Experiment set19IT035 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most detrimental genes:

  gene name fitness t score description  
PS417_20690 +3.3 15.7 chemotaxis protein compare
PS417_25270 +2.3 7.1 NrdR family transcriptional regulator compare
PS417_15695 +2.1 6.5 molybdenum cofactor biosynthesis protein A compare
PS417_16370 +1.8 11.6 chemotaxis protein CheY compare
PS417_11865 +1.7 3.0 xylose isomerase compare
PS417_26900 +1.6 2.2 L-cystine transporter tcyP compare
PS417_10720 +1.6 5.8 chemotaxis protein CheY compare
PS417_05830 +1.4 2.1 hypothetical protein compare
PS417_14980 +1.4 1.9 universal stress protein UspA compare
PS417_02740 +1.4 2.5 LysR family transcriptional regulator compare
PS417_01115 +1.4 1.4 serine acetyltransferase compare
PS417_05235 +1.3 2.0 peptidase inhibitor I42 compare
PS417_21625 +1.3 1.8 DNA-binding protein compare
PS417_15710 +1.3 3.9 nitrate reductase compare
PS417_17755 +1.3 2.1 hypothetical protein compare
PS417_27180 +1.2 2.6 peroxidase compare
PS417_21600 +1.2 7.1 pilus assembly protein PilZ compare
PS417_18105 +1.2 1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_15955 +1.2 2.1 secretion protein HylD compare
PS417_18205 +1.2 2.3 aldehyde dehydrogenase compare
PS417_25155 +1.2 2.3 hypothetical protein compare
PS417_15705 +1.2 1.8 nitrate reductase compare
PS417_28340 +1.2 1.9 hypothetical protein compare
PS417_22570 +1.2 1.3 H-NS histone compare
PS417_08185 +1.2 2.8 glycosyl transferase compare
PS417_22375 +1.1 1.1 cold-shock protein compare
PS417_00455 +1.1 1.8 hypothetical protein compare
PS417_11375 +1.1 2.3 hypothetical protein compare
PS417_00590 +1.1 3.1 5S ribosomal RNA compare
PS417_10480 +1.1 1.3 glutathione S-transferase compare
PS417_06730 +1.1 1.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_04875 +1.1 1.8 molybdenum cofactor biosynthesis protein MoaE compare
PS417_15090 +1.1 0.7 hypothetical protein compare
PS417_23150 +1.1 2.8 Cro/Cl family transcriptional regulator compare
PS417_01945 +1.0 2.3 nuclease compare
PS417_08365 +1.0 1.3 hypothetical protein compare
PS417_01130 +1.0 2.0 L-glyceraldehyde 3-phosphate reductase compare
PS417_03930 +1.0 4.8 thymidine phosphorylase compare
PS417_04080 +1.0 1.2 peptide ABC transporter substrate-binding protein compare
PS417_05865 +1.0 1.8 hypothetical protein compare
PS417_15520 +1.0 1.8 hypothetical protein compare
PS417_15285 +1.0 1.2 type VI secretion protein compare
PS417_19285 +1.0 1.2 ankyrin compare
PS417_18140 +1.0 2.5 hypothetical protein compare
PS417_03100 +1.0 1.2 pilus assembly protein compare
PS417_21180 +0.9 2.6 short-chain dehydrogenase compare
PS417_06865 +0.9 2.0 transporter compare
PS417_01435 +0.9 1.3 hypothetical protein compare
PS417_04220 +0.9 1.3 4-carboxymuconolactone decarboxylase compare
PS417_08590 +0.9 0.8 hypothetical protein compare
PS417_12460 +0.9 2.8 hypothetical protein compare
PS417_13840 +0.9 3.3 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_00940 +0.9 1.9 sulfate ABC transporter permease compare
PS417_03325 +0.9 2.3 acid phosphatase compare
PS417_19335 +0.9 1.5 isochorismatase compare
PS417_22705 +0.9 1.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_15200 +0.9 2.1 protein activator of alkane oxidation PraB compare
PS417_15540 +0.9 1.3 NUDIX hydrolase compare
PS417_03380 +0.9 1.0 hypothetical protein compare
PS417_28265 +0.9 2.1 pyridoxamine kinase compare
PS417_12375 +0.9 1.6 serine/threonine protein phosphatase compare
PS417_15715 +0.8 2.8 nitrate reductase compare
PS417_20775 +0.8 2.5 coproporphyrinogen III oxidase compare
PS417_18020 +0.8 0.8 hypothetical protein compare
PS417_19505 +0.8 1.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_08230 +0.8 1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_13140 +0.8 1.3 oxidoreductase compare
PS417_05985 +0.8 2.8 chemotaxis protein CheY compare
PS417_14140 +0.8 1.9 membrane protein compare
PS417_16065 +0.8 1.9 3-phytase compare
PS417_15915 +0.8 1.1 hypothetical protein compare
PS417_04185 +0.8 1.6 hypothetical protein compare
PS417_23620 +0.8 3.0 epimerase compare
PS417_18070 +0.8 1.0 general secretion pathway protein GspH compare
PS417_08025 +0.8 1.1 acetylornithine aminotransferase compare
PS417_07700 +0.8 1.5 chromosome partitioning protein ParA compare
PS417_17305 +0.8 1.3 hypothetical protein compare
PS417_23715 +0.8 1.5 cupin compare
PS417_02885 +0.8 1.7 hypothetical protein compare
PS417_25825 +0.8 2.1 sulfurtransferase compare
PS417_15465 +0.8 1.6 carboxynorspermidine decarboxylase compare
PS417_15065 +0.8 1.7 GntR family transcriptional regulator compare
PS417_18630 +0.8 2.0 tRNA-dihydrouridine synthase C compare
PS417_07840 +0.8 1.5 hypothetical protein compare
PS417_17945 +0.8 0.8 hypothetical protein compare
PS417_08320 +0.8 1.8 metal-chelation protein CHAD compare
PS417_02995 +0.8 2.0 NUDIX hydrolase compare
PS417_05785 +0.7 2.5 tail protein compare
PS417_17345 +0.7 1.9 hypothetical protein compare
PS417_26990 +0.7 0.7 RNA pyrophosphohydrolase compare
PS417_21845 +0.7 1.9 membrane protein compare
PS417_03905 +0.7 2.2 fimbrial protein compare
PS417_15885 +0.7 1.4 GCN5 family acetyltransferase compare
PS417_26605 +0.7 0.7 malonate decarboxylase subunit beta compare
PS417_23610 +0.7 2.3 hypothetical protein compare
PS417_07380 +0.7 2.5 hypothetical protein compare
PS417_14710 +0.7 1.2 isochorismatase compare
PS417_26150 +0.7 2.3 acyltransferase compare
PS417_22380 +0.7 1.1 hypothetical protein compare
PS417_00510 +0.7 0.8 membrane protein compare
PS417_08435 +0.7 0.8 pilus assembly protein PilZ compare
PS417_14430 +0.7 2.0 AraC family transcriptional regulator compare
PS417_19625 +0.7 2.5 histidine kinase compare
PS417_03920 +0.7 1.5 dephospho-CoA kinase compare
PS417_12780 +0.7 1.9 (Fe-S)-binding protein compare
PS417_04475 +0.7 2.1 hypothetical protein compare
PS417_14410 +0.7 3.1 ABC transporter substrate-binding protein compare
PS417_14680 +0.7 1.5 LysR family transcriptional regulator compare
PS417_23665 +0.7 1.7 Muconolactone isomerase (EC 5.3.3.4) (from data) compare
PS417_06395 +0.7 1.7 amino acid transporter compare
PS417_09730 +0.7 1.5 adenylylsulfate kinase compare
PS417_05735 +0.7 1.2 tail fiber protein compare
PS417_11535 +0.7 1.3 nicotinate phosphoribosyltransferase compare
PS417_03970 +0.7 1.2 1-phosphofructokinase compare
PS417_21850 +0.7 0.9 LysR family transcriptional regulator compare
PS417_21840 +0.7 1.6 chemotaxis protein compare
PS417_17015 +0.7 1.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_11825 +0.7 1.2 transcriptional regulator compare
PS417_21090 +0.7 1.7 hypothetical protein compare
PS417_26240 +0.7 1.2 N-methylproline demethylase compare
PS417_15215 +0.7 1.0 protein activator of alkane oxidation PraA compare
PS417_17550 +0.7 2.5 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_06970 +0.7 1.1 LysR family transcriptional regulator compare
PS417_21135 +0.7 2.4 Asp/Glu/hydantoin racemase compare
PS417_03510 +0.7 2.3 type III secretion system negative regulatory protein RspV compare
PS417_05850 +0.7 2.5 LysR family transcriptional regulator compare
PS417_21760 +0.6 0.5 hypothetical protein compare
PS417_14540 +0.6 1.0 cytochrome C oxidase subunit III compare
PS417_28040 +0.6 2.4 histidine kinase compare
PS417_04275 +0.6 3.6 hypothetical protein compare
PS417_15535 +0.6 1.3 oxidoreductase compare
PS417_20715 +0.6 1.2 cytochrome Cbb3 compare
PS417_11900 +0.6 2.9 conjugal transfer protein TraR compare
PS417_18360 +0.6 1.0 hypothetical protein compare
PS417_24840 +0.6 0.8 hypothetical protein compare
PS417_26660 +0.6 1.6 protein PilI compare
PS417_27230 +0.6 3.1 membrane protein implicated in regulation of membrane protease activity compare
PS417_11310 +0.6 2.1 alkaline phosphatase compare
PS417_09665 +0.6 1.2 dimethylglycine dehydrogenase compare
PS417_27815 +0.6 0.9 hypothetical protein compare
PS417_14240 +0.6 1.2 isochorismatase compare
PS417_26930 +0.6 2.5 FAD-dependent oxidoreductase compare
PS417_19370 +0.6 1.9 citrate transporter compare
PS417_09460 +0.6 1.2 alkanesulfonate monooxygenase compare
PS417_12680 +0.6 3.1 hypothetical protein compare
PS417_09300 +0.6 1.5 peptidylprolyl isomerase compare
PS417_27405 +0.6 2.3 hypothetical protein compare
PS417_26265 +0.6 1.2 hypothetical protein compare
PS417_10710 +0.6 0.8 GNAT family acetyltransferase compare
PS417_27065 +0.6 1.9 hypothetical protein compare
PS417_26785 +0.6 1.8 membrane protein compare
PS417_11230 +0.6 1.9 hydroxyacid dehydrogenase compare
PS417_20725 +0.6 0.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_14315 +0.6 1.4 2,5-dioxovalerate dehydrogenase compare
PS417_12655 +0.6 2.8 methionine aminopeptidase compare
PS417_01030 +0.6 0.9 glutamine ABC transporter substrate-binding protein compare
PS417_25175 +0.6 1.3 hypothetical protein compare
PS417_08470 +0.6 2.2 hypothetical protein compare
PS417_20860 +0.6 1.3 DNA polymerase III subunit gamma/tau compare
PS417_10290 +0.6 2.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_06790 +0.6 2.1 arabinose transporter permease compare
PS417_10470 +0.6 2.1 membrane protein compare
PS417_15930 +0.6 1.7 thioredoxin reductase compare
PS417_05950 +0.6 1.8 LysR family transcriptional regulator compare
PS417_06140 +0.6 1.0 cold-shock protein compare
PS417_03245 +0.6 3.1 omega amino acid--pyruvate aminotransferase compare
PS417_27475 +0.6 1.3 membrane protein compare
PS417_20340 +0.6 1.0 hypothetical protein compare
PS417_19610 +0.6 1.4 molybdenum cofactor sulfurase compare
PS417_25030 +0.6 1.7 hypothetical protein compare
PS417_18845 +0.6 0.9 peptidase compare
PS417_12400 +0.6 1.6 oxidoreductase compare
PS417_01735 +0.6 1.0 ABC transporter permease compare
PS417_20235 +0.6 1.7 hypothetical protein compare
PS417_05325 +0.6 1.4 fimbrial protein compare
PS417_23490 +0.6 0.6 dihydrofolate reductase compare
PS417_02985 +0.6 3.3 diguanylate cyclase compare
PS417_28325 +0.6 0.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_15875 +0.6 0.9 LuxR family transcriptional regulator compare
PS417_01960 +0.6 1.4 pilus assembly protein compare
PS417_23815 +0.6 2.6 pseudouridine synthase compare
PS417_21900 +0.6 1.5 allophanate hydrolase compare
PS417_19605 +0.6 0.5 hypothetical protein compare
PS417_20245 +0.6 2.0 copper resistance protein CopD compare
PS417_11670 +0.6 1.7 multidrug transporter MATE compare
PS417_24185 +0.6 1.2 hypothetical protein compare
PS417_27255 +0.6 2.6 glycine cleavage system protein T compare
PS417_21910 +0.6 2.3 LamB/YcsF family protein compare
PS417_09695 +0.6 0.7 hydrolase compare
PS417_14975 +0.6 1.1 tRNA hydroxylase compare
PS417_01000 +0.6 1.7 Fis family transcriptional regulator compare
PS417_26125 +0.6 2.2 glutathione S-transferase compare
PS417_16165 +0.6 1.9 ABC transporter substrate-binding protein compare
PS417_18150 +0.6 1.7 chemotaxis protein CheY compare
PS417_18470 +0.6 1.8 hypothetical protein compare
PS417_21855 +0.5 1.3 hypothetical protein compare
PS417_12480 +0.5 1.8 peptidase C39 compare
PS417_04305 +0.5 0.5 aspartate ammonia-lyase compare
PS417_20530 +0.5 2.3 3-oxoadipate enol-lactonase compare
PS417_14655 +0.5 0.7 lysine transporter LysE compare


Specific Phenotypes

For 2 genes in this experiment