Experiment set19IT039 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -4.9 -1.3 formyltetrahydrofolate deformylase compare
PS417_25710 -4.5 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_01915 -4.2 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06375 -4.1 -1.1 deoxycytidine triphosphate deaminase compare
PS417_20985 -4.1 -2.7 porin compare
PS417_01580 -4.1 -1.5 imidazole glycerol phosphate synthase compare
PS417_00370 -3.8 -1.5 hypothetical protein compare
PS417_27865 -3.7 -4.3 LysR family transcriptional regulator compare
PS417_01605 -3.7 -2.0 phosphoglycerate mutase compare
PS417_22450 -3.6 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_27585 -3.2 -2.9 diaminopimelate epimerase compare
PS417_08135 -3.2 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08155 -3.0 -1.8 integration host factor subunit beta compare
PS417_27800 -3.0 -2.9 exodeoxyribonuclease III compare
PS417_26530 -3.0 -1.4 hypothetical protein compare
PS417_23770 -2.9 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_18310 -2.9 -1.6 hypothetical protein compare
PS417_08125 -2.8 -0.8 prephenate dehydratase compare
PS417_04650 -2.8 -1.0 D-alanine--D-alanine ligase compare
PS417_23545 -2.8 -2.7 gamma-glutamyl kinase compare
PS417_06680 -2.8 -6.3 nuclease PIN compare
PS417_02415 -2.7 -3.6 phosphoserine phosphatase compare
PS417_03560 -2.7 -1.6 GTP-binding protein compare
PS417_04380 -2.7 -1.5 ABC transporter permease compare
PS417_23810 -2.5 -10.3 acetolactate synthase 3 catalytic subunit compare
PS417_27195 -2.5 -1.7 N-acetylglutamate synthase compare
PS417_24745 -2.4 -3.5 gamma-glutamyl phosphate reductase compare
PS417_02975 -2.4 -3.6 3-dehydroquinate dehydratase compare
PS417_16555 -2.2 -2.1 cupin compare
PS417_18055 -2.1 -1.8 general secretion pathway protein GspK compare
PS417_02280 -2.1 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_21430 -2.1 -2.0 3-oxoacyl-ACP synthase compare
PS417_00180 -2.0 -2.7 tryptophan synthase subunit alpha compare
PS417_00185 -2.0 -2.9 tryptophan synthase subunit beta compare
PS417_27040 -1.9 -2.9 3-phosphoglycerate dehydrogenase compare
PS417_18560 -1.8 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_07560 -1.8 -1.9 universal stress protein UspA compare
PS417_23805 -1.7 -3.0 acetolactate synthase 3 regulatory subunit compare
PS417_14655 -1.7 -1.2 lysine transporter LysE compare
PS417_23380 -1.7 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_14940 -1.7 -1.7 LysR family transcriptional regulator compare
PS417_27245 -1.7 -2.3 aminotransferase DegT compare
PS417_15090 -1.7 -1.9 hypothetical protein compare
PS417_19675 -1.6 -4.1 chemotaxis protein CheY compare
PS417_28145 -1.6 -2.5 AraC family transcriptional regulator compare
PS417_01855 -1.6 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_23775 -1.6 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_21630 -1.6 -2.2 magnesium transporter compare
PS417_25720 -1.6 -4.6 anthranilate synthase component II compare
PS417_28070 -1.6 -7.3 phosphate ABC transporter ATP-binding protein compare
PS417_17610 -1.6 -1.7 AsnC family transcriptional regulator compare
PS417_22520 -1.6 -1.5 histidine kinase compare
PS417_02765 -1.6 -1.6 phosphate starvation-inducible protein PsiF compare
PS417_02575 -1.5 -2.4 membrane protein compare
PS417_27640 -1.5 -1.2 TetR family transcriptional regulator compare
PS417_15915 -1.5 -1.2 hypothetical protein compare
PS417_25725 -1.5 -8.0 anthranilate synthase component I compare
PS417_24620 -1.5 -1.4 hypothetical protein compare
PS417_21575 -1.5 -4.4 chemotaxis protein compare
PS417_19650 -1.5 -3.6 chemotaxis protein CheW compare
PS417_08230 -1.5 -1.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19850 -1.5 -5.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23105 -1.4 -1.4 hypothetical protein compare
PS417_06620 -1.4 -2.0 hypothetical protein compare
PS417_01290 -1.4 -1.5 ADP-ribose diphosphatase compare
PS417_27425 -1.4 -5.5 exopolyphosphatase compare
PS417_20160 -1.4 -3.7 cysteine synthase compare
PS417_09725 -1.4 -5.0 transporter compare
PS417_23370 -1.4 -3.3 protoheme IX farnesyltransferase compare
PS417_02555 -1.4 -8.1 exoribonuclease R compare
PS417_18595 -1.4 -2.5 3-isopropylmalate dehydratase compare
PS417_08130 -1.4 -2.1 aspartate aminotransferase compare
PS417_24500 -1.4 -2.7 DEAD/DEAH box helicase compare
PS417_09245 -1.3 -1.1 recombinase RdgC compare
PS417_04420 -1.3 -5.1 histidinol dehydrogenase compare
PS417_19800 -1.3 -2.8 flagellar motor switch protein FliG compare
PS417_21480 -1.3 -1.2 23S rRNA pseudouridylate synthase compare
PS417_06370 -1.3 -1.3 cold-shock protein compare
PS417_15135 -1.3 -1.5 hypothetical protein compare
PS417_01715 -1.3 -1.3 hypothetical protein compare
PS417_28080 -1.3 -7.2 phosphate ABC transporter permease compare
PS417_19690 -1.3 -3.3 histidine kinase compare
PS417_22445 -1.3 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_02510 -1.3 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02485 -1.3 -2.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01575 -1.3 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00475 -1.3 -2.6 membrane protein compare
PS417_14805 -1.3 -1.4 AraC family transcriptional regulator compare
PS417_19955 -1.2 -1.7 hypothetical protein compare
PS417_01565 -1.2 -3.8 imidazole glycerol phosphate synthase compare
PS417_20880 -1.2 -1.4 GntR family transcriptional regulator compare
PS417_00045 -1.2 -1.7 glycerol acyltransferase compare
PS417_21850 -1.2 -1.1 LysR family transcriptional regulator compare
PS417_26985 -1.2 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07640 -1.2 -1.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_12910 -1.2 -1.7 alanine racemase compare
PS417_06600 -1.2 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_12270 -1.2 -2.7 pyruvate dehydrogenase compare
PS417_16000 -1.2 -1.4 chemotaxis protein CheY compare
PS417_24155 -1.2 -1.7 ATP-binding protein compare
PS417_19860 -1.2 -7.5 flagellar hook protein FlgL compare
PS417_10810 -1.1 -1.5 hypothetical protein compare
PS417_24235 -1.1 -2.1 hypothetical protein compare
PS417_05475 -1.1 -2.0 arginase compare
PS417_03525 -1.1 -1.3 hypothetical protein compare
PS417_09235 -1.1 -0.9 molecular chaperone compare
PS417_06205 -1.1 -4.6 methionine aminopeptidase compare
PS417_24705 -1.1 -2.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_19655 -1.1 -3.1 chemotaxis protein CheW compare
PS417_21355 -1.1 -1.2 hypothetical protein compare
PS417_22085 -1.1 -2.2 aldehyde dehydrogenase compare
PS417_18530 -1.1 -3.8 O-succinylhomoserine sulfhydrylase compare
PS417_04915 -1.1 -1.5 glutamine ABC transporter ATP-binding protein compare
PS417_13185 -1.1 -1.8 RND transporter compare
PS417_08860 -1.1 -2.8 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_27815 -1.1 -1.0 hypothetical protein compare
PS417_12310 -1.1 -3.5 methionine synthase compare
PS417_23800 -1.0 -5.1 ketol-acid reductoisomerase compare
PS417_19660 -1.0 -4.1 cobalamin biosynthesis protein CobQ compare
PS417_15110 -1.0 -3.9 protein BatD compare
PS417_04595 -1.0 -1.7 cell division protein MraZ compare
PS417_15105 -1.0 -3.5 membrane protein compare
PS417_05535 -1.0 -0.8 Fis family transcriptional regulator compare
PS417_03385 -1.0 -1.1 flavin reductase compare
PS417_05635 -1.0 -3.4 membrane protein compare
PS417_22800 -1.0 -3.2 heme iron utilization protein compare
PS417_19840 -1.0 -4.9 flagellar cap protein FliD compare
PS417_15510 -1.0 -1.3 hypothetical protein compare
PS417_10390 -1.0 -1.7 RNA polymerase subunit sigma24 compare
PS417_02000 -1.0 -4.7 glutamate synthase compare
PS417_26745 -1.0 -3.0 methionine biosynthesis protein MetW compare
PS417_21210 -1.0 -2.4 amidotransferase compare
PS417_14835 -1.0 -1.6 amidase compare
PS417_19765 -1.0 -5.1 flagellar hook-length control protein compare
PS417_07710 -1.0 -3.1 membrane protein compare
PS417_17155 -1.0 -2.1 cytochrome B561 compare
PS417_04415 -1.0 -3.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01640 -1.0 -2.7 histidine kinase compare
PS417_12805 -1.0 -5.0 glycogen branching protein compare
PS417_27520 -1.0 -1.3 uroporphyrin-III methyltransferase compare
PS417_19865 -1.0 -6.5 flagellar hook protein FlgK compare
PS417_24460 -1.0 -1.1 hypothetical protein compare
PS417_17330 -1.0 -3.2 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_19880 -1.0 -3.7 flagellar basal body L-ring protein compare
PS417_15400 -1.0 -1.1 hypothetical protein compare
PS417_25985 -1.0 -1.4 dethiobiotin synthetase compare
PS417_23110 -1.0 -3.9 2-isopropylmalate synthase compare
PS417_08540 -1.0 -1.6 RNA helicase compare
PS417_16990 -0.9 -4.1 acyl-CoA dehydrogenase compare
PS417_15975 -0.9 -0.9 glutamate carboxypeptidase compare
PS417_03100 -0.9 -0.8 pilus assembly protein compare
PS417_02805 -0.9 -0.9 urease subunit gamma compare
PS417_06200 -0.9 -3.3 protein-PII uridylyltransferase compare
PS417_24885 -0.9 -1.9 transcriptional regulator compare
PS417_13510 -0.9 -0.7 polyketide cyclase compare
PS417_27910 -0.9 -2.5 PppA compare
PS417_26365 -0.9 -1.7 EmrB/QacA subfamily drug resistance transporter compare
PS417_11055 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_25700 -0.9 -2.0 cyclic AMP receptor protein compare
PS417_18105 -0.9 -0.9 iron-dicitrate transporter substrate-binding subunit compare
PS417_15085 -0.9 -2.3 ATPase AAA compare
PS417_13180 -0.9 -1.5 AraC family transcriptional regulator compare
PS417_09915 -0.9 -1.0 hypothetical protein compare
PS417_26890 -0.9 -3.1 dihydroxy-acid dehydratase compare
PS417_07945 -0.9 -1.5 hypothetical protein compare
PS417_27715 -0.9 -1.0 Fe-S oxidoreductase compare
PS417_14590 -0.9 -1.0 LysR family transcriptional regulator compare
PS417_21565 -0.9 -2.2 flagellar basal body rod protein FlgC compare
PS417_27870 -0.9 -1.0 ATP-dependent DNA helicase RecG compare
PS417_05860 -0.9 -1.5 hypothetical protein compare
PS417_21495 -0.9 -2.4 lipoprotein compare
PS417_20115 -0.9 -2.2 hypothetical protein compare
PS417_16195 -0.9 -0.8 AraC family transcriptional regulator compare
PS417_07870 -0.9 -1.0 hypothetical protein compare
PS417_17505 -0.9 -1.8 LuxR family transcriptional regulator compare
PS417_07950 -0.9 -1.8 MFS transporter compare
PS417_00825 -0.9 -1.3 recombinase RecF compare
PS417_21585 -0.9 -5.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_23375 -0.9 -0.9 cytochrome C oxidase compare
PS417_16005 -0.9 -1.6 ATPase compare
PS417_08685 -0.9 -1.1 flagellar hook-length control protein FliK compare
PS417_27875 -0.9 -5.5 histidine kinase compare
PS417_10725 -0.9 -3.2 excinuclease ABC subunit C compare
PS417_28020 -0.9 -1.9 chorismate--pyruvate lyase compare
PS417_22895 -0.8 -2.6 tyrosine recombinase XerD compare
PS417_18585 -0.8 -2.6 3-isopropylmalate dehydrogenase compare
PS417_04270 -0.8 -3.3 ribonuclease G compare
PS417_23510 -0.8 -1.1 HopJ type III effector protein compare
PS417_06165 -0.8 -1.5 thiamine biosynthesis protein ThiF compare
PS417_17000 -0.8 -1.8 MerR family transcriptional regulator compare
PS417_07195 -0.8 -1.7 hypothetical protein compare
PS417_23385 -0.8 -3.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_01710 -0.8 -2.8 histidine utilization repressor compare
PS417_11300 -0.8 -1.5 general secretion pathway protein GspE compare
PS417_19870 -0.8 -2.1 flagellar rod assembly protein FlgJ compare
PS417_11400 -0.8 -0.6 phosphoglycerate mutase compare
PS417_00220 -0.8 -1.2 hypothetical protein compare
PS417_04410 -0.8 -1.4 hypothetical protein compare
PS417_19935 -0.8 -2.4 hypothetical protein compare
PS417_10405 -0.8 -0.7 filamentous hemagglutinin compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments