Experiment set19IT049 for Pseudomonas putida KT2440
D-Glucose carbon source
Group: carbon sourceMedia: soilextract_PNNL_Prosser_PlotA_B_20191220 + D-Glucose (10 mM) + Ammonium chloride (10 mM)
Culturing: Putida_ML5_PNNL, 96 deep-well microplate; 1 mL volume, Aerobic, at 30 (C)
By: Joshua Elmore on 1/6/20
Specific Phenotypes
For 6 genes in this experiment
For carbon source D-Glucose in Pseudomonas putida KT2440
For carbon source D-Glucose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Lysine degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Fatty acid biosynthesis
- Ubiquinone and menaquinone biosynthesis
- Bisphenol A degradation
- N-Glycan biosynthesis
- O-Glycan biosynthesis
- High-mannose type N-glycan biosynthesis
- O-Mannosyl glycan biosynthesis
- Keratan sulfate biosynthesis
- Lipopolysaccharide biosynthesis
- Peptidoglycan biosynthesis
- Glycerolipid metabolism
- Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
- Glycerophospholipid metabolism
- alpha-Linolenic acid metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Benzoate degradation via CoA ligation
- Limonene and pinene degradation
- Carotenoid biosynthesis - General
- Zeatin biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Flavone and flavonol biosynthesis
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| acyl-CoA hydrolysis | 1 | 1 | 1 |
| palmitoleate biosynthesis II (plants and bacteria) | 2 | 1 | 1 |
| phospholipid remodeling (phosphatidylethanolamine, yeast) | 4 | 2 | 1 |
| cis-vaccenate biosynthesis | 5 | 5 | 1 |
| palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) | 9 | 9 | 1 |
| superpathway of unsaturated fatty acids biosynthesis (E. coli) | 20 | 20 | 2 |
| superpathway of fatty acids biosynthesis (E. coli) | 53 | 51 | 2 |