Experiment set19IT033 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_30; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0292 -5.2 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -5.2 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5155 -4.3 -6.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5571 -3.3 -1.8 conserved protein of unknown function compare
PP_4828 -3.1 -1.6 Precorrin-8X methylmutase compare
PP_0966 -3.1 -8.5 Histidinol dehydrogenase compare
PP_3511 -2.9 -7.6 Branched-chain-amino-acid aminotransferase compare
PP_1988 -2.9 -6.5 3-isopropylmalate dehydrogenase compare
PP_5185 -2.8 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2196 -2.8 -2.0 agmatinase compare
PP_1079 -2.7 -3.9 Ornithine carbamoyltransferase compare
PP_5097 -2.7 -9.0 homoserine O-acetyltransferase compare
PP_5346 -2.7 -6.7 pyruvate carboxylase subunit B compare
PP_0082 -2.7 -5.4 tryptophan synthase alpha chain compare
PP_1898 -2.6 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5098 -2.5 -5.6 methionine biosynthesis protein MetW compare
PP_2633 -2.5 -1.8 conserved protein of unknown function compare
PP_1985 -2.5 -3.5 3-isopropylmalate dehydratase large subunit compare
PP_0673 -2.4 -1.9 conserved protein of unknown function compare
PP_1571 -2.4 -3.9 conserved protein of unknown function compare
PP_4122 -2.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0290 -2.4 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4701 -2.4 -1.2 glucose-6-phosphate isomerase compare
PP_0377 -2.3 -1.8 coenzyme PQQ synthesis protein D compare
PP_3532 -2.3 -2.1 Transcriptional regulator, AsnC family compare
PP_0593 -2.3 -1.2 putative ribosome-binding factor compare
PP_5347 -2.3 -8.2 pyruvate carboxylase subunit A compare
PP_5128 -2.3 -5.1 Dihydroxy-acid dehydratase compare
PP_2168 -2.2 -6.2 Transaldolase compare
PP_0083 -2.2 -4.4 tryptophan synthase beta chain compare
PP_4994 -2.2 -3.3 conserved protein of unknown function compare
PP_0406 -2.2 -3.0 Nucleotidyltransferase family protein compare
PP_4680 -2.2 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0566 -2.2 -1.4 translation-related factor compare
PP_5015 -2.1 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0150 -2.1 -3.0 conserved exported protein of unknown function compare
PP_5014 -2.1 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -2.1 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1632 -2.1 -1.6 conserved protein of unknown function compare
PP_3241 -2.1 -1.5 conserved exported protein of unknown function compare
PP_5348 -2.1 -5.0 Transcriptional regulator, LysR family compare
PP_4678 -2.1 -8.1 Ketol-acid reductoisomerase compare
PP_1088 -2.1 -6.7 Argininosuccinate synthase compare
PP_2327 -2.0 -4.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5289 -2.0 -2.0 Acetylglutamate kinase compare
PP_1678 -2.0 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1568 -2.0 -1.5 conserved protein of unknown function compare
PP_0184 -1.9 -5.0 Argininosuccinate lyase compare
PP_4679 -1.9 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_t11 -1.9 -2.6 tRNA-Lys compare
PP_2328 -1.9 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_2001 -1.9 -5.6 O-succinylhomoserine sulfhydrylase compare
PP_4785 -1.9 -5.9 conserved exported protein of unknown function compare
PP_5350 -1.9 -3.1 Transcriptional regulator, RpiR family compare
PP_5303 -1.8 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2414 -1.8 -1.6 conserved exported protein of unknown function compare
PP_0365 -1.8 -5.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0289 -1.8 -5.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0291 -1.7 -3.1 conserved protein of unknown function compare
PP_4296 -1.7 -1.8 conserved exported protein of unknown function compare
PP_5217 -1.7 -7.3 Polyphosphate kinase compare
PP_0999 -1.7 -3.0 carbamate kinase compare
PP_2898 -1.7 -1.8 conserved exported protein of unknown function compare
PP_4528 -1.7 -1.9 conserved protein of unknown function compare
PP_0967 -1.7 -5.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1025 -1.7 -7.1 2-isopropylmalate synthase compare
PP_1237 -1.6 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0422 -1.6 -2.5 Indole-3-glycerol phosphate synthase compare
PP_4262 -1.6 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3999 -1.6 -5.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4406 -1.6 -2.4 conserved protein of unknown function compare
PP_4726 -1.6 -2.4 Chaperone protein DnaJ compare
PP_2661 -1.6 -4.3 conserved protein of unknown function compare
PP_1097 -1.6 -1.1 Methionine--tRNA ligase compare
PP_0362 -1.6 -6.3 Biotin synthase compare
PP_1022 -1.6 -3.4 glucose 6-phosphate-1-dehydrogenase compare
PP_4480 -1.6 -5.8 arginine N-succinyltransferase, subunit alpha compare
PP_1045 -1.5 -1.4 Type II secretion pathway protein XcpP compare
PP_0366 -1.5 -4.5 dethiobiotin synthetase compare
PP_4066 -1.5 -2.1 methylglutaconyl-CoA hydratase compare
PP_4424 -1.5 -1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1038 -1.5 -1.4 conserved protein of unknown function compare
PP_5701 -1.5 -1.6 conserved protein of unknown function compare
PP_5533 -1.5 -1.4 conserved protein of unknown function compare
PP_0420 -1.5 -4.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1729 -1.5 -1.7 conserved protein of unknown function compare
PP_2370 -1.5 -2.9 conserved protein of unknown function compare
PP_5202 -1.4 -1.5 putative cell division protein compare
PP_0048 -1.4 -1.2 conserved protein of unknown function compare
PP_2253 -1.4 -1.9 Transcriptional regulator, GntR family compare
PP_2976 -1.4 -1.2 putative transposase compare
PP_2847 -1.4 -1.4 Urease accessory protein UreJ compare
PP_1679 -1.4 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0685 -1.4 -2.2 conserved protein of unknown function compare
PP_0363 -1.3 -4.7 8-amino-7-oxononanoate synthase compare
PP_0789 -1.3 -3.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5612 -1.3 -4.2 protein of unknown function compare
PP_2371 -1.3 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5608 -1.3 -3.2 putative exported protein compare
PP_5639 -1.3 -4.8 conserved exported protein of unknown function compare
PP_1231 -1.3 -2.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2137 -1.3 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_3637 -1.3 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3808 -1.2 -1.1 Antibiotic synthesis protein MbtH compare
PP_2046 -1.2 -2.4 Transcriptional regulator, LysR family compare
PP_1410 -1.2 -0.8 conserved protein of unknown function compare
PP_4532 -1.2 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5600 -1.2 -1.3 conserved protein of unknown function compare
PP_3417 -1.2 -2.6 D-gluconate transporter compare
PP_2087 -1.2 -2.5 CmpX protein compare
PP_2765 -1.2 -1.4 putative Sulfonate monooxygenase MsuD compare
PP_4354 -1.2 -2.1 flagellar export apparatus subunit compare
PP_5248 -1.2 -1.4 putative hydrolase compare
PP_4699 -1.2 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4804 -1.2 -1.8 RlpA-like lipoprotein compare
PP_0888 -1.2 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4697 -1.2 -2.5 poly(A) polymerase compare
PP_1654 -1.1 -1.5 cysteine synthase B compare
PP_5381 -1.1 -2.0 hypothetical protein compare
PP_1774 -1.1 -2.3 conserved exported protein of unknown function compare
PP_3052 -1.1 -1.0 conserved protein of unknown function compare
PP_0787 -1.1 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0775 -1.1 -1.6 conserved protein of unknown function compare
PP_4832 -1.1 -2.4 Precorrin-6x reductase compare
PP_2378 -1.1 -1.6 Fe/S biogenesis protein NfuA compare
PP_0182 -1.1 -2.8 conserved protein of unknown function compare
PP_2107 -1.1 -1.4 conserved protein of unknown function compare
PP_0916 -1.1 -1.8 Amino acid transporter LysE compare
PP_2132 -1.1 -2.0 Universal stress protein compare
PP_3824 -1.1 -1.4 conserved exported protein of unknown function compare
PP_3051 -1.1 -2.1 Pyocin R2_PP, tail spike protein compare
PP_2153 -1.1 -1.4 conserved protein of unknown function compare
PP_3245 -1.1 -1.4 conserved protein of unknown function compare
PP_1390 -1.1 -2.3 conserved exported protein of unknown function compare
PP_4797 -1.1 -1.7 conserved protein of unknown function compare
PP_2211 -1.1 -3.2 Transcriptional regulator, AraC family compare
PP_1328 -1.1 -0.9 Protein MraZ compare
PP_1994 -1.1 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_1362 -1.1 -2.4 pyruvate kinase II compare
PP_4984 -1.1 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1216 -1.1 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0138 -1.1 -4.3 conserved membrane protein of unknown function compare
PP_0547 -1.1 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1733 -1.1 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_0831 -1.1 -2.6 hypothetical protein compare
PP_4271 -1.1 -0.8 conserved protein of unknown function compare
PP_0417 -1.1 -6.0 Anthranilate synthase component 1 compare
PP_2390 -1.1 -3.6 Transcriptional regulator, LysR family compare
PP_1122 -1.1 -1.3 OmpA family protein compare
PP_0821 -1.0 -2.1 conserved exported protein of unknown function compare
PP_1011 -1.0 -4.0 glucokinase compare
PP_3946 -1.0 -1.2 HTH-type transcriptional repressor NicR compare
PP_4696 -1.0 -2.7 Nitrogen regulation protein NR(I) compare
PP_1995 -1.0 -3.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2313 -1.0 -1.6 conserved membrane protein of unknown function compare
PP_4890 -1.0 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_2668 -1.0 -1.3 ABC efflux transporter, ATP-binding protein compare
PP_4964 -1.0 -1.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0725 -1.0 -2.6 conserved hypothetical TPR repeat protein compare
PP_1054 -1.0 -1.4 Type II secretion pathway protein XcpZ compare
PP_2475 -1.0 -2.4 Transcriptional regulator, TetR family compare
PP_0962 -1.0 -1.6 toluene-tolerance protein compare
PP_2695 -1.0 -2.2 Transcriptional regulator, LysR family compare
PP_5451 -1.0 -2.3 protein of unknown function compare
PP_2525 -1.0 -2.9 conserved protein of unknown function compare
PP_3938 -1.0 -0.5 conserved protein of unknown function compare
PP_1366 -1.0 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_5583 -1.0 -1.3 conserved protein of unknown function compare
PP_0841 -0.9 -2.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_2416 -0.9 -1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_2756 -0.9 -1.2 conserved protein of unknown function compare
PP_1734 -0.9 -2.3 Probable septum site-determining protein MinC compare
PP_4687 -0.9 -2.4 Hemin import ATP-binding protein HmuV compare
PP_1986 -0.9 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_0642 -0.9 -1.3 conserved membrane protein of unknown function compare
PP_4936 -0.9 -3.7 O-antigen polymerase compare
PP_4909 -0.9 -3.0 phosphoserine phosphatase compare
PP_1673 -0.9 -3.7 cobyrinate a,c-diamide synthase compare
PP_5095 -0.9 -0.6 pyrroline-5-carboxylate reductase compare
PP_3904 -0.9 -1.7 conserved protein of unknown function compare
PP_0122 -0.9 -2.0 conserved exported protein of unknown function compare
PP_0960 -0.9 -2.2 phospholipid ABC transporter binding protein compare
PP_3806 -0.9 -2.2 Hydrolase, isochorismatase family compare
PP_3618 -0.9 -3.4 conserved protein of unknown function compare
PP_5507 -0.9 -1.3 protein of unknown function compare
PP_0025 -0.9 -0.9 hypothetical protein compare
PP_4396 -0.9 -2.0 conserved protein of unknown function compare
PP_4739 -0.9 -1.6 conserved protein of unknown function compare
PP_3551 -0.9 -0.7 DNA-binding response regulator, LuxR family compare
PP_3225 -0.9 -2.5 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_4628 -0.9 -2.7 conserved protein of unknown function compare
PP_1553 -0.9 -0.9 conserved protein of unknown function compare
PP_5054 -0.9 -0.9 glutaredoxin 3 compare
PP_5156 -0.9 -1.8 conserved exported protein of unknown function compare
PP_0921 -0.9 -1.9 Transcriptional regulator, ArsR family compare
PP_5582 -0.9 -0.9 conserved protein of unknown function compare
PP_0364 -0.9 -3.5 pimeloyl-[acp] methyl ester esterase compare
PP_2002 -0.9 -1.4 putative enzyme compare
PP_1912 -0.9 -1.9 Phosphate acyltransferase compare
PP_5430 -0.9 -2.1 protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms