Experiment set19IT031 for Pseudomonas putida KT2440

Compare to:

Temperature shift 10_to_30; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.1 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1142 -3.8 -1.4 conserved protein of unknown function compare
PP_4561 -3.7 -1.3 stress response protein compare
PP_5453 -3.5 -2.0 conserved protein of unknown function compare
PP_3511 -3.2 -6.4 Branched-chain-amino-acid aminotransferase compare
PP_5155 -3.0 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2168 -3.0 -8.3 Transaldolase compare
PP_0082 -2.9 -6.3 tryptophan synthase alpha chain compare
PP_5098 -2.9 -7.5 methionine biosynthesis protein MetW compare
PP_0083 -2.8 -6.8 tryptophan synthase beta chain compare
PP_4680 -2.8 -11.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1269 -2.8 -1.4 Universal stress protein family compare
PP_1988 -2.7 -6.8 3-isopropylmalate dehydrogenase compare
PP_0290 -2.7 -6.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1898 -2.7 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4678 -2.7 -10.0 Ketol-acid reductoisomerase compare
PP_5097 -2.7 -9.0 homoserine O-acetyltransferase compare
PP_5347 -2.4 -8.6 pyruvate carboxylase subunit A compare
PP_4268 -2.4 -1.7 nucleoid-associated broad specificity regulator compare
PP_1088 -2.3 -8.9 Argininosuccinate synthase compare
PP_0422 -2.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_4679 -2.3 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -2.3 -5.1 Imidazoleglycerol-phosphate dehydratase compare
PP_4593 -2.3 -1.9 conserved protein of unknown function compare
PP_1654 -2.2 -2.1 cysteine synthase B compare
PP_1362 -2.2 -3.0 pyruvate kinase II compare
PP_1986 -2.2 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_1826 -2.2 -3.2 Hydrolase, isochorismatase family compare
PP_1985 -2.2 -3.9 3-isopropylmalate dehydratase large subunit compare
PP_5015 -2.2 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0967 -2.1 -5.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2371 -2.1 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4785 -2.0 -4.2 conserved exported protein of unknown function compare
PP_1025 -2.0 -7.2 2-isopropylmalate synthase compare
PP_0965 -1.9 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0184 -1.9 -3.8 Argininosuccinate lyase compare
PP_2899 -1.9 -1.5 conserved exported protein of unknown function compare
PP_0966 -1.9 -6.0 Histidinol dehydrogenase compare
PP_3398 -1.8 -1.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3539 -1.8 -2.1 putative Transcriptional regulator compare
PP_0291 -1.8 -4.0 conserved protein of unknown function compare
PP_1764 -1.8 -2.4 Phosphoglycolate phosphatase 2 compare
PP_5289 -1.7 -2.4 Acetylglutamate kinase compare
PP_3449 -1.7 -2.4 conserved exported protein of unknown function compare
PP_1079 -1.7 -3.7 Ornithine carbamoyltransferase compare
PP_4890 -1.7 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0420 -1.6 -5.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4994 -1.6 -2.8 conserved protein of unknown function compare
PP_2001 -1.6 -4.5 O-succinylhomoserine sulfhydrylase compare
PP_4696 -1.6 -3.5 Nitrogen regulation protein NR(I) compare
PP_3999 -1.6 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5008 -1.6 -1.1 Poly granule-associated protein compare
PP_4273 -1.6 -1.3 Transcriptional regulator, MerR family compare
PP_4835 -1.6 -2.9 conserved exported protein of unknown function compare
PP_3048 -1.6 -1.0 conserved protein of unknown function compare
PP_4792 -1.6 -1.7 conserved exported protein of unknown function compare
PP_1683 -1.6 -1.5 Transcriptional regulator, MarR family compare
PP_2878 -1.6 -1.1 conserved protein of unknown function compare
PP_2327 -1.6 -3.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5185 -1.5 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2737 -1.5 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5128 -1.5 -4.5 Dihydroxy-acid dehydratase compare
PP_0960 -1.5 -3.4 phospholipid ABC transporter binding protein compare
PP_1041 -1.5 -1.5 twin arginine protein export complex subunit compare
PP_4874 -1.5 -1.0 50S ribosomal protein L9 compare
PP_5303 -1.4 -3.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1293 -1.4 -1.7 molybdopterin synthase small subunit compare
PP_1995 -1.4 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4902 -1.4 -2.1 Oligoribonuclease compare
PP_4098 -1.4 -1.6 UvrABC system protein C compare
PP_5748 -1.4 -1.0 cytochrome c heme lyase subunit compare
PP_0236 -1.4 -1.5 NAD(P)H-dependent FMN reductase subunit compare
PP_2718 -1.4 -2.0 arsenic resistance transcriptional regulator compare
PP_3946 -1.4 -1.2 HTH-type transcriptional repressor NicR compare
PP_1022 -1.4 -3.2 glucose 6-phosphate-1-dehydrogenase compare
PP_4340 -1.4 -3.2 response regulator for chemotactic signal transduction compare
PP_5027 -1.4 -1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0292 -1.3 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5533 -1.3 -1.3 conserved protein of unknown function compare
PP_4531 -1.3 -2.2 conserved exported protein of unknown function compare
PP_0421 -1.3 -4.4 Anthranilate phosphoribosyltransferase compare
PP_5217 -1.3 -5.6 Polyphosphate kinase compare
PP_5274 -1.3 -1.6 conserved protein of unknown function compare
PP_0417 -1.3 -7.7 Anthranilate synthase component 1 compare
PP_5490 -1.3 -3.5 site-specific DNA recombinase compare
PP_0364 -1.3 -3.2 pimeloyl-[acp] methyl ester esterase compare
PP_4909 -1.3 -4.1 phosphoserine phosphatase compare
PP_5346 -1.2 -4.2 pyruvate carboxylase subunit B compare
PP_0363 -1.2 -5.3 8-amino-7-oxononanoate synthase compare
PP_3902 -1.2 -1.3 conserved protein of unknown function compare
PP_3014 -1.2 -1.6 conserved exported protein of unknown function compare
PP_0362 -1.2 -5.0 Biotin synthase compare
PP_4699 -1.2 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4952 -1.2 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5552 -1.2 -1.5 conserved protein of unknown function compare
PP_0738 -1.2 -2.0 conserved protein of unknown function compare
PP_2328 -1.1 -2.9 Phosphoadenosine phosphosulfate reductase compare
PP_5028 -1.1 -1.9 proline iminopeptidase compare
PP_0979 -1.1 -2.2 DNA polymerase III subunit chi compare
PP_5225 -1.1 -1.1 frataxin compare
PP_5348 -1.1 -4.3 Transcriptional regulator, LysR family compare
PP_5075 -1.1 -5.1 glutamate synthase (NADPH) beta subunit compare
PP_0365 -1.1 -3.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3407 -1.1 -1.7 conserved protein of unknown function compare
PP_4787 -1.1 -2.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0566 -1.1 -0.9 translation-related factor compare
PP_1757 -1.1 -2.5 DNA-binding transcriptional dual regulator compare
PP_2390 -1.1 -3.4 Transcriptional regulator, LysR family compare
PP_5229 -1.0 -2.7 conserved protein of unknown function compare
PP_4129 -1.0 -1.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4984 -1.0 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5393 -1.0 -1.2 putative metal-binding chaperone compare
PP_0405 -1.0 -3.8 conserved protein of unknown function compare
PP_5059 -1.0 -3.3 conserved exported protein of unknown function compare
PP_t29 -1.0 -1.3 tRNA-Ala compare
PP_3935 -1.0 -2.5 conserved protein of unknown function compare
PP_0839 -1.0 -1.6 tRNA Cm32/Um32 methyltransferase compare
PP_0547 -1.0 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3672 -1.0 -2.4 conserved protein of unknown function compare
PP_0673 -1.0 -1.7 conserved protein of unknown function compare
PP_1734 -1.0 -1.7 Probable septum site-determining protein MinC compare
PP_4581 -1.0 -1.9 putative amidotransferase compare
PP_2025 -1.0 -1.9 Exonuclease SbcD compare
PP_2274 -1.0 -2.2 conserved protein of unknown function compare
PP_3508 -1.0 -2.4 Protein CobW compare
PP_2145 -1.0 -1.6 beta-N-acetylglucosaminidase compare
PP_5473 -1.0 -1.6 putative transcriptional regulator, LuxR family compare
PP_4681 -0.9 -1.5 conserved protein of unknown function compare
PP_2882 -0.9 -2.3 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1646 -0.9 -1.9 putative Thioredoxin compare
PP_3312 -0.9 -1.1 putative Heat shock protein compare
PP_0307 -0.9 -2.3 conserved exported protein of unknown function compare
PP_4937 -0.9 -2.0 toluene tolerance protein compare
PP_4913 -0.9 -2.5 conserved protein of unknown function compare
PP_1544 -0.9 -1.7 conserved protein of unknown function compare
PP_0825 -0.9 -2.5 phosphonates import ATP-binding protein compare
PP_4687 -0.9 -2.6 Hemin import ATP-binding protein HmuV compare
PP_2137 -0.9 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_0963 -0.9 -1.8 putative BolA family protein compare
PP_4832 -0.9 -2.6 Precorrin-6x reductase compare
PP_0781 -0.9 -1.2 conserved protein of unknown function compare
PP_2388 -0.9 -1.6 Transporter, LysE family compare
PP_4481 -0.9 -3.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4847 -0.9 -1.4 chaperone modulatory of CbpA co-chaperone protein compare
PP_1355 -0.9 -3.6 Muropeptide permease AmpG compare
PP_0406 -0.9 -1.3 Nucleotidyltransferase family protein compare
PP_0377 -0.9 -1.3 coenzyme PQQ synthesis protein D compare
PP_1387 -0.9 -2.8 Probable HTH-type transcriptional regulator TtgR compare
PP_4938 -0.9 -4.7 putative Glycosyl transferase compare
PP_0628 -0.9 -2.0 conserved protein of unknown function compare
PP_0138 -0.9 -4.0 conserved membrane protein of unknown function compare
PP_4332 -0.9 -2.0 Chemotaxis protein CheW compare
PP_0787 -0.9 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0905 -0.9 -1.0 conserved exported protein of unknown function compare
PP_3580 -0.9 -1.3 conserved protein of unknown function compare
PP_1733 -0.9 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_5267 -0.9 -1.2 putative cytochrome c5 compare
PP_0122 -0.9 -1.9 conserved exported protein of unknown function compare
PP_0962 -0.8 -1.1 toluene-tolerance protein compare
PP_3102 -0.8 -1.7 conserved protein of unknown function compare
PP_0261 -0.8 -2.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3766 -0.8 -1.4 Lactoylglutathione lyase compare
PP_0435 -0.8 -3.5 Peptidase, M23/M37 family compare
PP_4480 -0.8 -3.1 arginine N-succinyltransferase, subunit alpha compare
PP_2939 -0.8 -2.6 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3715 -0.8 -1.9 Muconate cycloisomerase 1 compare
PP_4336 -0.8 -2.4 flagellar motor rotation protein compare
PP_5478 -0.8 -2.4 conserved protein of unknown function compare
PP_4122 -0.8 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0366 -0.8 -2.7 dethiobiotin synthetase compare
PP_1055 -0.8 -0.8 Type II secretion pathway protein GspN compare
PP_1609 -0.8 -1.2 conserved protein of unknown function compare
PP_1426 -0.8 -3.7 L-aspartate oxidase compare
PP_3034 -0.8 -2.0 putative Regulator protein compare
PP_1231 -0.8 -1.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4285 -0.8 -1.9 5-hydroxyisourate hydrolase compare
PP_5529 -0.8 -2.0 putative epimerase compare
PP_2513 -0.8 -2.3 4-oxalomesaconate tautomerase compare
PP_0181 -0.8 -1.6 conserved protein of unknown function compare
PP_1714 -0.8 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_2575 -0.8 -1.0 conserved exported protein of unknown function compare
PP_0116 -0.8 -2.5 putative lipoprotein compare
PP_0164 -0.8 -2.4 conserved protein of unknown function compare
PP_4482 -0.8 -2.0 Transcriptional regulator, AraC family compare
PP_1568 -0.8 -0.8 conserved protein of unknown function compare
PP_1444 -0.8 -4.3 quinoprotein glucose dehydrogenase compare
PP_3332 -0.8 -2.1 putative cytochrome c-type protein compare
PP_3227 -0.8 -2.3 Transcriptional regulator, LysR family compare
PP_5698 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4977 -0.8 -3.5 5,10-methylenetetrahydrofolate reductase compare
PP_5491 -0.8 -1.0 conserved protein of unknown function with SEC-C motif domain compare
PP_4359 -0.8 -3.3 Flagellar protein FliL compare
PP_3755 -0.8 -3.5 3-hydroxybutyryl-CoA dehydrogenase compare
PP_4317 -0.8 -1.6 conserved protein of unknown function compare
PP_5471 -0.8 -1.0 putative response regulator receiver protein compare
PP_3245 -0.8 -1.0 conserved protein of unknown function compare
PP_5350 -0.8 -1.9 Transcriptional regulator, RpiR family compare
PP_2426 -0.8 -2.8 coniferyl alcohol dehydrogenase compare
PP_1912 -0.8 -1.5 Phosphate acyltransferase compare
PP_4313 -0.8 -1.8 putative peptidylprolyl isomerase compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms