Experiment set19IT039 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most detrimental genes:

  gene name fitness t score description  
PS417_08185 +1.9 6.9 glycosyl transferase compare
PS417_09210 +1.7 2.3 TetR family transcriptional regulator compare
PS417_00845 +1.2 2.9 transcriptional regulator compare
PS417_04875 +1.2 1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_18205 +1.2 2.0 aldehyde dehydrogenase compare
PS417_23315 +1.1 1.3 transcriptional regulator compare
PS417_26900 +1.1 1.3 L-cystine transporter tcyP compare
PS417_21845 +1.0 2.0 membrane protein compare
PS417_22705 +1.0 2.3 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_13455 +1.0 2.9 alkaline proteinase inhibitor compare
PS417_19620 +1.0 1.9 hypothetical protein compare
PS417_01115 +1.0 0.9 serine acetyltransferase compare
PS417_19600 +0.9 1.4 exonuclease compare
PS417_13205 +0.9 1.6 isochorismate-pyruvate lyase compare
PS417_03325 +0.9 2.9 acid phosphatase compare
PS417_08435 +0.9 2.1 pilus assembly protein PilZ compare
PS417_06145 +0.9 1.1 hypothetical protein compare
PS417_13660 +0.8 1.8 AsnC family transcriptional regulator compare
PS417_15705 +0.8 1.5 nitrate reductase compare
PS417_06730 +0.8 0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_18915 +0.8 2.6 hypothetical protein compare
PS417_11770 +0.8 1.6 pyruvate dehydrogenase compare
PS417_16815 +0.8 1.6 acyl-CoA dehydrogenase compare
PS417_05365 +0.8 1.0 FAD-binding protein compare
PS417_22060 +0.8 1.2 hypothetical protein compare
PS417_05975 +0.8 0.9 chemotaxis protein CheW compare
PS417_07540 +0.8 2.4 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_03080 +0.8 1.3 hypothetical protein compare
PS417_15285 +0.8 1.0 type VI secretion protein compare
PS417_21710 +0.8 2.2 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_05445 +0.8 1.2 DNA mismatch repair protein MutT compare
PS417_10655 +0.8 2.7 LuxR family transcriptional regulator compare
PS417_24430 +0.8 1.4 3-dehydroquinate dehydratase compare
PS417_15480 +0.8 1.0 ABC transporter substrate-binding protein compare
PS417_06490 +0.8 2.2 hypothetical protein compare
PS417_08590 +0.8 1.6 hypothetical protein compare
PS417_14200 +0.8 1.2 hypothetical protein compare
PS417_12990 +0.8 2.2 nucleoside hydrolase compare
PS417_04305 +0.7 0.7 aspartate ammonia-lyase compare
PS417_18860 +0.7 2.4 transcriptional regulator compare
PS417_16870 +0.7 2.2 short-chain dehydrogenase compare
PS417_10910 +0.7 2.2 FAD-dependent oxidoreductase compare
PS417_25225 +0.7 1.4 MFS transporter compare
PS417_11555 +0.7 2.1 (2Fe-2S)-binding protein compare
PS417_02175 +0.7 2.0 transcriptional regulator compare
PS417_06685 +0.7 0.8 beta-ketoadipyl CoA thiolase compare
PS417_19065 +0.7 0.9 monooxygenase compare
PS417_07035 +0.7 3.4 uracil-DNA glycosylase compare
PS417_06635 +0.7 1.1 ferredoxin compare
PS417_18160 +0.7 1.3 YeeE/YedE compare
PS417_26120 +0.7 1.9 hypothetical protein compare
PS417_10995 +0.7 2.1 GntR family transcriptional regulator compare
PS417_11615 +0.7 0.9 urea ABC transporter ATP-binding protein compare
PS417_17380 +0.7 2.0 membrane protein compare
PS417_08245 +0.7 0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_09460 +0.7 1.3 alkanesulfonate monooxygenase compare
PS417_12245 +0.7 1.1 GNAT family acetyltransferase compare
PS417_12660 +0.7 0.6 hypothetical protein compare
PS417_12390 +0.7 1.0 hypothetical protein compare
PS417_17645 +0.7 1.4 RND transporter compare
PS417_13885 +0.7 1.1 chemotaxis protein CheY compare
PS417_07410 +0.7 1.4 hypothetical protein compare
PS417_11865 +0.7 2.0 xylose isomerase compare
PS417_07820 +0.7 1.2 transposase compare
PS417_25180 +0.7 2.1 hypothetical protein compare
PS417_20840 +0.6 3.5 hypothetical protein compare
PS417_14810 +0.6 2.5 Fosmidomycin resistance protein compare
PS417_17780 +0.6 1.0 Ais protein compare
PS417_27230 +0.6 2.6 membrane protein implicated in regulation of membrane protease activity compare
PS417_11820 +0.6 1.3 histidine kinase compare
PS417_18710 +0.6 3.3 hypothetical protein compare
PS417_12455 +0.6 1.2 hydrolase compare
PS417_20635 +0.6 0.7 ABC transporter ATP-binding protein compare
PS417_26245 +0.6 2.1 hypothetical protein compare
PS417_01030 +0.6 1.1 glutamine ABC transporter substrate-binding protein compare
PS417_03940 +0.6 2.0 membrane protein compare
PS417_04210 +0.6 2.8 Galactarate dehydratase (EC 4.2.1.42) (from data) compare
PS417_16720 +0.6 0.9 membrane protein compare
PS417_15065 +0.6 1.7 GntR family transcriptional regulator compare
PS417_14780 +0.6 1.7 GNAT family acetyltraansferase compare
PS417_15875 +0.6 1.3 LuxR family transcriptional regulator compare
PS417_05780 +0.6 2.6 hypothetical protein compare
PS417_16850 +0.6 2.1 cation:proton antiporter compare
PS417_09630 +0.6 2.2 glycosyl transferase compare
PS417_23015 +0.6 2.0 NGG1p interacting factor 3 protein, NIF3 compare
PS417_26840 +0.6 2.7 TetR family transcriptional regulator compare
PS417_18755 +0.6 1.4 CrtK compare
PS417_21535 +0.6 1.7 chemotaxis protein CheY compare
PS417_19195 +0.6 1.7 hypothetical protein compare
PS417_05525 +0.6 1.4 Fis family transcriptional regulator compare
PS417_12595 +0.6 1.1 transcriptional regulator compare
PS417_17070 +0.6 1.1 RNA polymerase subunit sigma-24 compare
PS417_24675 +0.6 1.3 lipoyl synthase compare
PS417_02670 +0.6 1.5 ABC transporter compare
PS417_27785 +0.6 2.0 phosphoglucomutase compare
PS417_00975 +0.6 1.1 hypothetical protein compare
PS417_21070 +0.6 1.0 aconitate hydratase compare
PS417_18150 +0.6 1.4 chemotaxis protein CheY compare
PS417_24135 +0.6 0.7 hypothetical protein compare
PS417_05790 +0.6 2.4 hypothetical protein compare
PS417_17105 +0.6 1.8 spore coat protein compare
PS417_17945 +0.6 0.6 hypothetical protein compare
PS417_09545 +0.6 0.7 aldehyde-activating protein compare
PS417_12725 +0.6 2.3 AraC family transcriptional regulator compare
PS417_10220 +0.6 1.2 hypothetical protein compare
PS417_27180 +0.6 1.6 peroxidase compare
PS417_22875 +0.6 1.1 hypothetical protein compare
PS417_14985 +0.6 1.4 Fe-S protein compare
PS417_17120 +0.6 1.3 protein kinase compare
PS417_09695 +0.6 1.1 hydrolase compare
PS417_27225 +0.6 1.7 protease compare
PS417_20725 +0.6 0.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_22715 +0.5 1.2 heme oxygenase compare
PS417_11570 +0.5 1.7 ABC transporter permease compare
PS417_08320 +0.5 1.1 metal-chelation protein CHAD compare
PS417_20140 +0.5 1.0 nucleoprotein/polynucleotide-associated enzyme compare
PS417_27950 +0.5 1.6 hypothetical protein compare
PS417_01080 +0.5 1.2 acyl-CoA dehydrogenase compare
PS417_26805 +0.5 0.7 cell division protein FtsE compare
PS417_18350 +0.5 1.5 hypothetical protein compare
PS417_06510 +0.5 2.1 ATP-dependent DNA helicase DinG compare
PS417_14240 +0.5 1.4 isochorismatase compare
PS417_17440 +0.5 1.3 beta-lactamase compare
PS417_09615 +0.5 2.1 glycosyl transferase family 1 compare
PS417_23300 +0.5 1.9 hypothetical protein compare
PS417_10370 +0.5 1.2 ATPase compare
PS417_26725 +0.5 2.3 hypothetical protein compare
PS417_01400 +0.5 1.6 hypothetical protein compare
PS417_26290 +0.5 1.8 4-hydroxybenzoyl-CoA thioesterase compare
PS417_10070 +0.5 2.8 hypothetical protein compare
PS417_17480 +0.5 1.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_05785 +0.5 1.9 tail protein compare
PS417_12055 +0.5 1.6 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_16845 +0.5 1.6 monovalent cation/H+ antiporter subunit E compare
PS417_12930 +0.5 1.0 LpxA family transferase compare
PS417_24355 +0.5 1.3 MFS transporter compare
PS417_05380 +0.5 2.2 hypothetical protein compare
PS417_26330 +0.5 2.9 beta-aspartyl peptidase compare
PS417_24775 +0.5 1.0 dehydratase compare
PS417_26585 +0.5 1.3 malonate carrier protein compare
PS417_00940 +0.5 1.7 sulfate ABC transporter permease compare
PS417_17405 +0.5 1.3 AraC family transcriptional regulator compare
PS417_00510 +0.5 0.6 membrane protein compare
PS417_18370 +0.5 0.9 hypothetical protein compare
PS417_11360 +0.5 1.2 energy transducer TonB compare
PS417_18490 +0.5 2.0 hypothetical protein compare
PS417_14255 +0.5 1.8 phosphate import ATP-binding protein PstB compare
PS417_08500 +0.5 1.6 LysR family transcriptional regulator compare
PS417_22385 +0.5 2.9 quinolinate synthase A compare
PS417_23490 +0.5 0.9 dihydrofolate reductase compare
PS417_14635 +0.5 2.5 GDSL family lipase compare
PS417_22550 +0.5 1.6 ATP-binding protein compare
PS417_23680 +0.5 1.1 AraC family transcriptional regulator compare
PS417_15390 +0.5 1.5 hypothetical protein compare
PS417_23205 +0.5 0.7 transcriptional regulator compare
PS417_25905 +0.5 0.9 AsnC family transcriptional regulator compare
PS417_10425 +0.5 1.0 hypothetical protein compare
PS417_24840 +0.5 0.7 hypothetical protein compare
PS417_04220 +0.5 0.7 4-carboxymuconolactone decarboxylase compare
PS417_14355 +0.5 1.7 sugar dehydrogenase compare
PS417_18750 +0.5 2.0 esterase compare
PS417_19045 +0.5 1.7 amino acid:proton symporter compare
PS417_09610 +0.5 1.9 beta-xylosidase compare
PS417_24615 +0.5 0.5 hypothetical protein compare
PS417_05560 +0.5 1.3 ABC transporter compare
PS417_03155 +0.5 2.5 transcriptional regulator compare
PS417_06485 +0.5 2.2 hypothetical protein compare
PS417_20340 +0.5 0.8 hypothetical protein compare
PS417_19945 +0.5 1.9 MarR family transcriptional regulator compare
PS417_01645 +0.5 0.8 cupin compare
PS417_03655 +0.5 1.3 short-chain dehydrogenase compare
PS417_09655 +0.5 1.5 RNA polymerase sigma factor compare
PS417_15665 +0.5 0.9 hypothetical protein compare
PS417_17705 +0.5 1.0 LacI family transcriptional regulator compare
PS417_21670 +0.5 1.4 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_21315 +0.5 2.0 hydroxyacid dehydrogenase compare
PS417_16680 +0.5 0.9 MFS transporter compare
PS417_20265 +0.5 1.3 transcriptional regulator compare
PS417_13050 +0.5 0.8 N-acetylglucosamine-6-sulfatase compare
PS417_15470 +0.5 1.5 saccharopine dehydrogenase compare
PS417_13160 +0.5 1.7 iron transporter compare
PS417_18940 +0.5 1.2 LysR family transcriptional regulator compare
PS417_08625 +0.5 2.0 membrane protein compare
PS417_18190 +0.4 1.3 IclR family transcriptional regulator compare
PS417_26115 +0.4 2.4 glutamine ABC transporter ATP-binding protein compare
PS417_16805 +0.4 1.9 5,10-methylene tetrahydromethanopterin reductase compare
PS417_12700 +0.4 1.4 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_18260 +0.4 1.6 TetR family transcriptional regulator compare
PS417_24990 +0.4 1.5 exotoxin compare
PS417_02750 +0.4 1.7 alpha/beta hydrolase compare
PS417_17795 +0.4 1.1 ABC transporter permease compare
PS417_11150 +0.4 2.1 porin compare
PS417_17320 +0.4 1.6 phenylhydantoinase compare
PS417_21730 +0.4 1.4 peptidase M14 compare
PS417_13545 +0.4 1.0 arginine aminotransferase compare
PS417_00705 +0.4 0.7 MarR family transcriptional regulator compare
PS417_10890 +0.4 1.7 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_13590 +0.4 1.2 histidine kinase compare
PS417_06025 +0.4 1.1 alpha/beta hydrolase compare
PS417_06350 +0.4 2.3 stationary phase survival protein SurE compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments