Experiment set19IT035 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_34; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1986 -6.1 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_0293 -4.9 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -4.9 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0082 -4.8 -8.6 tryptophan synthase alpha chain compare
PP_4679 -4.5 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5303 -4.4 -7.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0083 -4.4 -8.8 tryptophan synthase beta chain compare
PP_0289 -4.3 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1988 -4.2 -8.2 3-isopropylmalate dehydrogenase compare
PP_1985 -4.0 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_4678 -3.9 -12.3 Ketol-acid reductoisomerase compare
PP_5098 -3.9 -7.4 methionine biosynthesis protein MetW compare
PP_2371 -3.9 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5348 -3.8 -8.5 Transcriptional regulator, LysR family compare
PP_4696 -3.8 -7.3 Nitrogen regulation protein NR(I) compare
PP_4680 -3.7 -12.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4804 -3.7 -3.6 RlpA-like lipoprotein compare
PP_4909 -3.7 -8.8 phosphoserine phosphatase compare
PP_0966 -3.6 -7.9 Histidinol dehydrogenase compare
PP_1088 -3.6 -10.2 Argininosuccinate synthase compare
PP_5014 -3.6 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_5015 -3.5 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5128 -3.4 -8.0 Dihydroxy-acid dehydratase compare
PP_5347 -3.3 -8.3 pyruvate carboxylase subunit A compare
PP_3511 -3.3 -6.9 Branched-chain-amino-acid aminotransferase compare
PP_0184 -3.3 -6.7 Argininosuccinate lyase compare
PP_1654 -3.3 -3.8 cysteine synthase B compare
PP_1898 -3.3 -4.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5346 -3.2 -7.4 pyruvate carboxylase subunit B compare
PP_4964 -3.2 -4.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0967 -3.1 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1912 -3.0 -6.9 Phosphate acyltransferase compare
PP_5185 -3.0 -4.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5155 -3.0 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0290 -2.9 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1428 -2.8 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_0421 -2.7 -5.6 Anthranilate phosphoribosyltransferase compare
PP_4902 -2.7 -3.5 Oligoribonuclease compare
PP_0417 -2.7 -11.7 Anthranilate synthase component 1 compare
PP_1079 -2.7 -6.8 Ornithine carbamoyltransferase compare
PP_4122 -2.6 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0965 -2.6 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2370 -2.6 -3.3 conserved protein of unknown function compare
PP_3999 -2.6 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_1995 -2.5 -5.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -2.5 -9.4 homoserine O-acetyltransferase compare
PP_0422 -2.5 -3.7 Indole-3-glycerol phosphate synthase compare
PP_0420 -2.4 -7.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3245 -2.4 -2.7 conserved protein of unknown function compare
PP_1362 -2.3 -3.7 pyruvate kinase II compare
PP_2328 -2.3 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -2.3 -3.1 putative Sensor histidine kinase compare
PP_2145 -2.3 -2.9 beta-N-acetylglucosaminidase compare
PP_1025 -2.3 -8.5 2-isopropylmalate synthase compare
PP_0292 -2.3 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4994 -2.1 -4.8 conserved protein of unknown function compare
PP_2168 -2.1 -6.6 Transaldolase compare
PP_2999 -2.1 -1.9 Glyoxalase family protein compare
PP_2327 -2.0 -4.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5289 -2.0 -2.7 Acetylglutamate kinase compare
PP_1231 -2.0 -5.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -1.9 -7.0 O-succinylhomoserine sulfhydrylase compare
PP_4726 -1.9 -2.3 Chaperone protein DnaJ compare
PP_5571 -1.9 -1.8 conserved protein of unknown function compare
PP_2378 -1.9 -3.3 Fe/S biogenesis protein NfuA compare
PP_4895 -1.8 -2.4 tRNA dimethylallyltransferase compare
PP_4874 -1.8 -1.7 50S ribosomal protein L9 compare
PP_t12 -1.7 -1.3 tRNA-Thr compare
PP_4700 -1.7 -2.9 pantothenate synthetase compare
PP_4546 -1.6 -4.2 ATP-dependent helicase HrpA compare
PP_5038 -1.6 -3.9 conserved lipoprotein of unknown function compare
PP_1366 -1.6 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_5350 -1.6 -2.9 Transcriptional regulator, RpiR family compare
PP_3505 -1.6 -1.8 conserved protein of unknown function compare
PP_5583 -1.6 -2.6 conserved protein of unknown function compare
PP_3417 -1.5 -3.8 D-gluconate transporter compare
PP_5471 -1.5 -2.2 putative response regulator receiver protein compare
PP_0001 -1.5 -1.3 probable chromosome-partitioning protein compare
PP_1664 -1.5 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4785 -1.5 -5.6 conserved exported protein of unknown function compare
PP_1022 -1.5 -3.6 glucose 6-phosphate-1-dehydrogenase compare
PP_0366 -1.5 -3.2 dethiobiotin synthetase compare
PP_5217 -1.4 -6.9 Polyphosphate kinase compare
PP_3637 -1.4 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5048 -1.4 -4.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0065 -1.4 -2.6 NAD-binding component of TrK potassium transporter compare
PP_1609 -1.4 -3.0 conserved protein of unknown function compare
PP_0962 -1.4 -1.9 toluene-tolerance protein compare
PP_0362 -1.4 -6.6 Biotin synthase compare
PP_0291 -1.4 -1.6 conserved protein of unknown function compare
PP_4697 -1.4 -1.9 poly(A) polymerase compare
PP_0122 -1.3 -2.7 conserved exported protein of unknown function compare
PP_4099 -1.3 -12.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2322 -1.3 -2.9 Major outer membrane lipoprotein compare
PP_3164 -1.3 -2.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5114 -1.3 -2.3 putative adenine methyltransferase compare
PP_1041 -1.3 -2.3 twin arginine protein export complex subunit compare
PP_3378 -1.3 -2.0 putative 2-ketogluconokinase compare
PP_0365 -1.3 -5.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1656 -1.3 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_t29 -1.2 -1.9 tRNA-Ala compare
PP_0363 -1.2 -5.5 8-amino-7-oxononanoate synthase compare
PP_4977 -1.2 -5.9 5,10-methylenetetrahydrofolate reductase compare
PP_1454 -1.2 -2.3 conserved protein of unknown function compare
PP_1650 -1.2 -9.9 Sensor protein GacS compare
PP_2429 -1.1 -1.3 putative Membrane protein compare
PP_1237 -1.1 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2820 -1.1 -1.7 HTH-type transcriptional regulator nfxB compare
PP_0725 -1.1 -2.5 conserved hypothetical TPR repeat protein compare
PP_3891 -1.1 -2.7 conserved protein of unknown function compare
PP_0393 -1.1 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5537 -1.0 -3.1 conserved membrane protein of unknown function compare
PP_5203 -1.0 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_2388 -1.0 -2.3 Transporter, LysE family compare
PP_2631 -1.0 -1.7 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1426 -1.0 -5.4 L-aspartate oxidase compare
PP_0787 -1.0 -2.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4477 -1.0 -3.1 N-succinylarginine dihydrolase compare
PP_5054 -1.0 -1.4 glutaredoxin 3 compare
PP_3241 -1.0 -1.2 conserved exported protein of unknown function compare
PP_0364 -1.0 -3.4 pimeloyl-[acp] methyl ester esterase compare
PP_1672 -1.0 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1733 -1.0 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_1683 -1.0 -1.6 Transcriptional regulator, MarR family compare
PP_0261 -1.0 -3.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4695 -1.0 -4.9 Sensory box histidine kinase compare
PP_0547 -1.0 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1764 -1.0 -1.7 Phosphoglycolate phosphatase 2 compare
PP_4943 -1.0 -1.5 putative Glycosyl transferase compare
PP_4693 -1.0 -2.3 RNA polymerase-binding transcription factor DksA compare
PP_0232 -1.0 -1.1 ATP-binding taurine transporter subunit compare
PP_5639 -1.0 -4.3 conserved exported protein of unknown function compare
PP_2375 -1.0 -6.0 cobalamin-dependent methionine synthase compare
PP_3094 -1.0 -2.3 conserved exported protein of unknown function compare
PP_4254 -1.0 -1.8 conserved protein of unknown function compare
PP_4984 -1.0 -3.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3052 -1.0 -1.1 conserved protein of unknown function compare
PP_0775 -1.0 -1.5 conserved protein of unknown function compare
PP_5328 -1.0 -1.5 putative phosphate transport system permease protein compare
PP_5104 -1.0 -3.7 thiazole synthase compare
PP_4340 -1.0 -1.0 response regulator for chemotactic signal transduction compare
PP_3946 -0.9 -1.1 HTH-type transcriptional repressor NicR compare
PP_0381 -0.9 -4.5 Coenzyme PQQ synthesis protein F compare
PP_1808 -0.9 -2.8 glucose-6-phosphate isomerase compare
PP_4480 -0.9 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_1655 -0.9 -1.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2163 -0.9 -2.9 VacJ lipoprotein compare
PP_2142 -0.9 -1.3 Cell division inhibitor SulA compare
PP_0138 -0.9 -4.9 conserved membrane protein of unknown function compare
PP_2032 -0.9 -3.2 putative ATPase compare
PP_1322 -0.9 -1.3 putative Lipoprotein compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4642 -0.9 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_0536 -0.9 -2.1 conserved protein of unknown function compare
PP_1568 -0.9 -1.1 conserved protein of unknown function compare
PP_1217 -0.9 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2880 -0.9 -1.6 Transcriptional regulator, TetR family compare
PP_0910 -0.9 -3.3 conserved exported protein of unknown function compare
PP_4660 -0.9 -1.9 Transcriptional regulator, LysR family compare
PP_4045 -0.9 -1.8 conserved protein of unknown function compare
PP_3409 -0.9 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_0846 -0.9 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_2765 -0.9 -1.6 putative Sulfonate monooxygenase MsuD compare
PP_0434 -0.8 -1.7 Anhydro-N-acetylmuramic acid kinase compare
PP_5310 -0.8 -2.6 junction-specific ATP-dependent DNA helicase compare
PP_5216 -0.8 -1.2 exopolyphosphatase compare
PP_1381 -0.8 -1.0 4-carboxymuconolactone decarboxylase compare
PP_5393 -0.8 -0.9 putative metal-binding chaperone compare
PP_2320 -0.8 -4.8 conserved exported protein of unknown function compare
PP_1000 -0.8 -2.3 ornithine carbamoyltransferase, catabolic compare
PP_2547 -0.8 -2.7 Transcriptional regulator, LysR family compare
PP_3376 -0.8 -2.5 putative phosphonate dehydrogenase compare
PP_5619 -0.8 -2.0 protein of unknown function compare
PP_2928 -0.8 -3.5 Saccharopine dehydrogenase compare
PP_3903 -0.8 -1.3 conserved protein of unknown function compare
PP_1348 -0.8 -2.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5609 -0.8 -2.2 conserved protein of unknown function compare
PP_4338 -0.8 -3.4 Chemotaxis histidine kinase CheA compare
PP_3480 -0.8 -1.4 conserved protein of unknown function compare
PP_2196 -0.8 -1.8 agmatinase compare
PP_5681 -0.8 -2.5 conserved protein of unknown function compare
PP_2090 -0.8 -2.1 Uroporphyrinogen-III C-methyltransferase compare
PP_0339 -0.8 -0.9 Pyruvate dehydrogenase E1 component compare
PP_1233 -0.8 -1.9 sulfurtransferase compare
PP_2000 -0.8 -0.7 amidophosphoribosyl transferase compare
PP_1734 -0.8 -2.0 Probable septum site-determining protein MinC compare
PP_2088 -0.8 -1.8 RNA polymerase sigma factor SigX compare
PP_5598 -0.8 -1.5 conserved protein of unknown function compare
PP_5324 -0.8 -1.0 Response regulator compare
PP_0048 -0.8 -0.9 conserved protein of unknown function compare
PP_4681 -0.8 -2.1 conserved protein of unknown function compare
PP_1871 -0.8 -3.4 Protease HtpX compare
PP_3695 -0.8 -4.3 conserved protein of unknown function compare
PP_1009 -0.8 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5075 -0.8 -4.2 glutamate synthase (NADPH) beta subunit compare
PP_5661 -0.7 -1.5 putative lipoprotein compare
PP_5248 -0.7 -1.0 putative hydrolase compare
PP_5227 -0.7 -2.9 diaminopimelate decarboxylase compare
PP_1215 -0.7 -0.8 Crossover junction endodeoxyribonuclease RuvC compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms