Experiment set19IT049 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -6.6 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5621 -6.6 -2.7 protein of unknown function compare
PP_1986 -6.1 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0232 -5.4 -1.3 ATP-binding taurine transporter subunit compare
PP_0566 -5.2 -1.3 translation-related factor compare
PP_3903 -5.1 -2.4 conserved protein of unknown function compare
PP_5014 -5.0 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -4.9 -3.4 Nitrogen regulation protein NR(I) compare
PP_5155 -4.9 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0377 -4.8 -1.6 coenzyme PQQ synthesis protein D compare
PP_0593 -4.7 -1.1 putative ribosome-binding factor compare
PP_0406 -4.7 -3.2 Nucleotidyltransferase family protein compare
PP_4561 -4.7 -1.1 stress response protein compare
PP_3392 -4.6 -1.6 conserved protein of unknown function compare
PP_5347 -4.6 -10.6 pyruvate carboxylase subunit A compare
PP_5346 -4.5 -9.4 pyruvate carboxylase subunit B compare
PP_0289 -4.0 -6.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0083 -3.9 -7.4 tryptophan synthase beta chain compare
PP_5393 -3.9 -1.3 putative metal-binding chaperone compare
PP_0967 -3.9 -6.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -3.8 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1985 -3.8 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_4917 -3.7 -5.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5028 -3.6 -2.5 proline iminopeptidase compare
PP_0206 -3.5 -3.7 Ferredoxin, 4Fe-4S compare
PP_4126 -3.3 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_0290 -3.2 -5.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1097 -3.1 -1.0 Methionine--tRNA ligase compare
PP_5097 -3.1 -7.8 homoserine O-acetyltransferase compare
PP_0082 -3.1 -3.9 tryptophan synthase alpha chain compare
PP_3417 -3.0 -3.4 D-gluconate transporter compare
PP_1987 -3.0 -1.9 Methlytransferase, UbiE/COQ5 family compare
PP_3999 -3.0 -7.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4785 -2.9 -3.9 conserved exported protein of unknown function compare
PP_1988 -2.8 -4.7 3-isopropylmalate dehydrogenase compare
PP_5348 -2.7 -4.6 Transcriptional regulator, LysR family compare
PP_2371 -2.7 -3.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4678 -2.7 -7.5 Ketol-acid reductoisomerase compare
PP_1428 -2.7 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_0366 -2.6 -2.9 dethiobiotin synthetase compare
PP_3726 -2.6 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_5528 -2.6 -1.6 conserved protein of unknown function compare
PP_4098 -2.6 -2.5 UvrABC system protein C compare
PP_3806 -2.6 -3.4 Hydrolase, isochorismatase family compare
PP_0195 -2.5 -2.2 conserved protein of unknown function compare
PP_5095 -2.5 -1.2 pyrroline-5-carboxylate reductase compare
PP_0957 -2.5 -1.4 D-arabinose 5-phosphate isomerase compare
PP_0362 -2.5 -6.1 Biotin synthase compare
PP_2107 -2.5 -2.1 conserved protein of unknown function compare
PP_1025 -2.4 -6.9 2-isopropylmalate synthase compare
PP_1679 -2.4 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3198 -2.4 -1.4 Ferredoxin, 2Fe-2S compare
PP_0184 -2.3 -3.4 Argininosuccinate lyase compare
PP_2328 -2.3 -3.7 Phosphoadenosine phosphosulfate reductase compare
PP_5098 -2.3 -4.0 methionine biosynthesis protein MetW compare
PP_4909 -2.2 -3.9 phosphoserine phosphatase compare
PP_4680 -2.2 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1001 -2.2 -3.0 arginine deiminase compare
PP_0547 -2.2 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0966 -2.2 -4.3 Histidinol dehydrogenase compare
PP_0363 -2.1 -5.6 8-amino-7-oxononanoate synthase compare
PP_0364 -2.1 -4.7 pimeloyl-[acp] methyl ester esterase compare
PP_2530 -2.1 -2.1 conserved protein of unknown function compare
PP_5705 -2.1 -1.5 protein of unknown function compare
PP_4268 -2.1 -1.4 nucleoid-associated broad specificity regulator compare
PP_0422 -2.1 -4.7 Indole-3-glycerol phosphate synthase compare
PP_4895 -2.1 -1.4 tRNA dimethylallyltransferase compare
PP_2378 -2.1 -2.2 Fe/S biogenesis protein NfuA compare
PP_4964 -2.1 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_3409 -2.0 -2.2 putative Cobalamin biosynthesis protein cobE compare
PP_1231 -2.0 -3.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1654 -2.0 -2.7 cysteine synthase B compare
PP_1022 -2.0 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_5217 -2.0 -5.6 Polyphosphate kinase compare
PP_5546 -2.0 -1.8 conserved protein of unknown function compare
PP_0801 -1.9 -1.1 conserved exported protein of unknown function compare
PP_2044 -1.9 -2.0 conserved inner membrane protein of unknown function compare
PP_2337 -1.9 -1.7 aconitate isomerase compare
PP_2203 -1.9 -1.6 conserved protein of unknown function compare
PP_5025 -1.9 -5.1 Glucans biosynthesis glucosyltransferase H compare
PP_1017 -1.9 -2.7 mannose/glucose ABC transporter, permease protein conserved
PP_2370 -1.8 -1.6 conserved protein of unknown function compare
PP_1079 -1.8 -2.7 Ornithine carbamoyltransferase compare
PP_0025 -1.8 -1.1 hypothetical protein compare
PP_5508 -1.8 -1.2 conserved protein of unknown function compare
PP_4480 -1.8 -4.7 arginine N-succinyltransferase, subunit alpha compare
PP_0065 -1.8 -2.6 NAD-binding component of TrK potassium transporter compare
PP_1589 -1.8 -5.0 uridylyltransferase compare
PP_4700 -1.8 -2.8 pantothenate synthetase compare
PP_3318 -1.7 -1.0 conserved protein of unknown function compare
PP_3883 -1.7 -1.6 putative Phage holin compare
PP_2001 -1.7 -3.7 O-succinylhomoserine sulfhydrylase compare
PP_1664 -1.7 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_2903 -1.7 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2653 -1.7 -1.2 Transcriptional regulator, Cro/CI family compare
PP_0719 -1.7 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_3398 -1.7 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0291 -1.7 -1.4 conserved protein of unknown function compare
PP_5303 -1.7 -1.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4503 -1.7 -2.0 DNA-binding response regulator compare
PP_0365 -1.7 -3.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1214 -1.7 -1.5 putative transcriptional regulatory protein compare
PP_2168 -1.6 -4.1 Transaldolase compare
PP_4804 -1.6 -1.6 RlpA-like lipoprotein compare
PP_2900 -1.6 -1.0 conserved protein of unknown function compare
PP_5748 -1.6 -1.0 cytochrome c heme lyase subunit compare
PP_1995 -1.6 -3.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5094 -1.6 -3.0 putative enzyme with PLP binding domain compare
PP_1493 -1.6 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4531 -1.6 -1.5 conserved exported protein of unknown function compare
PP_0989 -1.5 -2.0 glycine cleavage system H protein 1 compare
PP_1426 -1.5 -6.0 L-aspartate oxidase compare
PP_1009 -1.5 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5093 -1.5 -0.7 twitching motility protein compare
PP_3804 -1.5 -2.8 conserved exported protein of unknown function compare
PP_4693 -1.5 -3.2 RNA polymerase-binding transcription factor DksA compare
PP_5128 -1.5 -4.0 Dihydroxy-acid dehydratase compare
PP_0711 -1.5 -2.0 putative hydrolase compare
PP_5058 -1.5 -2.4 Carboxy-terminal-processing protease compare
PP_4984 -1.5 -4.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0775 -1.5 -1.5 conserved protein of unknown function compare
PP_4223 -1.5 -1.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1304 -1.5 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3693 -1.5 -2.3 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4695 -1.4 -5.1 Sensory box histidine kinase compare
PP_4811 -1.4 -2.2 Gamma-glutamyl phosphate reductase compare
PP_1629 -1.4 -3.1 Protein RecA compare
PP_4379 -1.4 -2.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5110 -1.4 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5027 -1.4 -1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5583 -1.4 -1.3 conserved protein of unknown function compare
PP_0122 -1.4 -1.9 conserved exported protein of unknown function compare
PP_2740 -1.4 -1.4 Transcriptional regulator, MerR family compare
PP_0834 -1.4 -1.1 Sec translocation complex subunit YajC compare
PP_0307 -1.4 -1.4 conserved exported protein of unknown function compare
PP_5026 -1.4 -3.4 Glucans biosynthesis protein G compare
PP_0440 -1.4 -2.3 Elongation factor Tu-A compare
PP_4556 -1.4 -2.1 conserved protein of unknown function compare
PP_1766 -1.4 -2.6 methylthioribose-1-phosphate isomerase compare
PP_1511 -1.4 -1.7 conserved protein of unknown function compare
PP_0401 -1.3 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_2136 -1.3 -2.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4122 -1.3 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1677 -1.3 -2.1 Adenosyl-cobyric acid synthase compare
PP_3449 -1.3 -1.7 conserved exported protein of unknown function compare
PP_3898 -1.3 -2.8 conserved protein of unknown function compare
PP_3480 -1.3 -1.6 conserved protein of unknown function compare
PP_5610 -1.3 -0.8 protein of unknown function compare
PP_1774 -1.3 -1.6 conserved exported protein of unknown function compare
PP_2756 -1.3 -1.6 conserved protein of unknown function compare
PP_1912 -1.3 -2.4 Phosphate acyltransferase compare
PP_4699 -1.3 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4120 -1.3 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_5100 -1.3 -1.6 dITP/XTP pyrophosphatase compare
PP_2144 -1.3 -1.9 Transcriptional regulator, TetR family compare
PP_1026 -1.3 -2.2 Peptidase, M23/M37 family compare
PP_4340 -1.3 -2.4 response regulator for chemotactic signal transduction compare
PP_1293 -1.3 -1.2 molybdopterin synthase small subunit compare
PP_1348 -1.3 -3.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1011 -1.2 -3.1 glucokinase compare
PP_5295 -1.2 -1.0 conserved protein of unknown function compare
PP_1088 -1.2 -3.4 Argininosuccinate synthase compare
PP_0524 -1.2 -2.4 putative Periplasmic cobalamin-binding protein HutB compare
PP_0839 -1.2 -1.8 tRNA Cm32/Um32 methyltransferase compare
PP_2345 -1.2 -1.5 conserved exported protein of unknown function compare
PP_5289 -1.2 -1.6 Acetylglutamate kinase compare
PP_5104 -1.2 -3.0 thiazole synthase compare
PP_4253 -1.2 -1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3884 -1.2 -1.5 Phage holin, lambda family compare
PP_1074 -1.2 -1.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5619 -1.2 -1.2 protein of unknown function compare
PP_0900 -1.2 -2.8 PAP2 family protein compare
PP_2504 -1.2 -2.0 putative tautomerase K2 compare
PP_4828 -1.2 -0.7 Precorrin-8X methylmutase compare
PP_1396 -1.2 -2.2 conserved protein of unknown function compare
PP_0246 -1.2 -2.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_1783 -1.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_t57 -1.2 -1.8 tRNA-Arg compare
PP_5339 -1.2 -3.0 transcriptional regulator, ornithine utilization compare
PP_5687 -1.1 -2.4 putative permease of the major facilitator superfamily compare
PP_1020 -1.1 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_t10 -1.1 -0.8 tRNA-Pro compare
PP_5114 -1.1 -1.5 putative adenine methyltransferase compare
PP_2417 -1.1 -1.3 putative Iron ABC transporter, permease protein compare
PP_3359 -1.1 -2.0 putative Hydroxycinnamic acid degradation regulator compare
PP_0673 -1.1 -1.1 conserved protein of unknown function compare
PP_0962 -1.1 -1.4 toluene-tolerance protein compare
PP_2375 -1.1 -4.8 cobalamin-dependent methionine synthase compare
PP_5639 -1.1 -3.7 conserved exported protein of unknown function compare
PP_0979 -1.1 -3.0 DNA polymerase III subunit chi compare
PP_2539 -1.1 -2.3 Transcriptional regulator, LysR family compare
PP_5202 -1.1 -1.9 putative cell division protein compare
PP_2118 -1.1 -1.3 conserved protein of unknown function compare
PP_2081 -1.1 -3.2 putative phosphoenolpyruvate synthase regulatory protein compare
PP_4859 -1.1 -3.0 Transcriptional regulator, TetR family compare
PP_4451 -1.1 -2.5 conserved protein of unknown function compare
PP_3902 -1.1 -0.7 conserved protein of unknown function compare
PP_5227 -1.0 -2.9 diaminopimelate decarboxylase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms