Experiment set19IT032 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_21570 -11.3 -5.3 flagellar basal body rod protein FlgB compare
PS417_19765 -9.6 -9.3 flagellar hook-length control protein compare
PS417_21565 -9.4 -5.1 flagellar basal body rod protein FlgC compare
PS417_01565 -9.4 -4.5 imidazole glycerol phosphate synthase compare
PS417_19730 -9.4 -4.0 flagellar biosynthesis protein FliR compare
PS417_01575 -9.3 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19745 -9.2 -6.5 flagellar assembly protein FliO compare
PS417_21595 -9.1 -4.2 flagellar biosynthesis protein FlgN compare
PS417_01635 -9.1 -5.0 nitrogen regulation protein NR(I) compare
PS417_05635 -9.0 -6.3 membrane protein compare
PS417_19795 -8.6 -10.0 flagellar assembly protein FliH compare
PS417_18595 -8.5 -4.1 3-isopropylmalate dehydratase compare
PS417_19740 -8.3 -7.7 flagellar biosynthesis protein flip compare
PS417_19785 -8.2 -3.6 flagellar biogenesis protein compare
PS417_19725 -8.1 -6.7 flagellar biosynthesis protein FlhB compare
PS417_04415 -8.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23805 -7.6 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_19710 -7.6 -17.5 flagellar biosynthesis protein FlhA compare
PS417_25725 -7.4 -13.3 anthranilate synthase component I compare
PS417_19695 -7.3 -7.8 flagellar biosynthesis sigma factor compare
PS417_21585 -7.3 -8.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19735 -7.3 -5.8 flagellar biosynthesis protein FliQ compare
PS417_19840 -7.3 -8.7 flagellar cap protein FliD compare
PS417_02510 -7.3 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19860 -7.2 -18.9 flagellar hook protein FlgL compare
PS417_19665 -7.1 -4.2 flagellar motor protein MotD compare
PS417_02005 -7.1 -8.4 glutamate synthase compare
PS417_18585 -7.1 -4.9 3-isopropylmalate dehydrogenase compare
PS417_19880 -7.1 -7.0 flagellar basal body L-ring protein compare
PS417_18560 -7.0 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_19650 -7.0 -4.3 chemotaxis protein CheW compare
PS417_23800 -7.0 -8.3 ketol-acid reductoisomerase compare
PS417_19705 -6.8 -3.3 flagellar biosynthesis regulator FlhF compare
PS417_01855 -6.8 -2.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_23950 -6.8 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_19800 -6.7 -2.3 flagellar motor switch protein FliG compare
PS417_25720 -6.6 -7.3 anthranilate synthase component II compare
PS417_18540 -6.6 -4.6 colicin V production CvpA compare
PS417_19825 -6.6 -10.4 ATPase AAA compare
PS417_19865 -6.5 -8.8 flagellar hook protein FlgK compare
PS417_19870 -6.4 -5.3 flagellar rod assembly protein FlgJ compare
PS417_19660 -6.3 -5.6 cobalamin biosynthesis protein CobQ compare
PS417_27835 -6.3 -7.3 endoribonuclease compare
PS417_00185 -6.2 -3.9 tryptophan synthase subunit beta compare
PS417_19885 -6.2 -1.9 flagellar basal body rod protein FlgG compare
PS417_18600 -6.1 -3.0 isopropylmalate isomerase compare
PS417_21575 -5.9 -4.3 chemotaxis protein compare
PS417_04420 -5.9 -10.5 histidinol dehydrogenase compare
PS417_23810 -5.9 -13.2 acetolactate synthase 3 catalytic subunit compare
PS417_23545 -5.8 -2.8 gamma-glutamyl kinase compare
PS417_19850 -5.8 -9.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19655 -5.8 -3.8 chemotaxis protein CheW compare
PS417_12855 -5.8 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01570 -5.8 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_19690 -5.7 -3.5 histidine kinase compare
PS417_21555 -5.7 -8.9 flagellar hook protein FlgE compare
PS417_01850 -5.6 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22350 -5.6 -1.9 Fis family transcriptional regulator compare
PS417_26740 -5.6 -5.6 homoserine acetyltransferase compare
PS417_19755 -5.5 -1.9 flagellar motor switch protein FliM compare
PS417_06200 -5.4 -7.5 protein-PII uridylyltransferase compare
PS417_19790 -5.4 -3.6 ATP synthase compare
PS417_02000 -5.3 -10.8 glutamate synthase compare
PS417_19675 -5.3 -5.3 chemotaxis protein CheY compare
PS417_22445 -5.3 -3.0 ATP-dependent DNA helicase RuvB compare
PS417_08245 -5.1 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18530 -5.0 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_18690 -4.9 -4.0 aromatic amino acid aminotransferase compare
PS417_00160 -4.9 -5.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_05595 -4.9 -8.2 ornithine carbamoyltransferase compare
PS417_19805 -4.9 -3.3 flagellar M-ring protein FliF compare
PS417_01955 -4.8 -9.9 peptidase compare
PS417_22565 -4.8 -1.2 formyltetrahydrofolate deformylase compare
PS417_24745 -4.8 -2.4 gamma-glutamyl phosphate reductase compare
PS417_19835 -4.7 -1.6 flagellar biosynthesis protein FliS compare
PS417_05975 -4.6 -1.1 chemotaxis protein CheW compare
PS417_01640 -4.6 -3.9 histidine kinase compare
PS417_20105 -4.4 -18.7 glycosyl transferase compare
PS417_27795 -4.3 -1.1 orotate phosphoribosyltransferase compare
PS417_19620 -4.3 -2.4 hypothetical protein compare
PS417_23110 -4.3 -6.6 2-isopropylmalate synthase compare
PS417_23995 -4.3 -1.0 preprotein translocase subunit SecG compare
PS417_25710 -4.2 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_08135 -4.2 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21390 -4.2 -4.3 hypothetical protein compare
PS417_22520 -4.2 -2.0 histidine kinase compare
PS417_09085 -4.2 -1.4 hypothetical protein compare
PS417_18570 -4.2 -5.7 peptidoglycan-binding protein compare
PS417_06375 -4.0 -1.0 deoxycytidine triphosphate deaminase compare
PS417_01915 -4.0 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03380 -3.9 -1.4 hypothetical protein compare
PS417_19820 -3.9 -5.8 histidine kinase compare
PS417_01580 -3.9 -1.3 imidazole glycerol phosphate synthase compare
PS417_20160 -3.8 -2.7 cysteine synthase compare
PS417_26745 -3.7 -4.3 methionine biosynthesis protein MetW compare
PS417_26890 -3.7 -6.3 dihydroxy-acid dehydratase compare
PS417_27195 -3.7 -1.2 N-acetylglutamate synthase compare
PS417_27870 -3.7 -4.1 ATP-dependent DNA helicase RecG compare
PS417_19830 -3.6 -3.1 flagellar assembly protein FliT compare
PS417_26995 -3.6 -6.7 phosphoserine phosphatase compare
PS417_27305 -3.6 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_02210 -3.6 -5.6 diguanylate cyclase compare
PS417_12310 -3.5 -6.2 methionine synthase compare
PS417_12290 -3.5 -5.1 sulfite reductase compare
PS417_20610 -3.5 -1.7 hypothetical protein compare
PS417_25715 -3.4 -4.3 anthranilate phosphoribosyltransferase compare
PS417_21125 -3.4 -6.7 phosphoadenosine phosphosulfate reductase compare
PS417_27435 -3.4 -6.8 polyphosphate kinase compare
PS417_16490 -3.4 -1.6 cell division protein FtsK compare
PS417_22355 -3.2 -4.3 glycine cleavage system protein H compare
PS417_05535 -3.2 -1.9 Fis family transcriptional regulator compare
PS417_28230 -3.2 -3.5 transcriptional regulator compare
PS417_24710 -3.2 -4.0 lipoprotein compare
PS417_05575 -3.1 -6.6 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_03560 -3.1 -2.0 GTP-binding protein compare
PS417_22370 -3.1 -4.4 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_20785 -3.1 -3.0 transcriptional regulator compare
PS417_08580 -3.1 -5.6 histidine kinase compare
PS417_03165 -2.9 -3.5 hypothetical protein compare
PS417_07560 -2.9 -2.1 universal stress protein UspA compare
PS417_08090 -2.9 -0.9 3-oxoacyl-ACP reductase compare
PS417_02555 -2.9 -10.8 exoribonuclease R compare
PS417_19350 -2.8 -3.9 GTP cyclohydrolase compare
PS417_00045 -2.8 -1.9 glycerol acyltransferase compare
PS417_23770 -2.8 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_22360 -2.8 -3.2 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
PS417_08125 -2.8 -0.7 prephenate dehydratase compare
PS417_06895 -2.8 -4.0 DNA-binding protein compare
PS417_00085 -2.7 -1.7 16S rRNA methyltransferase compare
PS417_20855 -2.7 -1.3 hypothetical protein compare
PS417_01560 -2.7 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_04650 -2.7 -0.9 D-alanine--D-alanine ligase compare
PS417_27865 -2.7 -2.9 LysR family transcriptional regulator compare
PS417_26990 -2.6 -0.9 RNA pyrophosphohydrolase compare
PS417_02225 -2.6 -2.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26730 -2.6 -0.9 pyrroline-5-carboxylate reductase compare
PS417_20985 -2.6 -2.4 porin compare
PS417_20095 -2.5 -8.8 hypothetical protein compare
PS417_20715 -2.5 -2.9 cytochrome Cbb3 compare
PS417_08185 -2.4 -3.3 glycosyl transferase compare
PS417_22450 -2.3 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_23025 -2.3 -5.9 murein transglycosylase compare
PS417_14065 -2.3 -4.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08540 -2.3 -2.2 RNA helicase compare
PS417_20650 -2.3 -5.9 hypothetical protein compare
PS417_04380 -2.2 -1.2 ABC transporter permease compare
PS417_27800 -2.2 -3.0 exodeoxyribonuclease III compare
PS417_25650 -2.2 -3.3 anhydro-N-acetylmuramic acid kinase compare
PS417_09695 -2.2 -1.4 hydrolase compare
PS417_08195 -2.2 -8.3 hypothetical protein compare
PS417_02280 -2.2 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_20690 -2.2 -4.2 chemotaxis protein compare
PS417_23900 -2.1 -7.0 poly(A) polymerase compare
PS417_27615 -2.1 -5.3 ammonia channel protein compare
PS417_21705 -2.1 -3.4 arginine N-succinyltransferase compare
PS417_20705 -2.1 -3.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_19615 -2.1 -5.6 chemotaxis protein CheW compare
PS417_21475 -2.1 -2.9 HAD family hydrolase compare
PS417_05985 -2.0 -1.7 chemotaxis protein CheY compare
PS417_02980 -2.0 -1.3 chemotaxis protein compare
PS417_20090 -2.0 -4.7 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_14940 -2.0 -1.6 LysR family transcriptional regulator compare
PS417_21510 -2.0 -1.0 histidine kinase compare
PS417_08190 -2.0 -8.2 membrane protein compare
PS417_07620 -2.0 -1.9 beta-hexosaminidase compare
PS417_20665 -2.0 -5.4 hypothetical protein compare
PS417_19645 -2.0 -2.5 chemotaxis protein compare
PS417_25390 -1.9 -3.7 MFS transporter compare
PS417_24500 -1.9 -2.7 DEAD/DEAH box helicase compare
PS417_28220 -1.9 -1.7 LysR family transcriptional regulator compare
PS417_02485 -1.9 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21430 -1.9 -1.7 3-oxoacyl-ACP synthase compare
PS417_28070 -1.9 -6.9 phosphate ABC transporter ATP-binding protein compare
PS417_20775 -1.9 -3.7 coproporphyrinogen III oxidase compare
PS417_03670 -1.9 -5.4 MerR family transcriptional regulator compare
PS417_15495 -1.9 -0.9 FAD-dependent oxidoreductase compare
PS417_15820 -1.9 -1.0 universal stress protein UspA compare
PS417_16465 -1.8 -4.2 sirohydrochlorin ferrochelatase compare
PS417_23210 -1.8 -1.6 serine acetyltransferase compare
PS417_16990 -1.8 -5.0 acyl-CoA dehydrogenase compare
PS417_06680 -1.8 -5.9 nuclease PIN compare
PS417_20585 -1.8 -3.9 chemotaxis protein compare
PS417_19760 -1.8 -3.2 flagellar basal body protein FliL compare
PS417_26985 -1.8 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21655 -1.8 -1.0 aspartate kinase compare
PS417_27010 -1.8 -6.3 threonine dehydratase compare
PS417_03830 -1.8 -6.3 protein disaggregation chaperone compare
PS417_21320 -1.8 -3.4 transcriptional regulator compare
PS417_01920 -1.8 -0.8 ATP-dependent protease subunit HslV compare
PS417_22690 -1.8 -3.3 phosphogluconate dehydratase compare
PS417_01710 -1.7 -3.3 histidine utilization repressor compare
PS417_06245 -1.7 -1.6 zinc metallopeptidase RseP compare
PS417_19685 -1.7 -4.1 protein phosphatase compare
PS417_24840 -1.7 -1.2 hypothetical protein compare
PS417_02270 -1.7 -3.3 carbamoyltransferase compare
PS417_18545 -1.7 -2.3 cell division protein compare
PS417_23095 -1.7 -0.8 exodeoxyribonuclease compare
PS417_02560 -1.7 -1.3 23S rRNA methyltransferase compare
PS417_11400 -1.7 -1.4 phosphoglycerate mutase compare
PS417_15085 -1.6 -3.4 ATPase AAA compare


Specific Phenotypes

For 5 genes in this experiment