Experiment set19IT034 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_34; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1898 -5.2 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1986 -5.1 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_1988 -4.7 -8.8 3-isopropylmalate dehydrogenase compare
PP_0001 -4.4 -2.8 probable chromosome-partitioning protein compare
PP_0082 -4.4 -8.5 tryptophan synthase alpha chain compare
PP_4696 -4.3 -5.9 Nitrogen regulation protein NR(I) compare
PP_0422 -4.3 -6.0 Indole-3-glycerol phosphate synthase compare
PP_0846 -4.1 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_0289 -3.9 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -3.9 -8.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5155 -3.8 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4678 -3.7 -10.8 Ketol-acid reductoisomerase compare
PP_0966 -3.7 -8.3 Histidinol dehydrogenase compare
PP_4909 -3.6 -7.6 phosphoserine phosphatase compare
PP_4890 -3.6 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_4726 -3.5 -3.8 Chaperone protein DnaJ compare
PP_5185 -3.5 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -3.4 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5346 -3.4 -7.3 pyruvate carboxylase subunit B compare
PP_4126 -3.3 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_5128 -3.3 -6.9 Dihydroxy-acid dehydratase compare
PP_4964 -3.3 -4.4 D-erythrose 4-phosphate dehydrogenase compare
PP_0420 -3.2 -7.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -3.2 -5.8 Branched-chain-amino-acid aminotransferase compare
PP_0290 -3.2 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -3.1 -10.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -3.0 -9.8 homoserine O-acetyltransferase compare
PP_1362 -3.0 -5.3 pyruvate kinase II compare
PP_1985 -3.0 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_1025 -3.0 -8.9 2-isopropylmalate synthase compare
PP_0184 -3.0 -6.2 Argininosuccinate lyase compare
PP_4679 -2.9 -4.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -2.9 -5.8 tryptophan synthase beta chain compare
PP_1079 -2.9 -4.0 Ornithine carbamoyltransferase compare
PP_5015 -2.9 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5098 -2.8 -5.3 methionine biosynthesis protein MetW compare
PP_1088 -2.7 -7.5 Argininosuccinate synthase compare
PP_0965 -2.7 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -2.6 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4804 -2.6 -4.2 RlpA-like lipoprotein compare
PP_0025 -2.5 -1.6 hypothetical protein compare
PP_0293 -2.5 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1142 -2.5 -1.4 conserved protein of unknown function compare
PP_1022 -2.4 -6.7 glucose 6-phosphate-1-dehydrogenase compare
PP_5348 -2.4 -4.8 Transcriptional regulator, LysR family compare
PP_0421 -2.4 -5.1 Anthranilate phosphoribosyltransferase compare
PP_2402 -2.3 -2.5 putative Sensor histidine kinase compare
PP_1995 -2.3 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4099 -2.2 -20.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -2.2 -17.7 Sensor protein GacS compare
PP_2371 -2.1 -4.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1237 -2.1 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -2.1 -3.0 conserved protein of unknown function compare
PP_0417 -2.1 -9.0 Anthranilate synthase component 1 compare
PP_4701 -2.0 -1.3 glucose-6-phosphate isomerase compare
PP_5289 -1.9 -3.2 Acetylglutamate kinase compare
PP_2370 -1.9 -2.2 conserved protein of unknown function compare
PP_4700 -1.9 -2.8 pantothenate synthetase compare
PP_2001 -1.9 -4.8 O-succinylhomoserine sulfhydrylase compare
PP_0393 -1.8 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2168 -1.8 -5.9 Transaldolase compare
PP_t29 -1.8 -1.8 tRNA-Ala compare
PP_4785 -1.8 -5.0 conserved exported protein of unknown function compare
PP_4902 -1.7 -2.0 Oligoribonuclease compare
PP_2337 -1.7 -2.1 aconitate isomerase compare
PP_2322 -1.7 -3.1 Major outer membrane lipoprotein compare
PP_0787 -1.6 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1186 -1.6 -1.6 two component system DNA-binding transcriptional dual regulator compare
PP_5350 -1.6 -2.3 Transcriptional regulator, RpiR family compare
PP_5217 -1.5 -6.9 Polyphosphate kinase compare
PP_2345 -1.5 -2.7 conserved exported protein of unknown function compare
PP_2328 -1.5 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_5303 -1.5 -3.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4199 -1.5 -1.2 putative Lipoprotein compare
PP_3034 -1.5 -3.0 putative Regulator protein compare
PP_5347 -1.5 -4.9 pyruvate carboxylase subunit A compare
PP_0547 -1.5 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0959 -1.5 -2.0 phospholipid ABC transporter compare
PP_5507 -1.4 -3.3 protein of unknown function compare
PP_2341 -1.4 -2.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3505 -1.4 -2.4 conserved protein of unknown function compare
PP_0065 -1.4 -2.3 NAD-binding component of TrK potassium transporter compare
PP_1826 -1.4 -1.9 Hydrolase, isochorismatase family compare
PP_4254 -1.4 -2.3 conserved protein of unknown function compare
PP_0362 -1.4 -5.6 Biotin synthase compare
PP_5017 -1.4 -1.2 Sec-independent protein translocase protein TatB compare
PP_1231 -1.4 -3.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1656 -1.4 -5.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0719 -1.4 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4379 -1.3 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2302 -1.3 -3.3 DNA-binding, ATP-dependent protease compare
PP_4993 -1.3 -3.0 Glutathione synthetase compare
PP_4387 -1.3 -2.2 conserved exported protein of unknown function compare
PP_3508 -1.3 -3.4 Protein CobW compare
PP_4560 -1.3 -1.7 putative Ribonuclease BN compare
PP_5216 -1.3 -1.5 exopolyphosphatase compare
PP_1366 -1.3 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_5014 -1.3 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -1.3 -2.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2960 -1.3 -3.2 transcriptional regulator, AraC family compare
PP_0653 -1.3 -1.3 conserved protein of unknown function compare
PP_4693 -1.3 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_4477 -1.2 -4.2 N-succinylarginine dihydrolase compare
PP_4943 -1.2 -1.7 putative Glycosyl transferase compare
PP_4782 -1.2 -1.9 Phosphomethylpyrimidine kinase compare
PP_1824 -1.2 -1.3 Smr domain protein compare
PP_4984 -1.2 -4.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3332 -1.2 -2.8 putative cytochrome c-type protein compare
PP_5253 -1.2 -2.9 Arylesterase compare
PP_4480 -1.2 -4.1 arginine N-succinyltransferase, subunit alpha compare
PP_5701 -1.2 -2.1 conserved protein of unknown function compare
PP_3892 -1.2 -1.2 conserved protein of unknown function compare
PP_1097 -1.2 -1.3 Methionine--tRNA ligase compare
PP_1269 -1.2 -1.1 Universal stress protein family compare
PP_5028 -1.2 -2.2 proline iminopeptidase compare
PP_1733 -1.1 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3417 -1.1 -2.8 D-gluconate transporter compare
PP_0365 -1.1 -4.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2320 -1.1 -5.9 conserved exported protein of unknown function compare
PP_0364 -1.1 -4.0 pimeloyl-[acp] methyl ester esterase compare
PP_4977 -1.1 -4.8 5,10-methylenetetrahydrofolate reductase compare
PP_4338 -1.1 -3.9 Chemotaxis histidine kinase CheA compare
PP_4392 -1.1 -4.0 chemotaxis protein methyltransferase compare
PP_5644 -1.1 -2.6 conserved membrane protein of unknown function compare
PP_2568 -1.1 -1.1 Ring-cleaving dioxygenase compare
PP_4159 -1.1 -2.2 Potassium-transporting ATPase C chain compare
PP_1655 -1.0 -1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3760 -1.0 -4.5 putative methyltransferase compare
PP_1571 -1.0 -1.8 conserved protein of unknown function compare
PP_0363 -1.0 -5.4 8-amino-7-oxononanoate synthase compare
PP_1426 -1.0 -6.2 L-aspartate oxidase compare
PP_3307 -1.0 -1.6 conserved protein of unknown function compare
PP_4340 -1.0 -1.6 response regulator for chemotactic signal transduction compare
PP_2373 -1.0 -2.2 conserved protein of unknown function compare
PP_4004 -1.0 -2.3 DNA translocase FtsK compare
PP_5054 -1.0 -1.5 glutaredoxin 3 compare
PP_0366 -1.0 -3.2 dethiobiotin synthetase compare
PP_3643 -1.0 -2.9 putative Oxidoreductase compare
PP_2375 -1.0 -5.9 cobalamin-dependent methionine synthase compare
PP_0254 -1.0 -1.8 conserved protein of unknown function compare
PP_0725 -1.0 -2.9 conserved hypothetical TPR repeat protein compare
PP_0405 -1.0 -4.0 conserved protein of unknown function compare
PP_3522 -1.0 -2.0 conserved protein of unknown function compare
PP_1554 -1.0 -2.4 conserved protein of unknown function compare
PP_1734 -1.0 -1.9 Probable septum site-determining protein MinC compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_2127 -1.0 -2.9 Sensor histidine kinase compare
PP_2131 -1.0 -2.9 DNA-binding ATPase involved in replication compare
PP_1678 -1.0 -1.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5203 -0.9 -3.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_5227 -0.9 -3.4 diaminopimelate decarboxylase compare
PP_2222 -0.9 -2.3 conserved protein of unknown function compare
PP_3971 -0.9 -1.3 conserved protein of unknown function compare
PP_5628 -0.9 -2.1 conserved protein of unknown function compare
PP_1570 -0.9 -1.7 Head-tail adaptor compare
PP_3035 -0.9 -1.6 conserved protein of unknown function compare
PP_4695 -0.9 -5.1 Sensory box histidine kinase compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_5035 -0.9 -3.0 Histidine utilization repressor compare
PP_3938 -0.9 -1.1 conserved protein of unknown function compare
PP_2976 -0.9 -1.1 putative transposase compare
PP_5000 -0.9 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_1355 -0.9 -3.2 Muropeptide permease AmpG compare
PP_0960 -0.9 -2.3 phospholipid ABC transporter binding protein compare
PP_0855 -0.9 -1.3 conserved protein of unknown function compare
PP_5327 -0.9 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_1876 -0.9 -1.4 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1770 -0.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4699 -0.9 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5639 -0.9 -3.4 conserved exported protein of unknown function compare
PP_1822 -0.8 -2.2 conserved protein of unknown function compare
PP_5104 -0.8 -3.2 thiazole synthase compare
PP_0062 -0.8 -2.5 3-methyl-adenine DNA glycosylase I compare
PP_3409 -0.8 -1.3 putative Cobalamin biosynthesis protein cobE compare
PP_1110 -0.8 -2.0 serine acetyltransferase compare
PP_1528 -0.8 -1.0 conserved protein of unknown function compare
PP_0789 -0.8 -1.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5SB -0.8 -1.9 5S ribosomal RNA compare
PP_5075 -0.8 -5.1 glutamate synthase (NADPH) beta subunit compare
PP_5073 -0.8 -1.1 conserved exported protein of unknown function compare
PP_1346 -0.8 -2.4 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3672 -0.8 -2.7 conserved protein of unknown function compare
PP_0138 -0.8 -3.9 conserved membrane protein of unknown function compare
PP_2820 -0.8 -2.3 HTH-type transcriptional regulator nfxB compare
PP_1048 -0.8 -1.0 putative protein secretion protein for export compare
PP_5223 -0.8 -2.0 regulator of nucleotide diphosphokinase compare
PP_2203 -0.8 -1.5 conserved protein of unknown function compare
PP_4406 -0.8 -1.3 conserved protein of unknown function compare
PP_3197 -0.8 -2.9 Glyoxalase family protein compare
PP_5674 -0.8 -0.9 conserved protein of unknown function compare
PP_5393 -0.8 -1.0 putative metal-binding chaperone compare
PP_4697 -0.8 -1.2 poly(A) polymerase compare
PP_0345 -0.8 -1.7 putative Heptose kinase WapP compare
PP_4874 -0.8 -0.8 50S ribosomal protein L9 compare
PP_1987 -0.8 -1.0 Methlytransferase, UbiE/COQ5 family compare
PP_4102 -0.8 -1.6 conserved protein of unknown function compare
PP_3637 -0.8 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1654 -0.8 -1.5 cysteine synthase B compare
PP_3591 -0.8 -2.9 Delta 1-piperideine-2-carboxylate reductase compare
PP_2903 -0.8 -1.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms