Experiment set19IT041 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_00370 -5.1 -1.9 hypothetical protein compare
PS417_22565 -4.4 -1.7 formyltetrahydrofolate deformylase compare
PS417_03560 -4.2 -2.9 GTP-binding protein compare
PS417_26850 -4.1 -1.6 twin-arginine translocation pathway signal protein compare
PS417_01915 -3.8 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00180 -3.6 -2.5 tryptophan synthase subunit alpha compare
PS417_24745 -3.5 -4.2 gamma-glutamyl phosphate reductase compare
PS417_09725 -3.2 -6.6 transporter compare
PS417_19835 -3.2 -2.3 flagellar biosynthesis protein FliS compare
PS417_07945 -3.1 -3.2 hypothetical protein compare
PS417_02975 -2.7 -4.5 3-dehydroquinate dehydratase compare
PS417_01580 -2.7 -2.0 imidazole glycerol phosphate synthase compare
PS417_23810 -2.6 -8.1 acetolactate synthase 3 catalytic subunit compare
PS417_21430 -2.6 -2.5 3-oxoacyl-ACP synthase compare
PS417_22210 -2.5 -2.3 AraC family transcriptional regulator compare
PS417_21630 -2.5 -3.0 magnesium transporter compare
PS417_02510 -2.5 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02415 -2.5 -5.7 phosphoserine phosphatase compare
PS417_23770 -2.4 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_04650 -2.4 -1.1 D-alanine--D-alanine ligase compare
PS417_05535 -2.4 -2.0 Fis family transcriptional regulator compare
PS417_08125 -2.4 -0.9 prephenate dehydratase compare
PS417_06685 -2.3 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_20610 -2.3 -2.0 hypothetical protein compare
PS417_23545 -2.2 -2.6 gamma-glutamyl kinase compare
PS417_21000 -2.2 -1.9 CrfX protein compare
PS417_15095 -2.2 -3.5 hypothetical protein compare
PS417_23950 -2.2 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_14980 -2.1 -1.4 universal stress protein UspA compare
PS417_16555 -2.1 -1.9 cupin compare
PS417_27800 -2.1 -2.5 exodeoxyribonuclease III compare
PS417_18310 -2.1 -2.2 hypothetical protein compare
PS417_27245 -2.1 -3.7 aminotransferase DegT compare
PS417_27865 -2.1 -2.8 LysR family transcriptional regulator compare
PS417_01855 -2.1 -2.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_27795 -2.0 -1.1 orotate phosphoribosyltransferase compare
PS417_21575 -2.0 -5.0 chemotaxis protein compare
PS417_00185 -2.0 -3.1 tryptophan synthase subunit beta compare
PS417_08220 -2.0 -1.0 epimerase compare
PS417_18560 -1.9 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04415 -1.9 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02555 -1.9 -9.0 exoribonuclease R compare
PS417_04420 -1.8 -5.7 histidinol dehydrogenase compare
PS417_22450 -1.8 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_06680 -1.8 -4.6 nuclease PIN compare
PS417_01565 -1.7 -4.9 imidazole glycerol phosphate synthase compare
PS417_15090 -1.7 -2.4 hypothetical protein compare
PS417_24155 -1.7 -1.2 ATP-binding protein compare
PS417_03260 -1.7 -1.5 5S ribosomal RNA compare
PS417_10480 -1.7 -2.4 glutathione S-transferase compare
PS417_27425 -1.6 -5.5 exopolyphosphatase compare
PS417_02280 -1.6 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_26335 -1.6 -2.2 BetI family transcriptional regulator compare
PS417_19655 -1.6 -4.9 chemotaxis protein CheW compare
PS417_19650 -1.6 -3.7 chemotaxis protein CheW compare
PS417_23775 -1.6 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_07565 -1.6 -2.2 hypothetical protein compare
PS417_16720 -1.6 -1.3 membrane protein compare
PS417_25725 -1.6 -7.8 anthranilate synthase component I compare
PS417_08135 -1.6 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23025 -1.6 -4.3 murein transglycosylase compare
PS417_14940 -1.6 -1.7 LysR family transcriptional regulator compare
PS417_01560 -1.5 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_18105 -1.5 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_06375 -1.5 -0.8 deoxycytidine triphosphate deaminase compare
PS417_04875 -1.5 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_13010 -1.5 -1.8 alpha/beta hydrolase compare
PS417_24525 -1.5 -1.6 nuclease compare
PS417_09705 -1.5 -3.1 hypothetical protein compare
PS417_25720 -1.5 -4.0 anthranilate synthase component II compare
PS417_22570 -1.5 -0.9 H-NS histone compare
PS417_26745 -1.5 -3.7 methionine biosynthesis protein MetW compare
PS417_01605 -1.5 -1.1 phosphoglycerate mutase compare
PS417_08540 -1.5 -2.1 RNA helicase compare
PS417_16750 -1.4 -1.8 ABC transporter ATP-binding protein compare
PS417_17405 -1.4 -2.0 AraC family transcriptional regulator compare
PS417_05025 -1.4 -2.1 maleylacetoacetate isomerase compare
PS417_27005 -1.4 -1.0 membrane protein compare
PS417_09545 -1.4 -2.0 aldehyde-activating protein compare
PS417_21595 -1.4 -2.9 flagellar biosynthesis protein FlgN compare
PS417_01575 -1.4 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19755 -1.4 -2.0 flagellar motor switch protein FliM compare
PS417_01965 -1.4 -1.5 fimbriae biosynthesis protein compare
PS417_18235 -1.4 -2.4 nitrile hydratase compare
PS417_16320 -1.3 -2.4 protein tyrosine phosphatase compare
PS417_23625 -1.3 -2.5 LysR family transcriptional regulator compare
PS417_21480 -1.3 -1.4 23S rRNA pseudouridylate synthase compare
PS417_26695 -1.3 -1.2 uracil phosphoribosyltransferase compare
PS417_00660 -1.3 -1.9 DSBA oxidoreductase compare
PS417_19885 -1.3 -3.4 flagellar basal body rod protein FlgG compare
PS417_27195 -1.3 -1.0 N-acetylglutamate synthase compare
PS417_27490 -1.3 -1.8 hypothetical protein compare
PS417_01635 -1.3 -2.9 nitrogen regulation protein NR(I) compare
PS417_28070 -1.3 -5.4 phosphate ABC transporter ATP-binding protein compare
PS417_27315 -1.3 -1.3 hypothetical protein compare
PS417_06205 -1.3 -5.0 methionine aminopeptidase compare
PS417_15820 -1.3 -2.2 universal stress protein UspA compare
PS417_03970 -1.2 -1.5 1-phosphofructokinase compare
PS417_23800 -1.2 -5.0 ketol-acid reductoisomerase compare
PS417_07305 -1.2 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_24895 -1.2 -0.9 hypothetical protein compare
PS417_27040 -1.2 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_02485 -1.2 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08335 -1.2 -1.4 hypothetical protein compare
PS417_19860 -1.2 -7.5 flagellar hook protein FlgL compare
PS417_19785 -1.2 -2.9 flagellar biogenesis protein compare
PS417_18395 -1.2 -2.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_19660 -1.2 -4.8 cobalamin biosynthesis protein CobQ compare
PS417_19270 -1.2 -1.9 hypothetical protein compare
PS417_19665 -1.2 -2.4 flagellar motor protein MotD compare
PS417_21625 -1.2 -1.0 DNA-binding protein compare
PS417_15105 -1.2 -4.9 membrane protein compare
PS417_21210 -1.2 -2.5 amidotransferase compare
PS417_22520 -1.2 -1.6 histidine kinase compare
PS417_26730 -1.2 -0.8 pyrroline-5-carboxylate reductase compare
PS417_20480 -1.1 -1.0 hypothetical protein compare
PS417_23805 -1.1 -3.7 acetolactate synthase 3 regulatory subunit compare
PS417_01640 -1.1 -2.7 histidine kinase compare
PS417_18425 -1.1 -1.3 sporulation protein compare
PS417_17350 -1.1 -2.4 copper resistance protein CopD compare
PS417_24500 -1.1 -1.5 DEAD/DEAH box helicase compare
PS417_22690 -1.1 -1.6 phosphogluconate dehydratase compare
PS417_07820 -1.1 -1.6 transposase compare
PS417_25715 -1.1 -3.5 anthranilate phosphoribosyltransferase compare
PS417_12735 -1.1 -1.6 peroxidase compare
PS417_07195 -1.1 -2.4 hypothetical protein compare
PS417_28145 -1.1 -2.4 AraC family transcriptional regulator compare
PS417_16510 -1.1 -3.3 Clp protease ClpX compare
PS417_25710 -1.1 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_19865 -1.1 -7.2 flagellar hook protein FlgK compare
PS417_08740 -1.1 -1.1 ribose-phosphate pyrophosphokinase compare
PS417_23135 -1.1 -1.5 GTP-binding protein compare
PS417_02575 -1.0 -1.9 membrane protein compare
PS417_14240 -1.0 -2.1 isochorismatase compare
PS417_06200 -1.0 -4.4 protein-PII uridylyltransferase compare
PS417_14760 -1.0 -1.5 membrane protein compare
PS417_19725 -1.0 -2.1 flagellar biosynthesis protein FlhB compare
PS417_26815 -1.0 -1.4 peptidase M16 compare
PS417_06970 -1.0 -2.3 LysR family transcriptional regulator compare
PS417_19350 -1.0 -3.1 GTP cyclohydrolase compare
PS417_19850 -1.0 -5.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19745 -1.0 -3.9 flagellar assembly protein FliO compare
PS417_00380 -1.0 -1.8 zinc ABC transporter ATP-binding protein compare
PS417_08090 -1.0 -0.5 3-oxoacyl-ACP reductase compare
PS417_04380 -1.0 -0.7 ABC transporter permease compare
PS417_05815 -1.0 -2.3 recombinase RecA compare
PS417_03525 -1.0 -1.2 hypothetical protein compare
PS417_19690 -1.0 -2.3 histidine kinase compare
PS417_21570 -1.0 -5.6 flagellar basal body rod protein FlgB compare
PS417_12355 -1.0 -1.2 magnesium chelatase compare
PS417_07640 -1.0 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22445 -1.0 -1.3 ATP-dependent DNA helicase RuvB compare
PS417_06600 -1.0 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19880 -1.0 -5.8 flagellar basal body L-ring protein compare
PS417_27870 -1.0 -1.8 ATP-dependent DNA helicase RecG compare
PS417_19840 -1.0 -4.8 flagellar cap protein FliD compare
PS417_09720 -1.0 -2.7 methyltransferase compare
PS417_08250 -1.0 -1.6 competence protein ComEA compare
PS417_12855 -1.0 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04595 -1.0 -1.6 cell division protein MraZ compare
PS417_26685 -1.0 -1.3 hypothetical protein compare
PS417_17325 -1.0 -3.8 dihydropyrimidine dehydrogenase compare
PS417_04410 -1.0 -0.9 hypothetical protein compare
PS417_04050 -1.0 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_20030 -0.9 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_06395 -0.9 -1.3 amino acid transporter compare
PS417_21990 -0.9 -1.6 LacI family transcriptional regulator compare
PS417_01310 -0.9 -1.9 ATPase compare
PS417_23900 -0.9 -4.0 poly(A) polymerase compare
PS417_10335 -0.9 -1.9 peroxiredoxin compare
PS417_26500 -0.9 -2.1 thioesterase compare
PS417_09700 -0.9 -2.8 transaldolase compare
PS417_19790 -0.9 -2.5 ATP synthase compare
PS417_18445 -0.9 -2.4 glycerol-3-phosphatase compare
PS417_20875 -0.9 -2.4 chromosome segregation protein SMC compare
PS417_20985 -0.9 -1.0 porin compare
PS417_22330 -0.9 -1.3 arginine deiminase compare
PS417_20960 -0.9 -3.2 Nitrate-binding regulatory protein (nasS) (from data) compare
PS417_00455 -0.9 -1.1 hypothetical protein compare
PS417_07615 -0.9 -2.4 TetR family transcriptional regulator compare
PS417_28020 -0.9 -1.4 chorismate--pyruvate lyase compare
PS417_23380 -0.9 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_21555 -0.9 -4.6 flagellar hook protein FlgE compare
PS417_20715 -0.9 -1.4 cytochrome Cbb3 compare
PS417_05940 -0.9 -2.9 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_19730 -0.9 -1.9 flagellar biosynthesis protein FliR compare
PS417_26990 -0.9 -0.5 RNA pyrophosphohydrolase compare
PS417_01590 -0.9 -1.3 polysaccharide deacetylase compare
PS417_03495 -0.9 -1.4 type III secretory protein EscS compare
PS417_19710 -0.9 -5.3 flagellar biosynthesis protein FlhA compare
PS417_13490 -0.9 -1.4 hypothetical protein compare
PS417_16885 -0.9 -1.7 hypothetical protein compare
PS417_12615 -0.9 -1.7 hypothetical protein compare
PS417_10390 -0.9 -1.9 RNA polymerase subunit sigma24 compare
PS417_00175 -0.9 -0.9 CigR compare
PS417_23910 -0.9 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_04475 -0.9 -1.9 hypothetical protein compare
PS417_28140 -0.9 -1.5 asparaginase compare
PS417_26890 -0.9 -2.2 dihydroxy-acid dehydratase compare
PS417_05560 -0.8 -1.3 ABC transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments