Experiment set19IT050 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.4 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.8 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_1568 -5.5 -1.5 conserved protein of unknown function compare
PP_0048 -5.1 -1.4 conserved protein of unknown function compare
PP_4199 -4.9 -1.4 putative Lipoprotein compare
PP_0291 -4.8 -4.9 conserved protein of unknown function compare
PP_0083 -4.7 -7.8 tryptophan synthase beta chain compare
PP_5289 -4.6 -5.2 Acetylglutamate kinase compare
PP_3808 -4.6 -1.8 Antibiotic synthesis protein MbtH compare
PP_5346 -4.6 -9.6 pyruvate carboxylase subunit B compare
PP_3460 -4.4 -3.2 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_0292 -4.4 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -4.3 -5.1 Nitrogen regulation protein NR(I) compare
PP_4504 -4.1 -1.6 conserved exported protein of unknown function compare
PP_5347 -4.1 -10.2 pyruvate carboxylase subunit A compare
PP_5155 -4.0 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0082 -4.0 -5.8 tryptophan synthase alpha chain compare
PP_0967 -3.9 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -3.9 -5.4 Ornithine carbamoyltransferase compare
PP_4122 -3.8 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2414 -3.7 -2.6 conserved exported protein of unknown function compare
PP_3392 -3.5 -1.9 conserved protein of unknown function compare
PP_0513 -3.4 -3.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1231 -3.4 -5.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2370 -3.4 -2.8 conserved protein of unknown function compare
PP_3999 -3.4 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4964 -3.4 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5098 -3.3 -6.7 methionine biosynthesis protein MetW compare
PP_5027 -3.2 -2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0289 -3.2 -4.6 Imidazoleglycerol-phosphate dehydratase compare
PP_2883 -3.0 -1.8 conserved protein of unknown function compare
PP_2371 -3.0 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0366 -2.9 -3.3 dethiobiotin synthetase compare
PP_0362 -2.9 -6.3 Biotin synthase compare
PP_1679 -2.9 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3874 -2.9 -2.1 conserved protein of unknown function compare
PP_1988 -2.9 -5.3 3-isopropylmalate dehydrogenase compare
PP_1654 -2.8 -3.8 cysteine synthase B compare
PP_5128 -2.8 -5.9 Dihydroxy-acid dehydratase compare
PP_0966 -2.7 -5.3 Histidinol dehydrogenase compare
PP_0364 -2.6 -5.1 pimeloyl-[acp] methyl ester esterase compare
PP_0184 -2.6 -4.4 Argininosuccinate lyase compare
PP_4678 -2.5 -7.4 Ketol-acid reductoisomerase compare
PP_4909 -2.5 -5.0 phosphoserine phosphatase compare
PP_2309 -2.5 -1.5 conserved protein of unknown function compare
PP_0290 -2.5 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0276 -2.5 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5303 -2.5 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5007 -2.5 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1022 -2.4 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_0152 -2.3 -1.8 conserved exported protein of unknown function compare
PP_5095 -2.3 -1.3 pyrroline-5-carboxylate reductase compare
PP_1025 -2.3 -6.8 2-isopropylmalate synthase compare
PP_0401 -2.3 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_4785 -2.3 -4.0 conserved exported protein of unknown function compare
PP_0422 -2.2 -3.4 Indole-3-glycerol phosphate synthase compare
PP_1985 -2.1 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_4824 -2.1 -5.5 Sensor histidine kinase/response regulator compare
PP_0607 -2.1 -1.9 putative Type IV pili biogenesis protein FimT compare
PP_2378 -2.1 -2.7 Fe/S biogenesis protein NfuA compare
PP_5348 -2.1 -4.4 Transcriptional regulator, LysR family compare
PP_5097 -2.1 -6.3 homoserine O-acetyltransferase compare
PP_1404 -2.1 -2.6 conserved protein of unknown function compare
PP_4253 -2.1 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_1995 -2.1 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2328 -2.0 -4.3 Phosphoadenosine phosphosulfate reductase compare
PP_3417 -2.0 -3.3 D-gluconate transporter compare
PP_5331 -2.0 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_2681 -2.0 -1.6 coenzyme PQQ synthesis protein D compare
PP_4874 -2.0 -1.5 50S ribosomal protein L9 compare
PP_0787 -2.0 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3241 -2.0 -1.4 conserved exported protein of unknown function compare
PP_4797 -2.0 -2.2 conserved protein of unknown function compare
PP_1783 -2.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_2001 -1.9 -4.4 O-succinylhomoserine sulfhydrylase compare
PP_4680 -1.9 -6.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0393 -1.9 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5039 -1.9 -1.7 conserved protein of unknown function compare
PP_0365 -1.9 -4.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1088 -1.9 -4.7 Argininosuccinate synthase compare
PP_1233 -1.8 -3.7 sulfurtransferase compare
PP_5014 -1.8 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0003 -1.8 -2.4 16S RNA methyltransferase compare
PP_1554 -1.8 -2.0 conserved protein of unknown function compare
PP_4984 -1.8 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5217 -1.8 -5.8 Polyphosphate kinase compare
PP_2070 -1.7 -1.5 Transcriptional regulator, AraC family compare
PP_4320 -1.7 -3.1 cytochrome c-type biogenesis protein compare
PP_2568 -1.7 -1.2 Ring-cleaving dioxygenase compare
PP_4679 -1.7 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5201 -1.7 -1.6 conserved protein of unknown function, UPF0149 family compare
PP_1367 -1.7 -3.0 formyltetrahydrofolate hydrolase compare
PP_1397 -1.6 -2.3 conserved protein of unknown function compare
PP_3105 -1.6 -1.3 conserved membrane protein of unknown function compare
PP_1999 -1.6 -1.7 membrane protein required for colicin V production compare
PP_0125 -1.6 -1.5 putative cytochrome c-type protein compare
PP_3866 -1.6 -1.6 conserved protein of unknown function compare
PP_2214 -1.6 -2.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1362 -1.6 -2.7 pyruvate kinase II compare
PP_1912 -1.6 -3.3 Phosphate acyltransferase compare
PP_1353 -1.5 -2.2 conserved membrane protein of unknown function compare
PP_5569 -1.5 -2.3 protein of unknown function of phage origin compare
PP_4480 -1.5 -4.1 arginine N-succinyltransferase, subunit alpha compare
PP_3197 -1.5 -3.2 Glyoxalase family protein compare
PP_2336 -1.4 -3.3 aconitate hydratase 1 compare
PP_0962 -1.4 -1.9 toluene-tolerance protein compare
PP_1672 -1.4 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1733 -1.4 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0420 -1.4 -4.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4722 -1.4 -2.6 Transcription elongation factor GreA compare
PP_0363 -1.4 -4.1 8-amino-7-oxononanoate synthase compare
PP_0138 -1.4 -4.5 conserved membrane protein of unknown function compare
PP_1824 -1.3 -1.3 Smr domain protein compare
PP_1114 -1.3 -2.1 SEC-C domain protein compare
PP_5610 -1.3 -1.3 protein of unknown function compare
PP_5350 -1.3 -1.9 Transcriptional regulator, RpiR family compare
PP_2462 -1.3 -1.3 conserved protein of unknown function compare
PP_3757 -1.3 -1.8 Chemotaxis protein CheY compare
PP_5022 -1.3 -0.8 Glutamine transport ATP-binding protein GlnQ compare
PP_0643 -1.3 -1.4 protein of unknown function compare
PP_1426 -1.3 -5.0 L-aspartate oxidase compare
PP_5176 -1.3 -1.0 conserved protein of unknown function compare
PP_5104 -1.2 -2.6 thiazole synthase compare
PP_4226 -1.2 -1.8 conserved protein of unknown function compare
PP_2403 -1.2 -1.0 Chemotaxis protein CheY compare
PP_1656 -1.2 -4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_2416 -1.2 -1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_2388 -1.2 -1.7 Transporter, LysE family compare
PP_0986 -1.2 -2.3 aminomethyltransferase compare
PP_0874 -1.2 -0.8 conserved protein of unknown function compare
PP_0735 -1.2 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_2880 -1.2 -1.6 Transcriptional regulator, TetR family compare
PP_5639 -1.2 -4.2 conserved exported protein of unknown function compare
PP_5491 -1.2 -1.7 conserved protein of unknown function with SEC-C motif domain compare
PP_4528 -1.2 -1.3 conserved protein of unknown function compare
PP_4102 -1.2 -1.9 conserved protein of unknown function compare
PP_4988 -1.2 -4.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4828 -1.2 -0.9 Precorrin-8X methylmutase compare
PP_5225 -1.2 -1.0 frataxin compare
PP_4120 -1.2 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_5320 -1.2 -2.1 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4902 -1.1 -1.1 Oligoribonuclease compare
PP_5248 -1.1 -1.2 putative hydrolase compare
PP_2772 -1.1 -2.4 putative Monooxygenase compare
PP_4701 -1.1 -0.7 glucose-6-phosphate isomerase compare
PP_4247 -1.1 -1.2 Exonuclease compare
PP_4738 -1.1 -1.4 conserved exported protein of unknown function compare
PP_4364 -1.1 -2.2 putative Anti-sigma F factor antagonist compare
PP_0022 -1.1 -0.8 hypothetical protein compare
PP_1374 -1.1 -2.2 conserved protein of unknown function compare
PP_0888 -1.1 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_1994 -1.1 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_2397 -1.1 -2.0 EF hand domain protein compare
PP_5059 -1.1 -2.9 conserved exported protein of unknown function compare
PP_4695 -1.1 -4.5 Sensory box histidine kinase compare
PP_4925 -1.1 -2.0 conserved protein of unknown function compare
PP_4129 -1.1 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1714 -1.1 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_3363 -1.1 -2.2 putative thymidylate kinase compare
PP_0182 -1.1 -2.0 conserved protein of unknown function compare
PP_5110 -1.1 -1.1 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2499 -1.1 -0.9 conserved protein of unknown function compare
PP_1589 -1.1 -3.5 uridylyltransferase compare
PP_4693 -1.1 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_1736 -1.1 -1.2 conserved protein of unknown function compare
PP_1764 -1.0 -2.2 Phosphoglycolate phosphatase 2 compare
PP_5000 -1.0 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_2748 -1.0 -1.5 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2360 -1.0 -3.3 putative type 1 pili subunit CsuA/B protein compare
PP_1829 -1.0 -1.1 Hydrolase, alpha/beta fold family compare
PP_2429 -1.0 -1.2 putative Membrane protein compare
PP_1987 -1.0 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_1548 -1.0 -1.2 conserved protein of unknown function compare
PP_1676 -1.0 -2.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5185 -1.0 -1.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1303 -1.0 -1.9 Sulfate adenylyltransferase subunit 2 compare
PP_4130 -1.0 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1214 -1.0 -1.3 putative transcriptional regulatory protein compare
PP_4929 -1.0 -2.4 Transcriptional regulator, LysR family compare
PP_4993 -1.0 -1.7 Glutathione synthetase compare
PP_1218 -1.0 -1.3 putative acyl-CoA thioesterase compare
PP_3923 -1.0 -1.8 Phosphoglycerate mutase compare
PP_2659 -1.0 -2.8 phosphate ABC transporter ATP-binding protein compare
PP_4684 -1.0 -2.2 conserved protein of unknown function with kinase-like domain compare
PP_2526 -1.0 -1.3 conserved membrane protein of unknown function compare
PP_5594 -1.0 -0.9 conserved protein of unknown function compare
PP_2752 -1.0 -3.0 conserved exported protein of unknown function compare
PP_0378 -0.9 -2.5 Pyrroloquinoline-quinone synthase compare
PP_0757 -0.9 -2.2 conserved protein of unknown function compare
PP_4826 -0.9 -2.5 Precorrin-3B C17-methyltransferase compare
PP_3277 -0.9 -2.1 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_2737 -0.9 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1692 -0.9 -1.2 conserved protein of unknown function compare
PP_4662 -0.9 -1.1 conserved protein of unknown function compare
PP_4338 -0.9 -2.8 Chemotaxis histidine kinase CheA compare
PP_2520 -0.9 -1.6 conserved protein of unknown function compare
PP_3041 -0.9 -2.3 conserved protein of unknown function compare
PP_3362 -0.9 -2.4 Transcriptional regulator, AsnC family compare
PP_4355 -0.9 -0.7 flagellar export apparatus subunit compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms