Experiment set19IT036 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_34; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -6.0 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_3511 -5.7 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.3 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_0083 -5.2 -7.1 tryptophan synthase beta chain compare
PP_5155 -5.1 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0082 -4.8 -8.1 tryptophan synthase alpha chain compare
PP_0966 -4.6 -9.8 Histidinol dehydrogenase compare
PP_1088 -4.5 -14.2 Argininosuccinate synthase compare
PP_4680 -4.4 -15.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.4 -13.9 Ketol-acid reductoisomerase compare
PP_5346 -4.4 -9.7 pyruvate carboxylase subunit B compare
PP_5185 -4.4 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1079 -4.1 -5.5 Ornithine carbamoyltransferase compare
PP_1995 -4.1 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2402 -4.1 -2.8 putative Sensor histidine kinase compare
PP_4696 -4.0 -6.6 Nitrogen regulation protein NR(I) compare
PP_0967 -3.9 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -3.9 -8.0 Dihydroxy-acid dehydratase compare
PP_4679 -3.8 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -3.7 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -3.7 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1988 -3.7 -7.3 3-isopropylmalate dehydrogenase compare
PP_5098 -3.7 -7.7 methionine biosynthesis protein MetW compare
PP_0421 -3.5 -7.6 Anthranilate phosphoribosyltransferase compare
PP_0184 -3.5 -8.4 Argininosuccinate lyase compare
PP_0420 -3.4 -9.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0787 -3.4 -2.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4804 -3.4 -4.0 RlpA-like lipoprotein compare
PP_5097 -3.3 -10.9 homoserine O-acetyltransferase compare
PP_5350 -3.2 -4.5 Transcriptional regulator, RpiR family compare
PP_0417 -3.1 -12.4 Anthranilate synthase component 1 compare
PP_2371 -3.1 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0290 -3.0 -5.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5347 -3.0 -9.3 pyruvate carboxylase subunit A compare
PP_4909 -3.0 -6.5 phosphoserine phosphatase compare
PP_0289 -3.0 -5.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5348 -2.9 -6.6 Transcriptional regulator, LysR family compare
PP_2001 -2.8 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_5289 -2.8 -2.8 Acetylglutamate kinase compare
PP_4994 -2.8 -4.8 conserved protein of unknown function compare
PP_0422 -2.8 -4.8 Indole-3-glycerol phosphate synthase compare
PP_4902 -2.7 -3.2 Oligoribonuclease compare
PP_5303 -2.6 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2328 -2.6 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_0888 -2.5 -3.3 Photosynthetic apparatus regulatory protein RegA compare
PP_1025 -2.4 -7.8 2-isopropylmalate synthase compare
PP_5027 -2.4 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1898 -2.4 -4.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0566 -2.3 -1.6 translation-related factor compare
PP_4701 -2.3 -1.4 glucose-6-phosphate isomerase compare
PP_1734 -2.3 -5.3 Probable septum site-determining protein MinC compare
PP_5015 -2.3 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1912 -2.3 -5.9 Phosphate acyltransferase compare
PP_2168 -2.3 -7.5 Transaldolase compare
PP_t29 -2.2 -2.6 tRNA-Ala compare
PP_2370 -2.1 -3.4 conserved protein of unknown function compare
PP_3999 -2.1 -6.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2378 -2.1 -3.4 Fe/S biogenesis protein NfuA compare
PP_4874 -2.1 -1.9 50S ribosomal protein L9 compare
PP_1231 -2.1 -4.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2327 -2.1 -5.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1022 -2.0 -5.6 glucose 6-phosphate-1-dehydrogenase compare
PP_0366 -2.0 -6.9 dethiobiotin synthetase compare
PP_4785 -2.0 -8.5 conserved exported protein of unknown function compare
PP_4890 -1.9 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5217 -1.9 -7.1 Polyphosphate kinase compare
PP_0630 -1.8 -1.4 DNA gyrase inhibitor YacG compare
PP_3808 -1.8 -2.3 Antibiotic synthesis protein MbtH compare
PP_0291 -1.8 -2.2 conserved protein of unknown function compare
PP_3417 -1.8 -4.3 D-gluconate transporter compare
PP_1664 -1.7 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4964 -1.7 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_5230 -1.7 -2.6 Tyrosine recombinase XerC compare
PP_0152 -1.7 -2.2 conserved exported protein of unknown function compare
PP_3164 -1.6 -3.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5093 -1.6 -1.3 twitching motility protein compare
PP_0363 -1.6 -8.1 8-amino-7-oxononanoate synthase compare
PP_0547 -1.6 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2581 -1.5 -2.0 conserved protein of unknown function compare
PP_0362 -1.5 -6.2 Biotin synthase compare
PP_5241 -1.5 -1.9 DNA-binding response regulator, LuxR family compare
PP_4213 -1.5 -1.9 putative dipeptidase compare
PP_4254 -1.5 -2.4 conserved protein of unknown function compare
PP_5090 -1.5 -2.1 putative cell division protein compare
PP_1632 -1.5 -1.8 conserved protein of unknown function compare
PP_1656 -1.5 -5.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_5248 -1.5 -1.5 putative hydrolase compare
PP_4546 -1.4 -3.8 ATP-dependent helicase HrpA compare
PP_4122 -1.4 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1218 -1.4 -2.2 putative acyl-CoA thioesterase compare
PP_4984 -1.4 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1110 -1.4 -3.4 serine acetyltransferase compare
PP_1733 -1.3 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0364 -1.3 -5.4 pimeloyl-[acp] methyl ester esterase compare
PP_2526 -1.3 -2.7 conserved membrane protein of unknown function compare
PP_4504 -1.3 -1.6 conserved exported protein of unknown function compare
PP_4560 -1.3 -2.3 putative Ribonuclease BN compare
PP_1994 -1.3 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_2880 -1.3 -1.3 Transcriptional regulator, TetR family compare
PP_5058 -1.3 -3.2 Carboxy-terminal-processing protease compare
PP_2499 -1.2 -1.7 conserved protein of unknown function compare
PP_3105 -1.2 -1.7 conserved membrane protein of unknown function compare
PP_5508 -1.2 -1.3 conserved protein of unknown function compare
PP_4693 -1.2 -2.7 RNA polymerase-binding transcription factor DksA compare
PP_0065 -1.2 -2.5 NAD-binding component of TrK potassium transporter compare
PP_0801 -1.2 -1.1 conserved exported protein of unknown function compare
PP_4738 -1.2 -3.0 conserved exported protein of unknown function compare
PP_5203 -1.1 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_2322 -1.1 -3.0 Major outer membrane lipoprotein compare
PP_0962 -1.1 -2.0 toluene-tolerance protein compare
PP_5639 -1.1 -4.5 conserved exported protein of unknown function compare
PP_5007 -1.1 -2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0365 -1.1 -6.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0191 -1.1 -1.8 Transcriptional regulatory protein AlgQ compare
PP_4988 -1.1 -4.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1362 -1.1 -2.0 pyruvate kinase II compare
PP_2145 -1.1 -1.2 beta-N-acetylglucosaminidase compare
PP_4722 -1.1 -3.3 Transcription elongation factor GreA compare
PP_2163 -1.1 -4.0 VacJ lipoprotein compare
PP_5017 -1.1 -1.0 Sec-independent protein translocase protein TatB compare
PP_2299 -1.1 -2.6 Trigger factor compare
PP_4642 -1.0 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_1979 -1.0 -2.7 putative Hydrolase compare
PP_2939 -1.0 -3.4 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_0122 -1.0 -2.0 conserved exported protein of unknown function compare
PP_1783 -1.0 -1.6 dTDP-glucose pyrophosphorylase compare
PP_1353 -1.0 -1.7 conserved membrane protein of unknown function compare
PP_3806 -1.0 -2.0 Hydrolase, isochorismatase family compare
PP_4424 -1.0 -1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5104 -1.0 -4.0 thiazole synthase compare
PP_2320 -1.0 -6.1 conserved exported protein of unknown function compare
PP_4977 -1.0 -4.6 5,10-methylenetetrahydrofolate reductase compare
PP_5507 -1.0 -2.8 protein of unknown function compare
PP_1426 -1.0 -5.4 L-aspartate oxidase compare
PP_2622 -1.0 -1.5 conserved protein of unknown function compare
PP_1764 -1.0 -1.8 Phosphoglycolate phosphatase 2 compare
PP_1568 -1.0 -1.1 conserved protein of unknown function compare
PP_2883 -1.0 -1.4 conserved protein of unknown function compare
PP_5267 -1.0 -1.5 putative cytochrome c5 compare
PP_4238 -1.0 -2.1 conserved protein of unknown function compare
PP_1770 -0.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2846 -0.9 -1.8 urease accessory protein compare
PP_5028 -0.9 -2.5 proline iminopeptidase compare
PP_0839 -0.9 -1.7 tRNA Cm32/Um32 methyltransferase compare
PP_4684 -0.9 -3.4 conserved protein of unknown function with kinase-like domain compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_4936 -0.9 -4.8 O-antigen polymerase compare
PP_2171 -0.9 -1.9 Transporter, LysE family compare
PP_1328 -0.9 -1.7 Protein MraZ compare
PP_3392 -0.9 -1.4 conserved protein of unknown function compare
PP_2070 -0.9 -1.1 Transcriptional regulator, AraC family compare
PP_1322 -0.9 -1.3 putative Lipoprotein compare
PP_1629 -0.9 -3.0 Protein RecA compare
PP_5201 -0.9 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_4126 -0.9 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_1716 -0.9 -1.5 Transcriptional regulator, Cro/CI family compare
PP_3480 -0.9 -2.6 conserved protein of unknown function compare
PP_4695 -0.9 -5.1 Sensory box histidine kinase compare
PP_1589 -0.9 -4.0 uridylyltransferase compare
PP_2302 -0.9 -2.4 DNA-binding, ATP-dependent protease compare
PP_3971 -0.9 -0.5 conserved protein of unknown function compare
PP_0989 -0.9 -2.9 glycine cleavage system H protein 1 compare
PP_0960 -0.9 -2.4 phospholipid ABC transporter binding protein compare
PP_0833 -0.9 -0.8 queuine tRNA-ribosyltransferase compare
PP_1655 -0.8 -1.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5075 -0.8 -4.8 glutamate synthase (NADPH) beta subunit compare
PP_4199 -0.8 -0.9 putative Lipoprotein compare
PP_5552 -0.8 -1.2 conserved protein of unknown function compare
PP_5SB -0.8 -1.8 5S ribosomal RNA compare
PP_2136 -0.8 -2.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1649 -0.8 -1.6 D-lactate dehydrogenase compare
PP_4739 -0.8 -1.5 conserved protein of unknown function compare
PP_4265 -0.8 -0.5 DNA-binding transcriptional dual regulator compare
PP_2375 -0.8 -5.1 cobalamin-dependent methionine synthase compare
PP_0789 -0.8 -2.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4724 -0.8 -0.5 Carbamoyl-phosphate synthase small chain compare
PP_3525 -0.8 -3.6 conserved exported protein of unknown function compare
PP_4178 -0.8 -2.2 Dienelactone hydrolase family protein compare
PP_2107 -0.8 -1.3 conserved protein of unknown function compare
PP_0138 -0.8 -4.4 conserved membrane protein of unknown function compare
PP_3637 -0.8 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4913 -0.8 -2.0 conserved protein of unknown function compare
PP_1654 -0.8 -1.5 cysteine synthase B compare
PP_3064 -0.8 -0.9 Phage tail protein compare
PP_5644 -0.8 -1.3 conserved membrane protein of unknown function compare
PP_3810 -0.8 -1.4 conserved protein of unknown function compare
PP_1672 -0.8 -2.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3378 -0.8 -1.3 putative 2-ketogluconokinase compare
PP_5216 -0.8 -1.1 exopolyphosphatase compare
PP_1355 -0.8 -3.7 Muropeptide permease AmpG compare
PP_1366 -0.8 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_3034 -0.7 -2.0 putative Regulator protein compare
PP_2207 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_2347 -0.7 -2.3 DNA-binding response regulator compare
PP_5227 -0.7 -2.5 diaminopimelate decarboxylase compare
PP_4943 -0.7 -1.3 putative Glycosyl transferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms