Experiment set19IT043 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19835 -4.8 -2.3 flagellar biosynthesis protein FliS compare
PS417_09725 -4.8 -10.2 transporter compare
PS417_01855 -4.4 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_27795 -4.4 -1.5 orotate phosphoribosyltransferase compare
PS417_23995 -4.2 -1.5 preprotein translocase subunit SecG compare
PS417_02415 -4.0 -7.6 phosphoserine phosphatase compare
PS417_01580 -3.9 -1.7 imidazole glycerol phosphate synthase compare
PS417_27195 -3.7 -1.7 N-acetylglutamate synthase compare
PS417_27040 -3.6 -3.6 3-phosphoglycerate dehydrogenase compare
PS417_24745 -3.6 -5.5 gamma-glutamyl phosphate reductase compare
PS417_22450 -3.6 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_04420 -3.6 -9.7 histidinol dehydrogenase compare
PS417_03260 -3.4 -1.4 5S ribosomal RNA compare
PS417_21575 -3.1 -8.9 chemotaxis protein compare
PS417_27800 -3.1 -2.1 exodeoxyribonuclease III compare
PS417_00180 -3.0 -3.5 tryptophan synthase subunit alpha compare
PS417_08155 -3.0 -2.1 integration host factor subunit beta compare
PS417_14940 -2.9 -2.6 LysR family transcriptional regulator compare
PS417_08135 -2.8 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08125 -2.8 -1.0 prephenate dehydratase compare
PS417_19840 -2.8 -13.2 flagellar cap protein FliD compare
PS417_19860 -2.8 -15.8 flagellar hook protein FlgL compare
PS417_18560 -2.8 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19850 -2.8 -10.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19785 -2.7 -5.2 flagellar biogenesis protein compare
PS417_08730 -2.7 -2.5 cytochrome C compare
PS417_01575 -2.7 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_06200 -2.7 -7.9 protein-PII uridylyltransferase compare
PS417_04415 -2.7 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_19690 -2.7 -7.9 histidine kinase compare
PS417_03560 -2.6 -2.3 GTP-binding protein compare
PS417_26730 -2.6 -1.3 pyrroline-5-carboxylate reductase compare
PS417_19650 -2.6 -3.9 chemotaxis protein CheW compare
PS417_08540 -2.6 -3.3 RNA helicase compare
PS417_25720 -2.6 -5.9 anthranilate synthase component II compare
PS417_19885 -2.5 -4.2 flagellar basal body rod protein FlgG compare
PS417_19865 -2.5 -10.5 flagellar hook protein FlgK compare
PS417_02510 -2.4 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01565 -2.4 -5.1 imidazole glycerol phosphate synthase compare
PS417_19880 -2.4 -8.8 flagellar basal body L-ring protein compare
PS417_04595 -2.4 -3.1 cell division protein MraZ compare
PS417_21570 -2.4 -7.3 flagellar basal body rod protein FlgB compare
PS417_23810 -2.4 -8.6 acetolactate synthase 3 catalytic subunit compare
PS417_06680 -2.4 -8.2 nuclease PIN compare
PS417_19730 -2.4 -4.7 flagellar biosynthesis protein FliR compare
PS417_25725 -2.4 -11.0 anthranilate synthase component I compare
PS417_19725 -2.4 -7.9 flagellar biosynthesis protein FlhB compare
PS417_19790 -2.3 -4.9 ATP synthase compare
PS417_19795 -2.3 -15.0 flagellar assembly protein FliH compare
PS417_20785 -2.3 -3.9 transcriptional regulator compare
PS417_21595 -2.3 -5.6 flagellar biosynthesis protein FlgN compare
PS417_19660 -2.3 -6.8 cobalamin biosynthesis protein CobQ compare
PS417_06375 -2.3 -1.1 deoxycytidine triphosphate deaminase compare
PS417_21585 -2.3 -9.6 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 -2.3 -11.6 flagellar biosynthesis sigma factor compare
PS417_01915 -2.3 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22570 -2.3 -1.3 H-NS histone compare
PS417_21565 -2.3 -3.8 flagellar basal body rod protein FlgC compare
PS417_19735 -2.2 -5.0 flagellar biosynthesis protein FliQ compare
PS417_21555 -2.2 -10.5 flagellar hook protein FlgE compare
PS417_19710 -2.2 -13.2 flagellar biosynthesis protein FlhA compare
PS417_19745 -2.2 -10.7 flagellar assembly protein FliO compare
PS417_01605 -2.1 -1.9 phosphoglycerate mutase compare
PS417_23770 -2.1 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_00185 -2.1 -2.9 tryptophan synthase subunit beta compare
PS417_20705 -2.1 -4.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_17565 -2.1 -3.8 branched-chain amino acid aminotransferase compare
PS417_23805 -2.1 -5.6 acetolactate synthase 3 regulatory subunit compare
PS417_20985 -2.1 -2.7 porin compare
PS417_19765 -2.1 -11.6 flagellar hook-length control protein compare
PS417_23545 -2.0 -1.7 gamma-glutamyl kinase compare
PS417_19800 -2.0 -3.9 flagellar motor switch protein FliG compare
PS417_19675 -2.0 -4.0 chemotaxis protein CheY compare
PS417_08025 -2.0 -1.9 acetylornithine aminotransferase compare
PS417_19740 -2.0 -10.3 flagellar biosynthesis protein flip compare
PS417_19805 -1.9 -5.3 flagellar M-ring protein FliF compare
PS417_05635 -1.9 -7.0 membrane protein compare
PS417_01850 -1.9 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02975 -1.9 -2.8 3-dehydroquinate dehydratase compare
PS417_18530 -1.8 -4.6 O-succinylhomoserine sulfhydrylase compare
PS417_23800 -1.8 -8.9 ketol-acid reductoisomerase compare
PS417_00385 -1.8 -1.4 Fur family transcriptional regulator compare
PS417_19870 -1.8 -3.4 flagellar rod assembly protein FlgJ compare
PS417_22565 -1.8 -1.2 formyltetrahydrofolate deformylase compare
PS417_26890 -1.8 -4.6 dihydroxy-acid dehydratase compare
PS417_19825 -1.7 -10.6 ATPase AAA compare
PS417_25715 -1.7 -3.6 anthranilate phosphoribosyltransferase compare
PS417_01640 -1.7 -5.5 histidine kinase compare
PS417_16555 -1.7 -1.9 cupin compare
PS417_26990 -1.7 -1.1 RNA pyrophosphohydrolase compare
PS417_26740 -1.7 -6.1 homoserine acetyltransferase compare
PS417_18310 -1.6 -2.2 hypothetical protein compare
PS417_07565 -1.6 -3.0 hypothetical protein compare
PS417_22445 -1.6 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_01635 -1.6 -5.6 nitrogen regulation protein NR(I) compare
PS417_19755 -1.5 -2.5 flagellar motor switch protein FliM compare
PS417_27870 -1.5 -3.3 ATP-dependent DNA helicase RecG compare
PS417_21560 -1.5 -3.1 flagellar basal body rod modification protein FlgD compare
PS417_01560 -1.5 -2.9 imidazoleglycerol-phosphate dehydratase compare
PS417_02555 -1.5 -8.8 exoribonuclease R compare
PS417_27865 -1.4 -2.8 LysR family transcriptional regulator compare
PS417_23375 -1.4 -1.6 cytochrome C oxidase compare
PS417_26745 -1.4 -4.3 methionine biosynthesis protein MetW compare
PS417_07470 -1.4 -1.6 hypothetical protein compare
PS417_27875 -1.4 -7.3 histidine kinase compare
PS417_02485 -1.4 -4.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_03465 -1.4 -1.3 type III secretion protein compare
PS417_19830 -1.4 -4.4 flagellar assembly protein FliT compare
PS417_02560 -1.3 -1.9 23S rRNA methyltransferase compare
PS417_15820 -1.3 -2.4 universal stress protein UspA compare
PS417_06530 -1.3 -2.0 membrane protein compare
PS417_20610 -1.3 -1.8 hypothetical protein compare
PS417_08130 -1.3 -2.2 aspartate aminotransferase compare
PS417_28070 -1.3 -6.2 phosphate ABC transporter ATP-binding protein compare
PS417_10810 -1.3 -1.9 hypothetical protein compare
PS417_00455 -1.3 -1.8 hypothetical protein compare
PS417_19655 -1.3 -2.7 chemotaxis protein CheW compare
PS417_09705 -1.3 -4.0 hypothetical protein compare
PS417_26370 -1.2 -2.2 RNA helicase compare
PS417_23950 -1.2 -1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_07615 -1.2 -4.8 TetR family transcriptional regulator compare
PS417_04305 -1.2 -1.5 aspartate ammonia-lyase compare
PS417_12310 -1.2 -6.6 methionine synthase compare
PS417_20700 -1.2 -6.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_25315 -1.2 -4.1 membrane protein compare
PS417_08090 -1.2 -0.8 3-oxoacyl-ACP reductase compare
PS417_05025 -1.2 -2.1 maleylacetoacetate isomerase compare
PS417_01570 -1.2 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_19335 -1.2 -2.9 isochorismatase compare
PS417_09720 -1.2 -2.6 methyltransferase compare
PS417_05595 -1.2 -7.0 ornithine carbamoyltransferase compare
PS417_24500 -1.2 -3.7 DEAD/DEAH box helicase compare
PS417_23025 -1.1 -4.6 murein transglycosylase compare
PS417_04915 -1.1 -1.9 glutamine ABC transporter ATP-binding protein compare
PS417_09085 -1.1 -0.9 hypothetical protein compare
PS417_22520 -1.1 -1.6 histidine kinase compare
PS417_27135 -1.1 -0.8 glutamine synthetase compare
PS417_20855 -1.1 -0.6 hypothetical protein compare
PS417_01955 -1.1 -5.7 peptidase compare
PS417_19665 -1.1 -2.5 flagellar motor protein MotD compare
PS417_24620 -1.1 -2.0 hypothetical protein compare
PS417_12355 -1.1 -2.1 magnesium chelatase compare
PS417_04410 -1.1 -1.2 hypothetical protein compare
PS417_05100 -1.1 -1.1 RNA polymerase sigma factor compare
PS417_21125 -1.1 -4.1 phosphoadenosine phosphosulfate reductase compare
PS417_24155 -1.1 -1.6 ATP-binding protein compare
PS417_09700 -1.1 -4.4 transaldolase compare
PS417_20125 -1.1 -2.1 phosphoribosylglycinamide formyltransferase compare
PS417_16510 -1.1 -2.4 Clp protease ClpX compare
PS417_07710 -1.1 -2.9 membrane protein compare
PS417_18205 -1.1 -1.8 aldehyde dehydrogenase compare
PS417_25710 -1.0 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_27425 -1.0 -4.8 exopolyphosphatase compare
PS417_01620 -1.0 -1.7 preprotein translocase subunit SecB compare
PS417_15085 -1.0 -3.0 ATPase AAA compare
PS417_08200 -1.0 -2.9 hypothetical protein compare
PS417_28080 -1.0 -7.1 phosphate ABC transporter permease compare
PS417_15105 -1.0 -3.8 membrane protein compare
PS417_08410 -1.0 -2.2 hypothetical protein compare
PS417_09710 -1.0 -2.2 dehydrogenase compare
PS417_04530 -1.0 -1.8 glycerate dehydrogenase compare
PS417_17560 -1.0 -3.1 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_04910 -1.0 -3.8 amino acid ABC transporter permease compare
PS417_16005 -1.0 -2.3 ATPase compare
PS417_21390 -1.0 -2.8 hypothetical protein compare
PS417_06205 -1.0 -4.8 methionine aminopeptidase compare
PS417_12035 -0.9 -1.4 dihydroxyacetone kinase compare
PS417_15095 -0.9 -1.4 hypothetical protein compare
PS417_02280 -0.9 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_02475 -0.9 -1.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_19705 -0.9 -1.3 flagellar biosynthesis regulator FlhF compare
PS417_18425 -0.9 -1.4 sporulation protein compare
PS417_03000 -0.9 -3.6 translation initiation factor Sui1 compare
PS417_20715 -0.9 -1.5 cytochrome Cbb3 compare
PS417_04905 -0.9 -3.8 amino acid ABC transporter permease compare
PS417_24710 -0.9 -4.0 lipoprotein compare
PS417_00705 -0.9 -0.6 MarR family transcriptional regulator compare
PS417_01030 -0.9 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_28225 -0.9 -1.1 hypothetical protein compare
PS417_19350 -0.9 -2.6 GTP cyclohydrolase compare
PS417_13065 -0.9 -2.0 UDP pyrophosphate phosphatase compare
PS417_20160 -0.9 -3.7 cysteine synthase compare
PS417_23910 -0.9 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_00660 -0.9 -2.2 DSBA oxidoreductase compare
PS417_12540 -0.9 -2.1 hypothetical protein compare
PS417_07560 -0.9 -1.3 universal stress protein UspA compare
PS417_25650 -0.8 -2.2 anhydro-N-acetylmuramic acid kinase compare
PS417_18455 -0.8 -2.0 hypothetical protein compare
PS417_09325 -0.8 -3.3 peptidase S41 compare
PS417_23380 -0.8 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_16055 -0.8 -2.5 biopolymer transporter TolR compare
PS417_10025 -0.8 -0.9 bacteriophage lambda NinG family protein compare
PS417_22895 -0.8 -3.6 tyrosine recombinase XerD compare
PS417_23250 -0.8 -3.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_06710 -0.8 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_00535 -0.8 -2.0 Holliday junction resolvase compare
PS417_05815 -0.8 -2.6 recombinase RecA compare
PS417_07640 -0.8 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_27990 -0.8 -2.2 hypothetical protein compare
PS417_01825 -0.8 -1.8 chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments