Experiment set19IT048 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21565 -9.3 -3.7 flagellar basal body rod protein FlgC compare
PS417_05635 -9.0 -4.8 membrane protein compare
PS417_19795 -8.5 -8.7 flagellar assembly protein FliH compare
PS417_18595 -8.3 -3.0 3-isopropylmalate dehydratase compare
PS417_18600 -8.1 -2.5 isopropylmalate isomerase compare
PS417_25720 -7.9 -6.5 anthranilate synthase component II compare
PS417_19740 -7.7 -6.4 flagellar biosynthesis protein flip compare
PS417_21595 -7.6 -3.8 flagellar biosynthesis protein FlgN compare
PS417_01565 -7.6 -3.2 imidazole glycerol phosphate synthase compare
PS417_19860 -7.6 -15.4 flagellar hook protein FlgL compare
PS417_02510 -7.3 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19840 -7.2 -9.8 flagellar cap protein FliD compare
PS417_18560 -7.1 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19745 -7.1 -6.3 flagellar assembly protein FliO compare
PS417_19660 -7.0 -6.0 cobalamin biosynthesis protein CobQ compare
PS417_19880 -6.8 -7.3 flagellar basal body L-ring protein compare
PS417_19650 -6.8 -3.2 chemotaxis protein CheW compare
PS417_01855 -6.7 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_19785 -6.7 -3.2 flagellar biogenesis protein compare
PS417_19710 -6.7 -10.8 flagellar biosynthesis protein FlhA compare
PS417_02005 -6.7 -10.2 glutamate synthase compare
PS417_01955 -6.7 -4.6 peptidase compare
PS417_19800 -6.6 -1.7 flagellar motor switch protein FliG compare
PS417_19825 -6.6 -10.8 ATPase AAA compare
PS417_01575 -6.6 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19675 -6.6 -3.5 chemotaxis protein CheY compare
PS417_23950 -6.6 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_21585 -6.6 -7.2 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21570 -6.5 -5.1 flagellar basal body rod protein FlgB compare
PS417_25725 -6.4 -14.4 anthranilate synthase component I compare
PS417_26740 -6.4 -7.1 homoserine acetyltransferase compare
PS417_19765 -6.3 -6.1 flagellar hook-length control protein compare
PS417_04415 -6.3 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27040 -6.3 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_19730 -6.2 -2.6 flagellar biosynthesis protein FliR compare
PS417_19885 -6.2 -1.5 flagellar basal body rod protein FlgG compare
PS417_02280 -6.2 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_00185 -6.2 -2.9 tryptophan synthase subunit beta compare
PS417_19725 -6.1 -5.3 flagellar biosynthesis protein FlhB compare
PS417_19850 -6.1 -10.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23810 -6.1 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_19665 -6.0 -3.4 flagellar motor protein MotD compare
PS417_19870 -6.0 -3.1 flagellar rod assembly protein FlgJ compare
PS417_21555 -5.9 -9.6 flagellar hook protein FlgE compare
PS417_23800 -5.7 -13.9 ketol-acid reductoisomerase compare
PS417_23545 -5.6 -2.0 gamma-glutamyl kinase compare
PS417_19805 -5.6 -2.9 flagellar M-ring protein FliF compare
PS417_21390 -5.4 -4.9 hypothetical protein compare
PS417_09245 -5.3 -1.7 recombinase RdgC compare
PS417_19735 -5.3 -5.0 flagellar biosynthesis protein FliQ compare
PS417_27865 -5.3 -3.1 LysR family transcriptional regulator compare
PS417_18585 -5.2 -4.9 3-isopropylmalate dehydrogenase compare
PS417_01560 -5.2 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_04420 -5.2 -9.3 histidinol dehydrogenase compare
PS417_18540 -5.1 -3.7 colicin V production CvpA compare
PS417_21575 -5.1 -4.7 chemotaxis protein compare
PS417_20160 -5.1 -4.8 cysteine synthase compare
PS417_01850 -5.0 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06200 -4.9 -7.0 protein-PII uridylyltransferase compare
PS417_02225 -4.8 -2.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_19865 -4.8 -8.1 flagellar hook protein FlgK compare
PS417_19835 -4.7 -1.2 flagellar biosynthesis protein FliS compare
PS417_24745 -4.6 -1.8 gamma-glutamyl phosphate reductase compare
PS417_23805 -4.6 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_20105 -4.6 -19.4 glycosyl transferase compare
PS417_08220 -4.5 -0.8 epimerase compare
PS417_27835 -4.5 -6.6 endoribonuclease compare
PS417_03560 -4.4 -1.6 GTP-binding protein compare
PS417_19705 -4.4 -2.5 flagellar biosynthesis regulator FlhF compare
PS417_22445 -4.3 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_27795 -4.3 -0.8 orotate phosphoribosyltransferase compare
PS417_25710 -4.3 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_23995 -4.2 -0.8 preprotein translocase subunit SecG compare
PS417_26890 -4.2 -5.3 dihydroxy-acid dehydratase compare
PS417_12855 -4.1 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26745 -4.1 -4.4 methionine biosynthesis protein MetW compare
PS417_25715 -4.1 -4.1 anthranilate phosphoribosyltransferase compare
PS417_04440 -4.1 -2.0 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_05595 -4.1 -10.9 ornithine carbamoyltransferase compare
PS417_08185 -4.1 -4.1 glycosyl transferase compare
PS417_01915 -4.0 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22520 -4.0 -1.4 histidine kinase compare
PS417_06375 -4.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_01580 -4.0 -1.0 imidazole glycerol phosphate synthase compare
PS417_27245 -3.9 -4.8 aminotransferase DegT compare
PS417_19695 -3.9 -3.8 flagellar biosynthesis sigma factor compare
PS417_04875 -3.9 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02415 -3.9 -4.9 phosphoserine phosphatase compare
PS417_19690 -3.9 -2.1 histidine kinase compare
PS417_02000 -3.8 -7.7 glutamate synthase compare
PS417_11830 -3.8 -2.6 membrane protein compare
PS417_21125 -3.8 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_07245 -3.7 -2.2 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_08155 -3.7 -1.4 integration host factor subunit beta compare
PS417_01635 -3.7 -4.3 nitrogen regulation protein NR(I) compare
PS417_02880 -3.6 -1.3 copper chaperone compare
PS417_08540 -3.6 -1.7 RNA helicase compare
PS417_27195 -3.6 -0.9 N-acetylglutamate synthase compare
PS417_26240 -3.6 -1.9 N-methylproline demethylase compare
PS417_08620 -3.5 -0.9 hypothetical protein compare
PS417_04585 -3.5 -1.5 hypothetical protein compare
PS417_00385 -3.5 -0.9 Fur family transcriptional regulator compare
PS417_27595 -3.4 -2.2 recombinase XerC compare
PS417_22450 -3.4 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_26985 -3.4 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19755 -3.3 -1.6 flagellar motor switch protein FliM compare
PS417_20095 -3.3 -10.2 hypothetical protein compare
PS417_28220 -3.3 -1.8 LysR family transcriptional regulator compare
PS417_07560 -3.3 -1.5 universal stress protein UspA compare
PS417_06370 -3.3 -1.2 cold-shock protein compare
PS417_00180 -3.3 -1.8 tryptophan synthase subunit alpha compare
PS417_19820 -3.3 -3.9 histidine kinase compare
PS417_20635 -3.3 -0.8 ABC transporter ATP-binding protein compare
PS417_09085 -3.2 -1.2 hypothetical protein compare
PS417_06680 -3.2 -8.6 nuclease PIN compare
PS417_19790 -3.1 -1.9 ATP synthase compare
PS417_01640 -3.1 -3.9 histidine kinase compare
PS417_25910 -3.1 -6.1 amine oxidase compare
PS417_20610 -3.0 -1.0 hypothetical protein compare
PS417_19630 -3.0 -2.6 LuxR family transcriptional regulator compare
PS417_23110 -3.0 -4.7 2-isopropylmalate synthase compare
PS417_02210 -3.0 -4.5 diguanylate cyclase compare
PS417_22990 -3.0 -1.3 iron dicitrate transport regulator FecR compare
PS417_08225 -2.9 -2.6 acetolactate synthase compare
PS417_18070 -2.9 -0.9 general secretion pathway protein GspH compare
PS417_18530 -2.9 -2.5 O-succinylhomoserine sulfhydrylase compare
PS417_08195 -2.9 -6.9 hypothetical protein compare
PS417_02485 -2.9 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27940 -2.9 -1.7 type VI secretion protein compare
PS417_27870 -2.9 -3.1 ATP-dependent DNA helicase RecG compare
PS417_07620 -2.8 -1.4 beta-hexosaminidase compare
PS417_05975 -2.8 -0.7 chemotaxis protein CheW compare
PS417_27800 -2.8 -1.9 exodeoxyribonuclease III compare
PS417_08130 -2.8 -2.2 aspartate aminotransferase compare
PS417_08125 -2.8 -0.5 prephenate dehydratase compare
PS417_20880 -2.8 -1.9 GntR family transcriptional regulator compare
PS417_26995 -2.8 -6.1 phosphoserine phosphatase compare
PS417_16490 -2.8 -1.2 cell division protein FtsK compare
PS417_17215 -2.8 -2.7 peptidylprolyl isomerase compare
PS417_12565 -2.7 -2.3 2-dehydro-3-deoxygluconokinase compare
PS417_20090 -2.7 -6.6 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_11585 -2.7 -2.5 LuxR family transcriptional regulator compare
PS417_04650 -2.7 -0.7 D-alanine--D-alanine ligase compare
PS417_07575 -2.7 -3.4 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_01570 -2.6 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06530 -2.6 -1.9 membrane protein compare
PS417_04080 -2.6 -1.7 peptide ABC transporter substrate-binding protein compare
PS417_05815 -2.6 -2.9 recombinase RecA compare
PS417_26730 -2.6 -0.7 pyrroline-5-carboxylate reductase compare
PS417_07870 -2.6 -2.2 hypothetical protein compare
PS417_01920 -2.6 -0.6 ATP-dependent protease subunit HslV compare
PS417_23770 -2.6 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_02385 -2.5 -1.1 esterase compare
PS417_20650 -2.5 -8.1 hypothetical protein compare
PS417_15100 -2.5 -1.7 BatB protein compare
PS417_02555 -2.5 -11.4 exoribonuclease R compare
PS417_08135 -2.5 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07170 -2.5 -3.6 hypothetical protein compare
PS417_23025 -2.5 -4.5 murein transglycosylase compare
PS417_16370 -2.5 -7.0 chemotaxis protein CheY compare
PS417_07565 -2.4 -2.3 hypothetical protein compare
PS417_10720 -2.4 -5.9 chemotaxis protein CheY compare
PS417_19645 -2.4 -1.3 chemotaxis protein compare
PS417_08190 -2.4 -8.3 membrane protein compare
PS417_09300 -2.4 -1.9 peptidylprolyl isomerase compare
PS417_15285 -2.4 -0.8 type VI secretion protein compare
PS417_00845 -2.4 -1.2 transcriptional regulator compare
PS417_15805 -2.4 -1.3 transporter compare
PS417_18690 -2.4 -2.6 aromatic amino acid aminotransferase compare
PS417_19685 -2.3 -5.7 protein phosphatase compare
PS417_16510 -2.3 -2.2 Clp protease ClpX compare
PS417_10245 -2.3 -1.4 hypothetical protein compare
PS417_12310 -2.3 -6.6 methionine synthase compare
PS417_01405 -2.2 -2.0 sugar transporter compare
PS417_03165 -2.2 -3.4 hypothetical protein compare
PS417_04385 -2.2 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_22565 -2.2 -0.7 formyltetrahydrofolate deformylase compare
PS417_03260 -2.2 -1.0 5S ribosomal RNA compare
PS417_19830 -2.2 -1.7 flagellar assembly protein FliT compare
PS417_14515 -2.2 -1.2 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_06895 -2.2 -2.8 DNA-binding protein compare
PS417_24710 -2.2 -3.7 lipoprotein compare
PS417_24800 -2.1 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_09705 -2.1 -2.8 hypothetical protein compare
PS417_08320 -2.1 -2.2 metal-chelation protein CHAD compare
PS417_08335 -2.1 -1.6 hypothetical protein compare
PS417_03455 -2.1 -1.1 type III secretion protein compare
PS417_03380 -2.1 -0.9 hypothetical protein compare
PS417_02695 -2.1 -1.1 protein hupE compare
PS417_15105 -2.1 -5.0 membrane protein compare
PS417_25225 -2.1 -1.5 MFS transporter compare
PS417_13510 -2.1 -0.7 polyketide cyclase compare
PS417_05575 -2.1 -7.3 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_14065 -2.1 -6.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08245 -2.1 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21560 -2.1 -1.8 flagellar basal body rod modification protein FlgD compare
PS417_08170 -2.1 -6.6 capsular biosynthesis protein compare
PS417_19615 -2.0 -6.3 chemotaxis protein CheW compare
PS417_19720 -2.0 -1.1 DNA-binding protein compare
PS417_27010 -2.0 -4.1 threonine dehydratase compare


Specific Phenotypes

For 4 genes in this experiment