Experiment set19IT032 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_30; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_5303 -5.2 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0293 -5.1 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -4.2 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_2137 -3.6 -3.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_1985 -3.6 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_5571 -3.2 -1.8 conserved protein of unknown function compare
PP_1079 -2.8 -5.6 Ornithine carbamoyltransferase compare
PP_1898 -2.7 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_0290 -2.6 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -2.6 -6.3 Argininosuccinate lyase compare
PP_5348 -2.6 -7.9 Transcriptional regulator, LysR family compare
PP_5014 -2.6 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -2.5 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1988 -2.4 -6.5 3-isopropylmalate dehydrogenase compare
PP_4680 -2.4 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -2.4 -5.1 phosphoserine phosphatase compare
PP_5155 -2.4 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -2.4 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4696 -2.4 -4.2 Nitrogen regulation protein NR(I) compare
PP_4890 -2.4 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_2337 -2.3 -2.2 aconitate isomerase compare
PP_5350 -2.3 -2.7 Transcriptional regulator, RpiR family compare
PP_0082 -2.3 -4.8 tryptophan synthase alpha chain compare
PP_4701 -2.3 -1.3 glucose-6-phosphate isomerase compare
PP_4678 -2.2 -9.0 Ketol-acid reductoisomerase compare
PP_0083 -2.2 -4.5 tryptophan synthase beta chain compare
PP_2499 -2.2 -1.5 conserved protein of unknown function compare
PP_4561 -2.2 -1.2 stress response protein compare
PP_1088 -2.1 -8.3 Argininosuccinate synthase compare
PP_4785 -2.1 -5.8 conserved exported protein of unknown function compare
PP_5347 -2.1 -8.3 pyruvate carboxylase subunit A compare
PP_3035 -2.1 -2.1 conserved protein of unknown function compare
PP_2168 -2.1 -7.4 Transaldolase compare
PP_3241 -2.0 -1.6 conserved exported protein of unknown function compare
PP_1022 -2.0 -3.1 glucose 6-phosphate-1-dehydrogenase compare
PP_0967 -2.0 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3532 -2.0 -2.1 Transcriptional regulator, AsnC family compare
PP_3511 -2.0 -4.9 Branched-chain-amino-acid aminotransferase compare
PP_1979 -2.0 -3.6 putative Hydrolase compare
PP_2327 -2.0 -4.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0653 -2.0 -1.5 conserved protein of unknown function compare
PP_0292 -2.0 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5098 -1.9 -4.4 methionine biosynthesis protein MetW compare
PP_5289 -1.9 -2.7 Acetylglutamate kinase compare
PP_4679 -1.9 -4.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5253 -1.9 -2.1 Arylesterase compare
PP_0725 -1.9 -4.3 conserved hypothetical TPR repeat protein compare
PP_2429 -1.9 -2.3 putative Membrane protein compare
PP_0366 -1.9 -4.6 dethiobiotin synthetase compare
PP_2370 -1.9 -3.0 conserved protein of unknown function compare
PP_5267 -1.8 -2.3 putative cytochrome c5 compare
PP_5097 -1.7 -7.3 homoserine O-acetyltransferase compare
PP_2328 -1.7 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_0874 -1.7 -2.5 conserved protein of unknown function compare
PP_1713 -1.7 -1.8 Transcriptional regulator PcaQ compare
PP_0420 -1.7 -7.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5128 -1.6 -4.7 Dihydroxy-acid dehydratase compare
PP_3903 -1.6 -1.4 conserved protein of unknown function compare
PP_4555 -1.6 -2.3 conserved protein of unknown function compare
PP_2820 -1.6 -2.1 HTH-type transcriptional regulator nfxB compare
PP_2462 -1.6 -2.1 conserved protein of unknown function compare
PP_0362 -1.6 -7.1 Biotin synthase compare
PP_1025 -1.6 -7.4 2-isopropylmalate synthase compare
PP_5346 -1.6 -5.1 pyruvate carboxylase subunit B compare
PP_1055 -1.6 -1.4 Type II secretion pathway protein GspN compare
PP_5007 -1.5 -2.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2371 -1.5 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -1.5 -3.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1237 -1.5 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2087 -1.4 -2.5 CmpX protein compare
PP_3999 -1.4 -4.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4804 -1.4 -2.2 RlpA-like lipoprotein compare
PP_4126 -1.4 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_0421 -1.4 -4.9 Anthranilate phosphoribosyltransferase compare
PP_2390 -1.4 -4.3 Transcriptional regulator, LysR family compare
PP_0417 -1.4 -8.3 Anthranilate synthase component 1 compare
PP_4994 -1.4 -2.4 conserved protein of unknown function compare
PP_2001 -1.4 -4.2 O-succinylhomoserine sulfhydrylase compare
PP_0025 -1.4 -1.2 hypothetical protein compare
PP_4247 -1.4 -1.4 Exonuclease compare
PP_5185 -1.4 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0365 -1.3 -5.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4419 -1.3 -3.1 transposase compare
PP_1733 -1.3 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0846 -1.3 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_3417 -1.3 -2.4 D-gluconate transporter compare
PP_0775 -1.3 -1.5 conserved protein of unknown function compare
PP_2472 -1.3 -3.4 putative transcriptional regulator, MerR family compare
PP_0880 -1.3 -3.7 dipeptide ABC transporter - putative membrane subunit compare
PP_0422 -1.3 -3.3 Indole-3-glycerol phosphate synthase compare
PP_5203 -1.3 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_5217 -1.3 -5.1 Polyphosphate kinase compare
PP_0547 -1.2 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_t11 -1.2 -1.8 tRNA-Lys compare
PP_0035 -1.2 -1.3 putative bactoprenol-linked glycose transferase compare
PP_2416 -1.2 -2.3 putative Iron ABC transporter, ATP-binding protein compare
PP_1215 -1.2 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4054 -1.2 -1.8 conserved protein of unknown function compare
PP_0966 -1.2 -3.8 Histidinol dehydrogenase compare
PP_1536 -1.2 -1.8 conserved protein of unknown function compare
PP_3481 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1128 -1.1 -2.6 OmpA family protein compare
PP_0787 -1.1 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3244 -1.1 -3.3 Magnesium transporter, MgtC family compare
PP_0363 -1.1 -5.1 8-amino-7-oxononanoate synthase compare
PP_5495 -1.1 -1.1 protein of unknown function compare
PP_1231 -1.1 -2.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1676 -1.1 -3.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4943 -1.1 -1.3 putative Glycosyl transferase compare
PP_0150 -1.1 -1.3 conserved exported protein of unknown function compare
PP_4984 -1.1 -4.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1891 -1.1 -3.8 Type 1 pili subunit FimI compare
PP_5639 -1.0 -3.9 conserved exported protein of unknown function compare
PP_4830 -1.0 -3.0 precorrin-6Y C(5,15)-methyltransferase compare
PP_5048 -1.0 -2.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5001 -1.0 -1.7 protease HslVU, ATPase component compare
PP_2171 -1.0 -2.6 Transporter, LysE family compare
PP_1210 -1.0 -2.5 DNA-binding stress protein compare
PP_0434 -1.0 -2.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1099 -1.0 -1.4 Cold shock protein CapB compare
PP_4936 -1.0 -4.1 O-antigen polymerase compare
PP_1198 -1.0 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1186 -1.0 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_4937 -1.0 -2.0 toluene tolerance protein compare
PP_0313 -1.0 -1.2 putative electron transfer flavoprotein beta subunit compare
PP_2414 -1.0 -1.3 conserved exported protein of unknown function compare
PP_2899 -1.0 -0.9 conserved exported protein of unknown function compare
PP_3773 -0.9 -1.4 conserved protein of unknown function compare
PP_5052 -0.9 -1.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_3080 -0.9 -2.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2378 -0.9 -1.4 Fe/S biogenesis protein NfuA compare
PP_0405 -0.9 -4.2 conserved protein of unknown function compare
PP_4163 -0.9 -2.4 conserved exported protein of unknown function compare
PP_4929 -0.9 -2.8 Transcriptional regulator, LysR family compare
PP_2753 -0.9 -3.4 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_0789 -0.9 -2.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3748 -0.9 -2.6 conserved hypothetical protein compare
PP_4940 -0.9 -3.9 Putative glycosyltransferase compare
PP_1054 -0.9 -0.7 Type II secretion pathway protein XcpZ compare
PP_1736 -0.9 -1.6 conserved protein of unknown function compare
PP_4480 -0.9 -4.0 arginine N-succinyltransferase, subunit alpha compare
PP_2655 -0.9 -0.9 conserved protein of unknown function compare
PP_0435 -0.9 -3.4 Peptidase, M23/M37 family compare
PP_0958 -0.9 -2.8 phospholipid ABC transporter ATP-binding subunit compare
PP_3840 -0.8 -1.0 conserved protein of unknown function compare
PP_2107 -0.8 -1.4 conserved protein of unknown function compare
PP_1114 -0.8 -2.9 SEC-C domain protein compare
PP_4826 -0.8 -2.7 Precorrin-3B C17-methyltransferase compare
PP_1963 -0.8 -2.0 conserved protein of unknown function compare
PP_2976 -0.8 -1.1 putative transposase compare
PP_0550 -0.8 -2.7 conserved protein of unknown function compare
PP_1355 -0.8 -3.5 Muropeptide permease AmpG compare
PP_2539 -0.8 -2.0 Transcriptional regulator, LysR family compare
PP_1568 -0.8 -0.9 conserved protein of unknown function compare
PP_5311 -0.8 -3.2 putative signal transduction protein compare
PP_2388 -0.8 -1.5 Transporter, LysE family compare
PP_3590 -0.8 -2.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5075 -0.8 -4.9 glutamate synthase (NADPH) beta subunit compare
PP_3563 -0.8 -2.2 conserved exported protein of unknown function compare
PP_5451 -0.8 -2.8 protein of unknown function compare
PP_1020 -0.8 -1.5 putative glucose-6-phosphate 1-epimerase compare
PP_0364 -0.8 -3.1 pimeloyl-[acp] methyl ester esterase compare
PP_5038 -0.8 -2.0 conserved lipoprotein of unknown function compare
PP_5507 -0.8 -2.2 protein of unknown function compare
PP_3000 -0.8 -2.4 MaoC domain protein compare
PP_1216 -0.8 -0.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0138 -0.8 -3.7 conserved membrane protein of unknown function compare
PP_0627 -0.8 -0.8 conserved protein of unknown function compare
PP_4058 -0.8 -3.9 1,4-alpha-glucan branching enzyme compare
PP_4301 -0.8 -2.3 Pyruvate kinase compare
PP_1834 -0.8 -1.2 conserved protein of unknown function compare
PP_4338 -0.8 -2.9 Chemotaxis histidine kinase CheA compare
PP_2747 -0.8 -1.1 conserved protein of unknown function compare
PP_2032 -0.8 -1.8 putative ATPase compare
PP_4528 -0.8 -1.0 conserved protein of unknown function compare
PP_5500 -0.7 -1.1 protein of unknown function compare
PP_4870 -0.7 -1.7 Azurin compare
PP_2552 -0.7 -4.2 DOPA decarboxylase compare
PP_2081 -0.7 -2.7 putative phosphoenolpyruvate synthase regulatory protein compare
PP_1009 -0.7 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0122 -0.7 -1.7 conserved exported protein of unknown function compare
PP_5597 -0.7 -1.4 conserved protein of unknown function compare
PP_0978 -0.7 -0.7 conserved protein of unknown function compare
PP_3378 -0.7 -1.3 putative 2-ketogluconokinase compare
PP_4332 -0.7 -2.8 Chemotaxis protein CheW compare
PP_0273 -0.7 -1.5 conserved protein of unknown function compare
PP_4681 -0.7 -0.8 conserved protein of unknown function compare
PP_0258 -0.7 -1.5 regulator of murein cross-linking compare
PP_1609 -0.7 -1.0 conserved protein of unknown function compare
PP_5441 -0.7 -1.5 protein of unknown function compare
PP_3037 -0.7 -1.4 C4-type zinc finger protein, DksA/TraR family compare
PP_3813 -0.7 -3.0 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4964 -0.7 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_3539 -0.7 -1.6 putative Transcriptional regulator compare
PP_0754 -0.7 -1.7 conserved protein of unknown function compare
PP_3206 -0.7 -2.9 conserved protein of unknown function compare
PP_3447 -0.7 -0.7 conserved membrane protein of unknown function compare
PP_1326 -0.7 -2.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0569 -0.7 -2.8 MATE efflux family protein compare
PP_1076 -0.7 -2.4 aquaglyceroporin compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms