890 -1.3 -5.3 dihydroxy-acid dehydratase compare
PS417_24155 -1.3 -1.7 ATP-binding protein compare
PS417_23770 -1.3 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_04390 -1.2 -3.1 toluene tolerance protein compare
PS417_23805 -1.2 -3.1 acetolactate synthase 3 regulatory subunit compare
PS417_19350 -1.2 -3.7 GTP cyclohydrolase compare
PS417_15095 -1.2 -3.3 hypothetical protein compare
PS417_17945 -1.2 -1.1 hypothetical protein compare
PS417_09915 -1.2 -1.7 hypothetical protein compare
PS417_28145 -1.2 -1.8 AraC family transcriptional regulator compare
PS417_24585 -1.2 -7.0 AMP nucleosidase compare
PS417_00705 -1.2 -1.2 MarR family transcriptional regulator compare
PS417_02820 -1.2 -1.7 urea ABC transporter ATP-binding protein compare
PS417_13075 -1.1 -1.4 hypothetical protein compare
PS417_04385 -1.1 -2.7 organic solvent ABC transporter substrate-binding protein compare
PS417_06205 -1.1 -5.5 methionine aminopeptidase compare
PS417_22565 -1.1 -0.9 formyltetrahydrofolate deformylase compare
PS417_23025 -1.1 -4.4 murein transglycosylase compare
PS417_23800 -1.1 -5.8 ketol-acid reductoisomerase compare
PS417_22795 -1.1 -1.6 exclusion suppressor FxsA compare
PS417_27800 -1.1 -2.4 exodeoxyribonuclease III compare
PS417_03300 -1.1 -2.5 alanine acetyltransferase compare
PS417_27795 -1.1 -0.8 orotate phosphoribosyltransferase compare
PS417_05635 -1.1 -5.4 membrane protein compare
PS417_07640 -1.1 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01605 -1.0 -1.0 phosphoglycerate mutase compare
PS417_07560 -1.0 -1.3 universal stress protein UspA compare
PS417_12855 -1.0 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21430 -1.0 -1.6 3-oxoacyl-ACP synthase compare
PS417_18560 -1.0 -3.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27585 -1.0 -2.0 diaminopimelate epimerase compare
PS417_00045 -1.0 -1.8 glycerol acyltransferase compare
PS417_05025 -1.0 -1.3 maleylacetoacetate isomerase compare
PS417_04415 -1.0 -3.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_21575 -1.0 -3.3 chemotaxis protein compare
PS417_15495 -1.0 -1.2 FAD-dependent oxidoreductase compare
PS417_02770 -1.0 -1.6 membrane protein compare
PS417_19800 -1.0 -2.9 flagellar motor switch protein FliG compare
PS417_19805 -1.0 -1.9 flagellar M-ring protein FliF compare
PS417_16005 -1.0 -1.3 ATPase compare
PS417_01270 -1.0 -1.6 iron ABC transporter substrate-binding protein compare
PS417_02160 -1.0 -1.2 hypothetical protein compare
PS417_06600 -1.0 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_00405 -0.9 -4.3 DNA polymerase I compare
PS417_23385 -0.9 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -0.9 -1.4 cytochrome C oxidase compare
PS417_02225 -0.9 -1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_05815 -0.9 -2.4 recombinase RecA compare
PS417_01920 -0.9 -1.0 ATP-dependent protease subunit HslV compare
PS417_24115 -0.9 -1.6 hypothetical protein compare
PS417_25720 -0.9 -3.5 anthranilate synthase component II compare
PS417_01710 -0.9 -3.9 histidine utilization repressor compare
PS417_06540 -0.9 -1.5 membrane protein compare
PS417_23755 -0.9 -1.2 membrane protein compare
PS417_27595 -0.9 -2.2 recombinase XerC compare
PS417_23915 -0.9 -3.2 pantoate--beta-alanine ligase compare
PS417_22450 -0.9 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_03100 -0.9 -0.9 pilus assembly protein compare
PS417_26145 -0.9 -1.8 hypothetical protein compare
PS417_23995 -0.9 -0.7 preprotein translocase subunit SecG compare
PS417_25715 -0.9 -2.7 anthranilate phosphoribosyltransferase compare
PS417_24500 -0.9 -2.3 DEAD/DEAH box helicase compare
PS417_08540 -0.9 -1.9 RNA helicase compare
PS417_22690 -0.9 -1.4 phosphogluconate dehydratase compare
PS417_00995 -0.9 -1.4 alpha/beta hydrolase compare
PS417_07710 -0.9 -3.0 membrane protein compare
PS417_22870 -0.9 -1.4 lipoprotein compare
PS417_04420 -0.8 -4.8 histidinol dehydrogenase compare
PS417_27555 -0.8 -2.0 DNA-binding protein compare
PS417_01635 -0.8 -4.1 nitrogen regulation protein NR(I) compare
PS417_00375 -0.8 -2.1 membrane protein compare
PS417_23380 -0.8 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_26565 -0.8 -2.6 LysR family transcriptional regulator compare
PS417_24135 -0.8 -0.9 hypothetical protein compare
PS417_00175 -0.8 -1.0 CigR compare
PS417_10680 -0.8 -2.5 enoyl-CoA hydratase compare
PS417_14590 -0.8 -1.6 LysR family transcriptional regulator compare
PS417_18395 -0.8 -1.2 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_05535 -0.8 -1.5 Fis family transcriptional regulator compare
PS417_13205 -0.8 -1.3 isochorismate-pyruvate lyase compare
PS417_19955 -0.8 -1.6 hypothetical protein compare
PS417_23390 -0.8 -4.0 ubiquinol oxidase subunit II compare
PS417_28220 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_27315 -0.8 -0.9 hypothetical protein compare
PS417_18545 -0.8 -2.0 cell division protein compare
PS417_19650 -0.8 -3.1 chemotaxis protein CheW compare
PS417_21090 -0.8 -1.2 hypothetical protein compare
PS417_19870 -0.8 -1.7 flagellar rod assembly protein FlgJ compare
PS417_11415 -0.8 -1.3 hypothetical protein compare
PS417_02555 -0.8 -5.5 exoribonuclease R compare
PS417_02700 -0.8 -1.7 urease accessory protein UreG compare
PS417_11830 -0.8 -1.8 membrane protein compare
PS417_15215 -0.8 -1.1 protein activator of alkane oxidation PraA compare
PS417_19665 -0.8 -3.1 flagellar motor protein MotD compare
PS417_01640 -0.8 -2.4 histidine kinase compare
PS417_02990 -0.8 -1.7 hypothetical protein compare
PS417_12515 -0.8 -2.2 lactate dehydrogenase compare
PS417_26420 -0.8 -1.2 hypothetical protein compare
PS417_10985 -0.8 -0.8 NADH:flavin oxidoreductase compare
PS417_15100 -0.7 -1.5 BatB protein compare
PS417_16555 -0.7 -1.4 cupin compare
PS417_22895 -0.7 -3.0 tyrosine recombinase XerD compare
PS417_25725 -0.7 -4.7 anthranilate synthase component I compare
PS417_15505 -0.7 -2.0 glutaminase compare
PS417_10060 -0.7 -1.3 hypothetical protein compare
PS417_24125 -0.7 -2.1 hypothetical protein compare
PS417_11945 -0.7 -1.3 hypothetical protein compare
PS417_21510 -0.7 -1.2 histidine kinase compare
PS417_26225 -0.7 -2.0 electron transfer flavoprotein subunit beta compare
PS417_10455 -0.7 -2.2 membrane protein compare
PS417_21670 -0.7 -2.6 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_06030 -0.7 -2.1 hypothetical protein compare
PS417_20685 -0.7 -1.7 CAAX protease compare
PS417_12805 -0.7 -4.1 glycogen branching protein compare
PS417_08580 -0.7 -3.3 histidine kinase compare
PS417_15820 -0.7 -1.3 universal stress protein UspA compare
PS417_14045 -0.7 -2.1 alkyl hydroperoxide reductase compare
PS417_04965 -0.7 -1.8 hypothetical protein compare
PS417_15085 -0.7 -2.1 ATPase AAA compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_06165 -0.7 -2.8 thiamine biosynthesis protein ThiF compare
PS417_00545 -0.7 -2.7 hypothetical protein compare
PS417_11380 -0.7 -1.5 peptidylprolyl isomerase compare
PS417_16000 -0.7 -1.1 chemotaxis protein CheY compare
PS417_12660 -0.7 -0.8 hypothetical protein compare
PS417_18250 -0.7 -1.6 chemotaxis protein compare
PS417_04865 -0.7 -1.0 molybdenum cofactor biosynthesis protein MoaC compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments